TCONS_00072360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072360
Unique NameTCONS_00072360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072360 ID=TCONS_00072360|Name=TCONS_00072360|organism=Clytia hemisphaerica|type=transcript|length=1423bp
CGCCGATATCGTTCTTTGTGTTGGGAGATGACGGACTTTTACACGTAGTT
GCGATCCAAAGAAATCCTGTTCAAAcaTCCGAAGTTGATACATCAGAAAG
TTCCAATTGGCTTTTAGCTAAAGGAGAAGCTGAGATGGCCTCGGACCTTT
ATTGTCAAGCTAAAATACATCTCGGAGAAGTCCATTTCGTGTCCACTATC
TACTGTTTGTCCTTTAGACGTCATTTAAGCACCAAGCATCCCCTCTACGA
TTTCTTTAAGCACCATTGCGAAGGGACTGTCCCTCATATCACCACAGTCT
TTGAGACTTTGACCACACCCAATGCTGCGGGTAGTGTCATCTACGGAACC
GGGAATCAAGGTTTTCTTGATTTGTCGCAAAAAGCTTTTGCAGAACGAGA
TTATGAAAGCAACACTTATGAAGATTTCATTGAGGGTAACGGTTTGGATG
ACGAGGATATCAAATATTACCCTTTCCGTGATGACGTCAAAGAAATCATG
AAAGAATACGAGACTTTcattgatgacatcatcaagACTTATTACAGAAG
AGGAAGAATTCACAGGGACGCTGAATTACAATCATGGGCTAACGAGTTGT
CGCCTGAAGGAACGGTTCAACCTGATGCTGGGCGAGGCAAGATGAAAGGT
TTTCCAGCAAAGTTCGAAACATGCGATCAGTTGAGGACGTTCTTGAAACG
ATTTCTGTGGATTAACTTGTTCCACACTTCAGCAAATTATCCTGATTACA
GAGATTTTATGCCAACTTCACCAACTAGACTTTATCAAAATCTAGATGGA
ACAGACCTGCCTTTATTGAAAGCTCTTACTGGGAAACTTTACAATGTTCA
ATATATGATGTTCAGAGGTTTGCTGGCCAATTTCCGAGTGAACAGGATTT
TCTCATACTGGAAAGACATCACAAACCCGACATACCGACGAATTGTGCGC
AAAGCTTTTTATCGCTTGAACACCATCGTCCAAAAGAAGCTAGAAACAAG
AAATGCTGAACGTAAAGCCAAAAATCAATTGGGTTATCAAATCATGGAAC
CAAAATGGCTGACAAATAGCGTCcatatttgaaaatgtttcaacCAAGCT
atcatttattttgatttttttgtccatatttATCGCTTATTTAATAATCG
TTTAATAATcttataattttctttatttaaccTAAGATACAAATATTAAT
TCCGAAATcccattttcgatttcaagttAATGCGTAATTGATATTAGAAA
ATTAAGACTAAACCTCTTTTTTTACACTCCAAAGTGTGTTGCAAGCTAAC
GTTGCGATAAAGCGGGTGTATTGGCTTGCAATCTCCCACCCAGAGCCATT
TGaaccattttttgatttttttgatggcCCTTGGTACTTTAGTGAGTGCT
CTATCAAAGAATAATGAAATAAG
Run BLAST on NCBI

transcript from alignment at scaffold_77:198841..202180+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072360 ID=TCONS_00072360|Name=TCONS_00072360|organism=Clytia hemisphaerica|type=transcript|length=3340bp|location=Sequence derived from alignment at scaffold_77:198841..202180+ (Clytia hemisphaerica)
CGCCGATATCGTTCTTTGTGTTGGGAGATGACGGACTTTTACACGTAGTT
GCGATCCAAAGAAATCCTGTTCAAAGTATGTTTAACTTCTATTTTTGATT
AGGTATGGGGTTTGAGTGGAGGAGGAAACTTGATCCAAGTAACTACTGAC
GAAAACGTCTTTTCTCGATTGTAATTCTANagacgaaaattttcccggac
gaagttttccccgataaggtatagtGCTACTCTACTTACGTGAAAGAAGT
GAACACTAGGCTAACCTTCCTCcatgactttttttaaaatttaataacag
aaaaatatttcttcttaCAGATGGCAAAGGCTACCACGTGGACGATTTGA
AACCTTTAGTCAACACCAAattctttgaagactttgaaATGAAATATTCT
GCTACAGAATCTGTGTCTATTGAACAGGTAATTACAATTTaattctttca
gaaaaacttttaaagaattgttatgaaattttattaaacTATTGCTTTCG
CATCAGTACAATGAAGACGAGTATCAATTTAGAACAGCCCCCTAGCGGTa
gctctgatcacgatatcacacAATTGTTTGCCTTCAATCATGatcacgaa
aatcagcaaaaaatggataatcacgcatccctttgaaaaagtccaaatca
cgtagCATGgctcaaatattttttcacgtTTTACGTTTCGCGtaatcacg
ttttgacctctgatcacgcaatcacgcaaaaaagTCCTTATCACGTCATC
ACACAAACTGTTTGGGGGGGCTCTTAGAACCCAGTCATGATTGTGCTGTC
TTAAATCAAATAGAGAAATATTCGTCtgcttttcaactttttttatttat
tatttataggCGATTGAGGACGGCCGATTGTTTGTACTTCACATCCCTGA
AATGGTGGGCATTAAAAACGTACCCGACGTATTCGCACCGCTATTGCAAG
ATCGCAAACTTGCTGACGTCAAGTCGCCGATATCGTTCTTTGTGTTGGGA
GATGACGGACTTTTACACGTAGTTGCGATCCAAAGAAATCCTGTTCAAAG
TATGTTTAACTTCTATTTTTGATTAGGTATGGGGTTTGAGTGGAGGAGGA
AACTTGATCCAAGTAACTACTGACGAAAACGTCTTTTCTCGATTGTAATT
CtataaacaaagaaagatttcttTCTGCACAATCACTGTACAAAGCACTG
AGATAATAAACTGAAAGCTAATCtgtaaaacttttctttttttccagcaT
CCGAAGTTGATACATCAGAAAGTTCCAATTGGCTTTTAGCTAAAGGAGAA
GCTGAGATGGCCTCGGACCTTTATTGTCAAGCTAAAATACATCTCGGAGA
AGTCCATTTCGTGTCCACTATCTACTGTTTGTCCTTTAGACGTCATTTAA
GCACCAAGCATCCCCTCTACGATTTCTTTAAGCACCATTGCGAAGGGACT
GTCCCTCATATCACCACAGTCTTTGAGACTTTGACCACACCCAATGCTGC
GGGTAGTGTCATCTACGGAACCGGGAATCAAGGTTTTCTTGATTTGTCGC
AAAAAGCTTTTGCAGAACGAGATTATGAAAGCAACACTTATGAAGATTTC
ATTGAGGTAAGAACAATGCGTAAAGGCTTTTTACCCTTTATTAAGATTTG
ACCTGGGTAGTCTGTTAAACTAAATGGCTTATGCAAAATAGTAAATTTGT
GCAAATGCGTACATAATATTTCTTGCCGACTTTGACACTATCCCTTAGAA
TCTTGTTTTAAAGAATCCAATATTTTGCGTTTCCAGGGTAACGGTTTGGA
TGACGAGGATATCAAATATTACCCTTTCCGTGATGACGTCAAAGAAATCA
TGAAAGAATACGAGACTTTcattgatgacatcatcaagACTTATTACAGA
AGAGGAAGAATTCACAGGGACGCTGAATTACAATCATGGGCTAACGAGTT
GTCGCCTGAAGGAACGGTTCAACCTGATGCTGGGCGAGGCAAGGTAAGGA
AGCACCCTTAATTTATAAATATAATCATACCCCTATCTCATTTTCCAAAG
TAAAGCTTTTCCAGTAGATATTATTTATTCACCAGTGGataattttagga
atttttacAGTGGGTTATAGCTACAGGTCTACATTGGCTATGATATAGAG
AGTGTATTACTTAACAGCCATAACTTGAGATTgagttttcttcaaaaaac
gAAGAGCTTCAATCTTTGGCTTTCTTATTTCACGTGACTCTCACAATACA
GTACCGTcaccagaggtttgtttttcttctcttaCAGTTCATCTCTTACC
AGGGCTTGCCAGCTCAAATAACAACTCTCTTGTTCTTTCATTTAGATGAA
AGGTTTTCCAGCAAAGTTCGAAACATGCGATCAGTTGAGGACGTTCTTGA
AACGATTTCTGTGGATTAACTTGTTCCACACTTCAGCAAATTATCCTGAT
TACAGAGATTTTATGCCAACTTCACCAACTAGACTTTATCAAAATCTAGA
TGGAACAGACCTGCCTTTATTGAAAGCTCTTACTGGGAAACTTTACAATG
TTGTGAGTATATTATGTGGTTTTTATTTGACGACTTTCAAACTACCaact
gaaaattgaataaattaaTAGGGTGTTTTATATCTACAAATCCTAGGCCT
ATTAGTTGATGTTATTTTATAACTTAGATCATTTACAGGGCTTGATCGCT
TGGCCGCACGGGTCTCTTTAATACCATATCTAtataattaatttcaaaat
tgaattcCTTTTCAGCAATATATGATGTTCAGAGGTTTGCTGGCCAATTT
CCGAGTGAACAGGATTTTCTCATACTGGAAAGACATCACAAACCCGACAT
ACCGACGAATTGTGCGCAAAGCTTTTTATCGCTTGAACACCATCGTCCAA
AAGAAGCTAGAAACAAGAAATGCTGAACGTAAAGCCAAAAATCAATTGGG
TTATCAAATCATGGAACCAAAATGGCTGACAAATAGCGTCcatatttgaa
aatgtttcaacCAAGCTatcatttattttgatttttttgtccatatttAT
CGCTTATTTAATAATCGTTTAATAATcttataattttctttatttaaccT
AAGATACAAATATTAATTCCGAAATcccattttcgatttcaagttAATGC
GTAATTGATATTAGAAAATTAAGACTAAACCTCTTTTTTTACACTCCAAA
GTGTGTTGCAAGCTAACGTTGCGATAAAGCGGGTGTATTGGCTTGCAATC
TCCCACCCAGAGCCATTTGaaccattttttgatttttttgatggcCCTTG
GTACTTTAGTGAGTGCTCTATCAAAGAATAATGAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044932XLOC_044932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072360-exon-scaffold_77-1491911889:198841..198915TCONS_00072360-exon-scaffold_77-1491911889:198841..198915Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1510915933:198841..198915TCONS_00072360-exon-scaffold_77-1510915933:198841..198915Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1575043694:198841..198915TCONS_00072360-exon-scaffold_77-1575043694:198841..198915Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1491911889:200088..200446TCONS_00072360-exon-scaffold_77-1491911889:200088..200446Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1510915933:200088..200446TCONS_00072360-exon-scaffold_77-1510915933:200088..200446Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1575043694:200088..200446TCONS_00072360-exon-scaffold_77-1575043694:200088..200446Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1491911889:200627..200833TCONS_00072360-exon-scaffold_77-1491911889:200627..200833Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1510915933:200627..200833TCONS_00072360-exon-scaffold_77-1510915933:200627..200833Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1575043694:200627..200833TCONS_00072360-exon-scaffold_77-1575043694:200627..200833Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1491911889:201186..201392TCONS_00072360-exon-scaffold_77-1491911889:201186..201392Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1510915933:201186..201392TCONS_00072360-exon-scaffold_77-1510915933:201186..201392Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1575043694:201186..201392TCONS_00072360-exon-scaffold_77-1575043694:201186..201392Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1491911889:201606..202180TCONS_00072360-exon-scaffold_77-1491911889:201606..202180Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1510915933:201606..202180TCONS_00072360-exon-scaffold_77-1510915933:201606..202180Clytia hemisphaericaexon
TCONS_00072360-exon-scaffold_77-1575043694:201606..202180TCONS_00072360-exon-scaffold_77-1575043694:201606..202180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:198841..202180 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.57742	0.438429	0	0	0	0
Blast
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BLAST of TCONS_00072360 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.053e-19
Identity = 95/368 (25.82%), Postives = 157/368 (42.66%), Query Frame = 3 
Query:   48 VAIQRNPVQTSE----VDTSESSNWLLAKGEAEMASDLYCQAKI-HLGEVHFVSTIYCLSFRRHLSTKHPLYDFFKHHCEGTVPHITTVFETLTTPNAAGSVIYGTGNQGFLDLSQKAFAERDYESNTYEDFIEGNGLDD-EDIKYYPFRDDVKEIMKEYETFIDDIIKTYYRRGR-IHRDAELQSWANELSPEGTVQPDAGRGKMKGFPAKFETCDQLRTFLKRFLWI-NLFHTSANYP--DYRDFMPTSPTRLYQNLDGTDLPLLKALTGKLYNVQYMMFRG----------LLANFRVNRIF--SYWKD--ITNPTYRRIVRKAFYRLNTIVQKKLETRNAERKAKNQLGYQIMEPKWLTNSVHI 1079
            +AIQ N +   E    + +    +WLLAK     +SD +    I HL   H VS ++ ++  R L   HP++     H   T+   T   E L            TG  G + + Q+A  +  Y S  + + I+  G++  EDI YY +RDD   + +   TF  +++  YY   + +  D ELQ + N++   G      GR K  GFP   ++ +QL  +L   ++  +  H + N+   D+  ++P +P  +         P  K +      V  +  RG           L+ F+ N +F   Y ++  I  P    + R   +R N    + + +  AER  K QL Y  + P  + NSV I
Sbjct:  324 IAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVR-SSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGM----RGR-KSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTM-----RAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMAR---FRKNL---EAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674
The following BLAST results are available for this feature:
BLAST of TCONS_00072360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOX51.053e-1925.82Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
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