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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072360 ID=TCONS_00072360|Name=TCONS_00072360|organism=Clytia hemisphaerica|type=transcript|length=1423bp CGCCGATATCGTTCTTTGTGTTGGGAGATGACGGACTTTTACACGTAGTT GCGATCCAAAGAAATCCTGTTCAAAcaTCCGAAGTTGATACATCAGAAAG TTCCAATTGGCTTTTAGCTAAAGGAGAAGCTGAGATGGCCTCGGACCTTT ATTGTCAAGCTAAAATACATCTCGGAGAAGTCCATTTCGTGTCCACTATC TACTGTTTGTCCTTTAGACGTCATTTAAGCACCAAGCATCCCCTCTACGA TTTCTTTAAGCACCATTGCGAAGGGACTGTCCCTCATATCACCACAGTCT TTGAGACTTTGACCACACCCAATGCTGCGGGTAGTGTCATCTACGGAACC GGGAATCAAGGTTTTCTTGATTTGTCGCAAAAAGCTTTTGCAGAACGAGA TTATGAAAGCAACACTTATGAAGATTTCATTGAGGGTAACGGTTTGGATG ACGAGGATATCAAATATTACCCTTTCCGTGATGACGTCAAAGAAATCATG AAAGAATACGAGACTTTcattgatgacatcatcaagACTTATTACAGAAG AGGAAGAATTCACAGGGACGCTGAATTACAATCATGGGCTAACGAGTTGT CGCCTGAAGGAACGGTTCAACCTGATGCTGGGCGAGGCAAGATGAAAGGT TTTCCAGCAAAGTTCGAAACATGCGATCAGTTGAGGACGTTCTTGAAACG ATTTCTGTGGATTAACTTGTTCCACACTTCAGCAAATTATCCTGATTACA GAGATTTTATGCCAACTTCACCAACTAGACTTTATCAAAATCTAGATGGA ACAGACCTGCCTTTATTGAAAGCTCTTACTGGGAAACTTTACAATGTTCA ATATATGATGTTCAGAGGTTTGCTGGCCAATTTCCGAGTGAACAGGATTT TCTCATACTGGAAAGACATCACAAACCCGACATACCGACGAATTGTGCGC AAAGCTTTTTATCGCTTGAACACCATCGTCCAAAAGAAGCTAGAAACAAG AAATGCTGAACGTAAAGCCAAAAATCAATTGGGTTATCAAATCATGGAAC CAAAATGGCTGACAAATAGCGTCcatatttgaaaatgtttcaacCAAGCT atcatttattttgatttttttgtccatatttATCGCTTATTTAATAATCG TTTAATAATcttataattttctttatttaaccTAAGATACAAATATTAAT TCCGAAATcccattttcgatttcaagttAATGCGTAATTGATATTAGAAA ATTAAGACTAAACCTCTTTTTTTACACTCCAAAGTGTGTTGCAAGCTAAC GTTGCGATAAAGCGGGTGTATTGGCTTGCAATCTCCCACCCAGAGCCATT TGaaccattttttgatttttttgatggcCCTTGGTACTTTAGTGAGTGCT CTATCAAAGAATAATGAAATAAG Run BLAST on NCBI transcript from alignment at scaffold_77:198841..202180+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072360 ID=TCONS_00072360|Name=TCONS_00072360|organism=Clytia hemisphaerica|type=transcript|length=3340bp|location=Sequence derived from alignment at scaffold_77:198841..202180+ (Clytia hemisphaerica) CGCCGATATCGTTCTTTGTGTTGGGAGATGACGGACTTTTACACGTAGTT
GCGATCCAAAGAAATCCTGTTCAAAGTATGTTTAACTTCTATTTTTGATT
AGGTATGGGGTTTGAGTGGAGGAGGAAACTTGATCCAAGTAACTACTGAC
GAAAACGTCTTTTCTCGATTGTAATTCTANagacgaaaattttcccggac
gaagttttccccgataaggtatagtGCTACTCTACTTACGTGAAAGAAGT
GAACACTAGGCTAACCTTCCTCcatgactttttttaaaatttaataacag
aaaaatatttcttcttaCAGATGGCAAAGGCTACCACGTGGACGATTTGA
AACCTTTAGTCAACACCAAattctttgaagactttgaaATGAAATATTCT
GCTACAGAATCTGTGTCTATTGAACAGGTAATTACAATTTaattctttca
gaaaaacttttaaagaattgttatgaaattttattaaacTATTGCTTTCG
CATCAGTACAATGAAGACGAGTATCAATTTAGAACAGCCCCCTAGCGGTa
gctctgatcacgatatcacacAATTGTTTGCCTTCAATCATGatcacgaa
aatcagcaaaaaatggataatcacgcatccctttgaaaaagtccaaatca
cgtagCATGgctcaaatattttttcacgtTTTACGTTTCGCGtaatcacg
ttttgacctctgatcacgcaatcacgcaaaaaagTCCTTATCACGTCATC
ACACAAACTGTTTGGGGGGGCTCTTAGAACCCAGTCATGATTGTGCTGTC
TTAAATCAAATAGAGAAATATTCGTCtgcttttcaactttttttatttat
tatttataggCGATTGAGGACGGCCGATTGTTTGTACTTCACATCCCTGA
AATGGTGGGCATTAAAAACGTACCCGACGTATTCGCACCGCTATTGCAAG
ATCGCAAACTTGCTGACGTCAAGTCGCCGATATCGTTCTTTGTGTTGGGA
GATGACGGACTTTTACACGTAGTTGCGATCCAAAGAAATCCTGTTCAAAG
TATGTTTAACTTCTATTTTTGATTAGGTATGGGGTTTGAGTGGAGGAGGA
AACTTGATCCAAGTAACTACTGACGAAAACGTCTTTTCTCGATTGTAATT
CtataaacaaagaaagatttcttTCTGCACAATCACTGTACAAAGCACTG
AGATAATAAACTGAAAGCTAATCtgtaaaacttttctttttttccagcaT
CCGAAGTTGATACATCAGAAAGTTCCAATTGGCTTTTAGCTAAAGGAGAA
GCTGAGATGGCCTCGGACCTTTATTGTCAAGCTAAAATACATCTCGGAGA
AGTCCATTTCGTGTCCACTATCTACTGTTTGTCCTTTAGACGTCATTTAA
GCACCAAGCATCCCCTCTACGATTTCTTTAAGCACCATTGCGAAGGGACT
GTCCCTCATATCACCACAGTCTTTGAGACTTTGACCACACCCAATGCTGC
GGGTAGTGTCATCTACGGAACCGGGAATCAAGGTTTTCTTGATTTGTCGC
AAAAAGCTTTTGCAGAACGAGATTATGAAAGCAACACTTATGAAGATTTC
ATTGAGGTAAGAACAATGCGTAAAGGCTTTTTACCCTTTATTAAGATTTG
ACCTGGGTAGTCTGTTAAACTAAATGGCTTATGCAAAATAGTAAATTTGT
GCAAATGCGTACATAATATTTCTTGCCGACTTTGACACTATCCCTTAGAA
TCTTGTTTTAAAGAATCCAATATTTTGCGTTTCCAGGGTAACGGTTTGGA
TGACGAGGATATCAAATATTACCCTTTCCGTGATGACGTCAAAGAAATCA
TGAAAGAATACGAGACTTTcattgatgacatcatcaagACTTATTACAGA
AGAGGAAGAATTCACAGGGACGCTGAATTACAATCATGGGCTAACGAGTT
GTCGCCTGAAGGAACGGTTCAACCTGATGCTGGGCGAGGCAAGGTAAGGA
AGCACCCTTAATTTATAAATATAATCATACCCCTATCTCATTTTCCAAAG
TAAAGCTTTTCCAGTAGATATTATTTATTCACCAGTGGataattttagga
atttttacAGTGGGTTATAGCTACAGGTCTACATTGGCTATGATATAGAG
AGTGTATTACTTAACAGCCATAACTTGAGATTgagttttcttcaaaaaac
gAAGAGCTTCAATCTTTGGCTTTCTTATTTCACGTGACTCTCACAATACA
GTACCGTcaccagaggtttgtttttcttctcttaCAGTTCATCTCTTACC
AGGGCTTGCCAGCTCAAATAACAACTCTCTTGTTCTTTCATTTAGATGAA
AGGTTTTCCAGCAAAGTTCGAAACATGCGATCAGTTGAGGACGTTCTTGA
AACGATTTCTGTGGATTAACTTGTTCCACACTTCAGCAAATTATCCTGAT
TACAGAGATTTTATGCCAACTTCACCAACTAGACTTTATCAAAATCTAGA
TGGAACAGACCTGCCTTTATTGAAAGCTCTTACTGGGAAACTTTACAATG
TTGTGAGTATATTATGTGGTTTTTATTTGACGACTTTCAAACTACCaact
gaaaattgaataaattaaTAGGGTGTTTTATATCTACAAATCCTAGGCCT
ATTAGTTGATGTTATTTTATAACTTAGATCATTTACAGGGCTTGATCGCT
TGGCCGCACGGGTCTCTTTAATACCATATCTAtataattaatttcaaaat
tgaattcCTTTTCAGCAATATATGATGTTCAGAGGTTTGCTGGCCAATTT
CCGAGTGAACAGGATTTTCTCATACTGGAAAGACATCACAAACCCGACAT
ACCGACGAATTGTGCGCAAAGCTTTTTATCGCTTGAACACCATCGTCCAA
AAGAAGCTAGAAACAAGAAATGCTGAACGTAAAGCCAAAAATCAATTGGG
TTATCAAATCATGGAACCAAAATGGCTGACAAATAGCGTCcatatttgaa
aatgtttcaacCAAGCTatcatttattttgatttttttgtccatatttAT
CGCTTATTTAATAATCGTTTAATAATcttataattttctttatttaaccT
AAGATACAAATATTAATTCCGAAATcccattttcgatttcaagttAATGC
GTAATTGATATTAGAAAATTAAGACTAAACCTCTTTTTTTACACTCCAAA
GTGTGTTGCAAGCTAACGTTGCGATAAAGCGGGTGTATTGGCTTGCAATC
TCCCACCCAGAGCCATTTGaaccattttttgatttttttgatggcCCTTG
GTACTTTAGTGAGTGCTCTATCAAAGAATAATGAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072360-exon-scaffold_77-1491911889:198841..198915 | TCONS_00072360-exon-scaffold_77-1491911889:198841..198915 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1510915933:198841..198915 | TCONS_00072360-exon-scaffold_77-1510915933:198841..198915 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1575043694:198841..198915 | TCONS_00072360-exon-scaffold_77-1575043694:198841..198915 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1491911889:200088..200446 | TCONS_00072360-exon-scaffold_77-1491911889:200088..200446 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1510915933:200088..200446 | TCONS_00072360-exon-scaffold_77-1510915933:200088..200446 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1575043694:200088..200446 | TCONS_00072360-exon-scaffold_77-1575043694:200088..200446 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1491911889:200627..200833 | TCONS_00072360-exon-scaffold_77-1491911889:200627..200833 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1510915933:200627..200833 | TCONS_00072360-exon-scaffold_77-1510915933:200627..200833 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1575043694:200627..200833 | TCONS_00072360-exon-scaffold_77-1575043694:200627..200833 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1491911889:201186..201392 | TCONS_00072360-exon-scaffold_77-1491911889:201186..201392 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1510915933:201186..201392 | TCONS_00072360-exon-scaffold_77-1510915933:201186..201392 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1575043694:201186..201392 | TCONS_00072360-exon-scaffold_77-1575043694:201186..201392 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1491911889:201606..202180 | TCONS_00072360-exon-scaffold_77-1491911889:201606..202180 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1510915933:201606..202180 | TCONS_00072360-exon-scaffold_77-1510915933:201606..202180 | Clytia hemisphaerica | exon |
TCONS_00072360-exon-scaffold_77-1575043694:201606..202180 | TCONS_00072360-exon-scaffold_77-1575043694:201606..202180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_77 | supercontig | scaffold_77:198841..202180 + |
Blast
BLAST of TCONS_00072360 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 1.053e-19 Identity = 95/368 (25.82%), Postives = 157/368 (42.66%), Query Frame = 3
Query: 48 VAIQRNPVQTSE----VDTSESSNWLLAKGEAEMASDLYCQAKI-HLGEVHFVSTIYCLSFRRHLSTKHPLYDFFKHHCEGTVPHITTVFETLTTPNAAGSVIYGTGNQGFLDLSQKAFAERDYESNTYEDFIEGNGLDD-EDIKYYPFRDDVKEIMKEYETFIDDIIKTYYRRGR-IHRDAELQSWANELSPEGTVQPDAGRGKMKGFPAKFETCDQLRTFLKRFLWI-NLFHTSANYP--DYRDFMPTSPTRLYQNLDGTDLPLLKALTGKLYNVQYMMFRG----------LLANFRVNRIF--SYWKD--ITNPTYRRIVRKAFYRLNTIVQKKLETRNAERKAKNQLGYQIMEPKWLTNSVHI 1079
+AIQ N + E + + +WLLAK +SD + I HL H VS ++ ++ R L HP++ H T+ T E L TG G + + Q+A + Y S + + I+ G++ EDI YY +RDD + + TF +++ YY + + D ELQ + N++ G GR K GFP ++ +QL +L ++ + H + N+ D+ ++P +P + P K + V + RG L+ F+ N +F Y ++ I P + R +R N + + + AER K QL Y + P + NSV I
Sbjct: 324 IAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVR-SSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGM----RGR-KSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTM-----RAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMAR---FRKNL---EAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674
The following BLAST results are available for this feature:
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