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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072359 ID=TCONS_00072359|Name=TCONS_00072359|organism=Clytia hemisphaerica|type=transcript|length=2917bpRun BLAST on NCBI protein sequence of TCONS_00072359-protein >TCONS_00072359-protein ID=TCONS_00072359-protein|Name=TCONS_00072359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=657bp MKVVTLLLACVVVAQCHSTLHQDETKLDEDLAKLTKMVLGRWKNKRSHRSRun BLAST on NCBI transcript from alignment at scaffold_77:196701..202180+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072359 ID=TCONS_00072359|Name=TCONS_00072359|organism=Clytia hemisphaerica|type=transcript|length=5480bp|location=Sequence derived from alignment at scaffold_77:196701..202180+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_77:196701..202180+ >TCONS_00072359 ID=TCONS_00072359|Name=TCONS_00072359|organism=Clytia hemisphaerica|type=CDS|length=19740bp|location=Sequence derived from alignment at scaffold_77:196701..202180+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072359 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.384e-23 Identity = 122/495 (24.65%), Postives = 204/495 (41.21%), Query Frame = 3
Query: 1161 TITDHVSTGHWQTDEAFTQRRLTGQCPYFLKKVVDDEDGKGYHVDDLKPLVNTKFFEDFEMKYSATESVSIEQAIEDGRLFVLHIPEMVGIKNVPDVFAPLLQDRKLADVKSPISFFVLGDDGLLHVVAIQRNPVQTSE----VDTSESSNWLLAKGEAEMASDLYCQAKI-HLGEVHFVSTIYCLSFRRHLSTKHPLYDFFKHHCEGTVPHITTVFETLTTPNAAGSVIYGTGNQGFLDLSQKAFAERDYESNTYEDFIEGNGLDD-EDIKYYPFRDDVKEIMKEYETFIDDIIKTYYRRGR-IHRDAELQSWANELSPEGTVQPDAGRGKMKGFPAKFETCDQLRTFLKRFLWI-NLFHTSANYP--DYRDFMPTSPTRLYQNLDGTDLPLLKALTGKLYNVQYMMFRG----------LLANFRVNRIF--SYWKD--ITNPTYRRIVRKAFYRLNTIVQKKLETRNAERKAKNQLGYQIMEPKWLTNSVHI 2573
TI++ V HWQ D F + L G P +++ + + K V T+ E S +S+EQ ++ G +F++ + GI A L + +PI + +AIQ N + E + + +WLLAK +SD + I HL H VS ++ ++ R L HP++ H T+ T E L TG G + + Q+A + Y S + + I+ G++ EDI YY +RDD + + TF +++ YY + + D ELQ + N++ G GR K GFP ++ +QL +L ++ + H + N+ D+ ++P +P + P K + V + RG L+ F+ N +F Y ++ I P + R +R N + + + AER K QL Y + P + NSV I
Sbjct: 218 TISERV-MNHWQEDLMFGYQFLNGCNPVLIRRCTELPE---------KLPVTTEMVE-----CSLERQLSLEQEVQQGNIFIVDFELLDGID------ANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVR-SSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGM----RGR-KSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTM-----RAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMAR---FRKNL---EAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674 The following BLAST results are available for this feature:
BLAST of TCONS_00072359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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