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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072349 ID=TCONS_00072349|Name=TCONS_00072349|organism=Clytia hemisphaerica|type=transcript|length=1527bpRun BLAST on NCBI protein sequence of TCONS_00072349-protein >TCONS_00072349-protein ID=TCONS_00072349-protein|Name=TCONS_00072349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp MRAGEKALPPADDNAVHEYLSIKAYLSAHDAFNAWFDHYHNKAPVKPKDSRun BLAST on NCBI transcript from alignment at scaffold_77:344..30889+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072349 ID=TCONS_00072349|Name=TCONS_00072349|organism=Clytia hemisphaerica|type=transcript|length=30546bp|location=Sequence derived from alignment at scaffold_77:344..30889+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_77:344..30889+ >TCONS_00072349 ID=TCONS_00072349|Name=TCONS_00072349|organism=Clytia hemisphaerica|type=CDS|length=5589bp|location=Sequence derived from alignment at scaffold_77:344..30889+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072349 vs. Swiss-Prot (Human)
Match: NU107 (Nuclear pore complex protein Nup107 OS=Homo sapiens GN=NUP107 PE=1 SV=1) HSP 1 Score: 301.597 bits (771), Expect = 2.687e-91 Identity = 155/360 (43.06%), Postives = 227/360 (63.06%), Query Frame = 2
Query: 5 EEICVAVLKKFVENLIENQQHDLVAAYTACLPSELQVEIYAKFLQGINDAEIKRNALDTADQFGLELKLITKRIVENIRTEN---FQ--------DSANTEDEKRIIGAIDWLVFNPSQRIEAIKQANAIIRNFLGLKNHDAARSVFSKIPTDSIDIVYKQWRMRAGEKALPPADDNAVHEYLSIKAYLSAHDAFNAWFDHYHNKAPVKPKDSGVGKRTFKEKIAYDEAVKEYTVECERWQKSLEIHINATSEAVYNVFLF-PGGWLVDQRKETNTDGDRQEQISLLRQLCIPYLTLLLHKVLSSNKQHRQCFQLAEIIQSSKYRLYELFQKEELRRFLHLIRESAISLLDAGSEPFGYE 1048
EE+ + VLK +++ LI + +L+A YT LP +L V YA FL+ + + E + + L+ A + L++ ITK +VENIR ++ F D+ TE+++ I IDWLVF+P+QR EA+KQ NAI+R FL K H+AA+ VF KIP DSI +Y Q + E LP DDNA+ E+L I+AYL AH+ FN WF H N P KP + + + TF EK+A++ K+Y ++ W+ L+ E +YNV LF GGW+VD R++ D +R Q+ LLR+LC+P L LLH +L S Q+++C QLA+++ S +++LY +F KEELR+ L +RES++ LLD G +P GYE
Sbjct: 566 EEVSIEVLKTYIQLLIREKHTNLIAFYTCHLPQDLAVAQYALFLESVTEFEQRHHCLELAKEADLDVATITKTVVENIRKKDNGEFSHHDLAPALDTGTTEEDRLKIDVIDWLVFDPAQRAEALKQGNAIMRKFLASKKHEAAKEVFVKIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHM-NSVPQKP--ALIPQPTFTEKVAHEHKEKKYEMDFGIWKGHLDALTADVKEKMYNVLLFVDGGWMVDVREDAKEDHERTHQMVLLRKLCLPMLCFLLHTILHSTGQYQECLQLADMVSSERHKLYLVFSKEELRKLLQKLRESSLMLLDQGLDPLGYE 922 The following BLAST results are available for this feature:
BLAST of TCONS_00072349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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