TCONS_00072349-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072349-protein
Unique NameTCONS_00072349-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length206

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072349-protein ID=TCONS_00072349-protein|Name=TCONS_00072349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MRAGEKALPPADDNAVHEYLSIKAYLSAHDAFNAWFDHYHNKAPVKPKDS
GVGKRTFKEKIAYDEAVKEYTVECERWQKSLEIHINATSEAVYNVFLFPG
GWLVDQRKETNTDGDRQEQISLLRQLCIPYLTLLLHKVLSSNKQHRQCFQ
LAEIIQSSKYRLYELFQKEELRRFLHLIRESAISLLDAGSEPFGYESLHV
YKMDRS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044926XLOC_044926Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072349TCONS_00072349Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007252Nup84_Nup100
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005643 nuclear pore
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007252Nuclear pore protein 84/107PFAMPF04121Nup84_Nup100coord: 8..182
e-value: 1.0E-35
score: 123.0

Blast
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BLAST of TCONS_00072349-protein vs. Swiss-Prot (Human)
Match: NU107 (Nuclear pore complex protein Nup107 OS=Homo sapiens GN=NUP107 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.385e-51
Identity = 86/193 (44.56%), Postives = 125/193 (64.77%), Query Frame = 0 
Query:    5 EKALPPADDNAVHEYLSIKAYLSAHDAFNAWFDHYHNKAPVKPKDSGVGKRTFKEKIAYDEAVKEYTVECERWQKSLEIHINATSEAVYNVFLF-PGGWLVDQRKETNTDGDRQEQISLLRQLCIPYLTLLLHKVLSSNKQHRQCFQLAEIIQSSKYRLYELFQKEELRRFLHLIRESAISLLDAGSEPFGYE 196
            E  LP  DDNA+ E+L I+AYL AH+ FN WF H  N  P KP  + + + TF EK+A++   K+Y ++   W+  L+       E +YNV LF  GGW+VD R++   D +R  Q+ LLR+LC+P L  LLH +L S  Q+++C QLA+++ S +++LY +F KEELR+ L  +RES++ LLD G +P GYE
Sbjct:  733 ESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHM-NSVPQKP--ALIPQPTFTEKVAHEHKEKKYEMDFGIWKGHLDALTADVKEKMYNVLLFVDGGWMVDVREDAKEDHERTHQMVLLRKLCLPMLCFLLHTILHSTGQYQECLQLADMVSSERHKLYLVFSKEELRKLLQKLRESSLMLLDQGLDPLGYE 922
The following BLAST results are available for this feature:
BLAST of TCONS_00072349-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NU1074.385e-5144.56Nuclear pore complex protein Nup107 OS=Homo sapien... [more]
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