TCONS_00072368-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072368-protein
Unique NameTCONS_00072368-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072368-protein ID=TCONS_00072368-protein|Name=TCONS_00072368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MYNQSAVSIKSSASLLYNNLDVLSSASGLQYAVVHKSNVWVFDAEEIQTN
QAAYRRVVCKGEGTQTSSTIMQAKWCVLPQRTLLVVGSVKGAQMFDENGS
MMIFWQALQPHPKEGKPQFVRGITAAGDNRICIGTADGSIYVFDIPSKGN
GVKLHDTINAHTCALTDLHALDDCMVSADDMGKIILWKVGGAVTKTLEIE
GFGFPCTSVRLHENFIIAAYGSGHLRKFNCKTGTIIVEVAAHAKWINAMD
LSQDGTLVVTASEDTFLRLFDVETFELKFQKAITDVQLTGVRFMDAIDNS
FGVTGYDSSEITIFKPAK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044938XLOC_044938Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072368TCONS_00072368Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 192..229
e-value: 91.0
score: 4.6
coord: 151..188
e-value: 7.4
score: 11.5
coord: 232..271
e-value: 4.0E-5
score: 33.0
coord: 101..144
e-value: 27.0
score: 8.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 239..274
score: 10.442
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 187..318
e-value: 4.7E-17
score: 61.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 18..139
e-value: 3.1E-5
score: 22.7
NoneNo IPR availableGENE3D1.10.10.670coord: 140..186
e-value: 1.6E-4
score: 21.0
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 113..280
score: 10.759
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 78..315

Blast
[Close]
BLAST of TCONS_00072368-protein vs. Swiss-Prot (Human)
Match: WDR54 (WD repeat-containing protein 54 OS=Homo sapiens GN=WDR54 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.004e-61
Identity = 121/332 (36.45%), Postives = 177/332 (53.31%), Query Frame = 0 
Query:    4 QSAVSIKSSASLLYNNLDVLS-SASGLQY-AVVHKSNVWVFDAEEIQTNQAAYRRVVCKGEGTQTSSTIMQAKWCVLPQRTLLVVGSVKGAQMFDENGSMMIFWQALQPHPKEGKPQ---FVRGITAAGDNRICIGTADGSIYVFDIPSKGNGVKLHDTINAHTCALTDLHAL----DDC---MVSADDMGKIILWKVGGAVTKTLEIEGFGFPCTSVRLHENFIIAAYGSGHLRKFNCKTGTIIVEVAAHAKWINAMDLSQDGTLVVTASEDTFLRLFDVE--------TFELKFQKAITDVQLTGVRFMDAIDNSFGVTGYDSSEITIFK 315
            + ++ ++ SA+ L NNL VL   A  L Y  VVH  +  +  A   +    A R++  K     +   I Q  WCVLP R LLV+ S +G QM++ NG  M++W AL     +  P    F RGI A+G + IC+GT  G + VFDIP+KG  + L + +  H   +TD+        DC   MV+ADD G + +W+ G   T    I GFG PC SV+L +  I A YG+G +  +   TG + V++ AHA+ I A+DL+ +   +++A EDTF+ ++ +           E    + + D QL G RF D+  NSF VTGYD +EI  F 
Sbjct:    5 ERSIPLRGSAAALCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAP-EGVPLAQRQLHAKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESNGYTMVYWHALDS--GDASPVQAVFARGIAASG-HFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNPESGYIEVEHCHGECVADTQLCGARFCDSSGNSFAVTGYDLAEIRRFS 332
The following BLAST results are available for this feature:
BLAST of TCONS_00072368-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR542.004e-6136.45WD repeat-containing protein 54 OS=Homo sapiens GN... [more]
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