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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072330 ID=TCONS_00072330|Name=TCONS_00072330|organism=Clytia hemisphaerica|type=transcript|length=1794bp
TATTCGAGATTCATACAACATCATTCCGAACTTTGATGATTTCACAAACT
TTGTAAAAGACGAAATGAAACTCGTAAATGATCCAATGTTTTCACGTGAA
GCTGCAGGTCCAATATCCTACGATAGAGCTTCAGGATCAGATGCTTCAAG
AAGACGAGGAGGTTTCCGATCAAATGCCACTGGAGTAGATAAAGACCAAC
CAACACCTACCTGTCCAATGTGCAAATCTACACAACATGATCTCGACGAC
TGCAGAGAGTTTCTGCAGCTCGATTCCGAAAACCGTAAGAAGTACGTCTT
CAATCGTCGCCTTTGTTTCTGCTGTTTACAACCGAATCACACTGCCAGAG
AATGCAGATCAAAGAAAACGTGCAAGGTTTGTCGCATGTCCCATCCAACT
TCACTGCATGCTCCACGAAGAAGATTCCCTCCACCTACTGCAACTCCTCA
ATCAAACGTTTCTCCGACTCCTCCACCAAACGTTCCTCCGACTCCTCCAC
CAAGAACTGACGATAAAATTGATAATGTTGAACAGTCGTTTAGTAATAAA
TGTACAGATATTCACGAGAACTCTGTATCCGTATCCGTTGTTCCAGTCTG
GTTGTATCACTCAAGCAACCCGACCAAGAAGGTATCCACTTATGCCCTCC
TCGACAGTTGTAGTCAAGGTTCATTCGTCACTGAGGATATTATGAACGAT
TTAAACTTGAATGGAATCTCTACTACGATTACAATTAAAACTTTGAATAA
TGAAGCATCAGAACCATCATTTGCTGTAAACGGTCTGGTTGCTCAACCAT
ATTTCGAAGTTGATGGATGCAAGAACGTCACCTTACCAAAACTCTTCTCC
AGAAAGAATCTACCAACTGAGCCAGGAGAGATTCCTACCAGATGTTCCTT
GGCGAAATACACTTATCTTAAAGATCTTCTTCAGTACGTACCTGTCAATA
CATCCAATCTTCAGTTCGGCATCCTCATCGGAGTCAATTGTGTTCGAGCA
CTTGAACCATTAGAAGTGGTAAATTCAGAGGGTAATGGACCATACGCATA
TAAGACACGACTTGGTTGGTGCATTACTGGGCCAAAAAGCTGTCGCCAGA
ATGGGACTATCAACTGCAGACGTACCTCAATCACCTCGTCCACAAAGATC
AAAGAGGAATCCTTGAAAGATATGATGATTCAAATGTACCAACAAGACTT
CGTTGAACCAGACCAACACCAAGCTAGCCTTTCAGTAGAAGATAGACGAT
TCCTACATACAATGGATACTGGTACAAAGTTACAGGATTCGCACTACATT
TTACCAGTTCCATTTCGTTCAGAAAATTTATCATTACCAAACAATCGGTC
CCAAGCCTTCAATCGAGCAATGTGGCTAAAGAAAAAGTTAGAAAGACGTG
ATCAGTTCCGTGATGACTATGTAAAGTTCATGCAAGAGCTCCTGTCGAAA
GAGTATGTCGTCAAGTGTGAAAAACCTCCAACCGTAGGTAAAGTCTGGTA
CGTACCGCACCACGGCGTATACCACCCGCAAAAACCAGAAAAGATACGGG
TGGTCTTTGATTGCAGCGCTTCATTCGTTGGCCGATGTCTTAACAAGGAG
ATACTACAAGGTCCAGATTTGATTAATTCGCTTGTTGGTGTTCTTTGTCG
ATTTCGTAGCAACCATGTCGCATTCATGGGTGATATCGAGAAAATGTATT
ATCAAGTACGTCTACCTGAAGAGCATCAAGATTTCTTCCGAATCCTCTGG
TGGCCCAACGGTGATACAAatcagaaattgcaagaatatCGAAT Run BLAST on NCBI protein sequence of TCONS_00072330-protein >TCONS_00072330-protein ID=TCONS_00072330-protein|Name=TCONS_00072330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp
IRDSYNIIPNFDDFTNFVKDEMKLVNDPMFSREAAGPISYDRASGSDASR
RRGGFRSNATGVDKDQPTPTCPMCKSTQHDLDDCREFLQLDSENRKKYVF
NRRLCFCCLQPNHTARECRSKKTCKVCRMSHPTSLHAPRRRFPPPTATPQ
SNVSPTPPPNVPPTPPPRTDDKIDNVEQSFSNKCTDIHENSVSVSVVPVW
LYHSSNPTKKVSTYALLDSCSQGSFVTEDIMNDLNLNGISTTITIKTLNN
EASEPSFAVNGLVAQPYFEVDGCKNVTLPKLFSRKNLPTEPGEIPTRCSL
AKYTYLKDLLQYVPVNTSNLQFGILIGVNCVRALEPLEVVNSEGNGPYAY
KTRLGWCITGPKSCRQNGTINCRRTSITSSTKIKEESLKDMMIQMYQQDF
VEPDQHQASLSVEDRRFLHTMDTGTKLQDSHYILPVPFRSENLSLPNNRS
QAFNRAMWLKKKLERRDQFRDDYVKFMQELLSKEYVVKCEKPPTVGKVWY
VPHHGVYHPQKPEKIRVVFDCSASFVGRCLNKEILQGPDLINSLVGVLCR
FRSNHVAFMGDIEKMYYQVRLPEEHQDFFRILWWPNGDTNQKLQEYR Run BLAST on NCBI transcript from alignment at scaffold_76:29121..30914 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072330 ID=TCONS_00072330|Name=TCONS_00072330|organism=Clytia hemisphaerica|type=transcript|length=1794bp|location=Sequence derived from alignment at scaffold_76:29121..30914 (Clytia hemisphaerica)
ATTCGatattcttgcaatttctgatTTGTATCACCGTTGGGCCACCAGAG
GATTCGGAAGAAATCTTGATGCTCTTCAGGTAGACGTACTTGATAATACA
TTTTCTCGATATCACCCATGAATGCGACATGGTTGCTACGAAATCGACAA
AGAACACCAACAAGCGAATTAATCAAATCTGGACCTTGTAGTATCTCCTT
GTTAAGACATCGGCCAACGAATGAAGCGCTGCAATCAAAGACCACCCGTA
TCTTTTCTGGTTTTTGCGGGTGGTATACGCCGTGGTGCGGTACGTACCAG
ACTTTACCTACGGTTGGAGGTTTTTCACACTTGACGACATACTCTTTCGA
CAGGAGCTCTTGCATGAACTTTACATAGTCATCACGGAACTGATCACGTC
TTTCTAACTTTTTCTTTAGCCACATTGCTCGATTGAAGGCTTGGGACCGA
TTGTTTGGTAATGATAAATTTTCTGAACGAAATGGAACTGGTAAAATGTA
GTGCGAATCCTGTAACTTTGTACCAGTATCCATTGTATGTAGGAATCGTC
TATCTTCTACTGAAAGGCTAGCTTGGTGTTGGTCTGGTTCAACGAAGTCT
TGTTGGTACATTTGAATCATCATATCTTTCAAGGATTCCTCTTTGATCTT
TGTGGACGAGGTGATTGAGGTACGTCTGCAGTTGATAGTCCCATTCTGGC
GACAGCTTTTTGGCCCAGTAATGCACCAACCAAGTCGTGTCTTATATGCG
TATGGTCCATTACCCTCTGAATTTACCACTTCTAATGGTTCAAGTGCTCG
AACACAATTGACTCCGATGAGGATGCCGAACTGAAGATTGGATGTATTGA
CAGGTACGTACTGAAGAAGATCTTTAAGATAAGTGTATTTCGCCAAGGAA
CATCTGGTAGGAATCTCTCCTGGCTCAGTTGGTAGATTCTTTCTGGAGAA
GAGTTTTGGTAAGGTGACGTTCTTGCATCCATCAACTTCGAAATATGGTT
GAGCAACCAGACCGTTTACAGCAAATGATGGTTCTGATGCTTCATTATTC
AAAGTTTTAATTGTAATCGTAGTAGAGATTCCATTCAAGTTTAAATCGTT
CATAATATCCTCAGTGACGAATGAACCTTGACTACAACTGTCGAGGAGGG
CATAAGTGGATACCTTCTTGGTCGGGTTGCTTGAGTGATACAACCAGACT
GGAACAACGGATACGGATACAGAGTTCTCGTGAATATCTGTACATTTATT
ACTAAACGACTGTTCAACATTATCAATTTTATCGTCAGTTCTTGGTGGAG
GAGTCGGAGGAACGTTTGGTGGAGGAGTCGGAGAAACGTTTGATTGAGGA
GTTGCAGTAGGTGGAGGGAATCTTCTTCGTGGAGCATGCAGTGAAGTTGG
ATGGGACATGCGACAAACCTTGCACGTTTTCTTTGATCTGCATTCTCTGG
CAGTGTGATTCGGTTGTAAACAGCAGAAACAAAGGCGACGATTGAAGACG
TACTTCTTACGGTTTTCGGAATCGAGCTGCAGAAACTCTCTGCAGTCGTC
GAGATCATGTTGTGTAGATTTGCACATTGGACAGGTAGGTGTTGGTTGGT
CTTTATCTACTCCAGTGGCATTTGATCGGAAACCTCCTCGTCTTCTTGAA
GCATCTGATCCTGAAGCTCTATCGTAGGATATTGGACCTGCAGCTTCACG
TGAAAACATTGGATCATTTACGAGTTTCATTTCGTCTTTTACAAAGTTTG
TGAAATCATCAAAGTTCGGAATGATGTTGTATGAATCTCGAATA Coding sequence (CDS) from alignment at scaffold_76:29121..30914 >TCONS_00072330 ID=TCONS_00072330|Name=TCONS_00072330|organism=Clytia hemisphaerica|type=CDS|length=1791bp|location=Sequence derived from alignment at scaffold_76:29121..30914 (Clytia hemisphaerica)
TCGatattcttgcaatttctgatTTGTATCACCGTTGGGCCACCAGAGGA
TTCGGAAGAAATCTTGATGCTCTTCAGGTAGACGTACTTGATAATACATT
TTCTCGATATCACCCATGAATGCGACATGGTTGCTACGAAATCGACAAAG
AACACCAACAAGCGAATTAATCAAATCTGGACCTTGTAGTATCTCCTTGT
TAAGACATCGGCCAACGAATGAAGCGCTGCAATCAAAGACCACCCGTATC
TTTTCTGGTTTTTGCGGGTGGTATACGCCGTGGTGCGGTACGTACCAGAC
TTTACCTACGGTTGGAGGTTTTTCACACTTGACGACATACTCTTTCGACA
GGAGCTCTTGCATGAACTTTACATAGTCATCACGGAACTGATCACGTCTT
TCTAACTTTTTCTTTAGCCACATTGCTCGATTGAAGGCTTGGGACCGATT
GTTTGGTAATGATAAATTTTCTGAACGAAATGGAACTGGTAAAATGTAGT
GCGAATCCTGTAACTTTGTACCAGTATCCATTGTATGTAGGAATCGTCTA
TCTTCTACTGAAAGGCTAGCTTGGTGTTGGTCTGGTTCAACGAAGTCTTG
TTGGTACATTTGAATCATCATATCTTTCAAGGATTCCTCTTTGATCTTTG
TGGACGAGGTGATTGAGGTACGTCTGCAGTTGATAGTCCCATTCTGGCGA
CAGCTTTTTGGCCCAGTAATGCACCAACCAAGTCGTGTCTTATATGCGTA
TGGTCCATTACCCTCTGAATTTACCACTTCTAATGGTTCAAGTGCTCGAA
CACAATTGACTCCGATGAGGATGCCGAACTGAAGATTGGATGTATTGACA
GGTACGTACTGAAGAAGATCTTTAAGATAAGTGTATTTCGCCAAGGAACA
TCTGGTAGGAATCTCTCCTGGCTCAGTTGGTAGATTCTTTCTGGAGAAGA
GTTTTGGTAAGGTGACGTTCTTGCATCCATCAACTTCGAAATATGGTTGA
GCAACCAGACCGTTTACAGCAAATGATGGTTCTGATGCTTCATTATTCAA
AGTTTTAATTGTAATCGTAGTAGAGATTCCATTCAAGTTTAAATCGTTCA
TAATATCCTCAGTGACGAATGAACCTTGACTACAACTGTCGAGGAGGGCA
TAAGTGGATACCTTCTTGGTCGGGTTGCTTGAGTGATACAACCAGACTGG
AACAACGGATACGGATACAGAGTTCTCGTGAATATCTGTACATTTATTAC
TAAACGACTGTTCAACATTATCAATTTTATCGTCAGTTCTTGGTGGAGGA
GTCGGAGGAACGTTTGGTGGAGGAGTCGGAGAAACGTTTGATTGAGGAGT
TGCAGTAGGTGGAGGGAATCTTCTTCGTGGAGCATGCAGTGAAGTTGGAT
GGGACATGCGACAAACCTTGCACGTTTTCTTTGATCTGCATTCTCTGGCA
GTGTGATTCGGTTGTAAACAGCAGAAACAAAGGCGACGATTGAAGACGTA
CTTCTTACGGTTTTCGGAATCGAGCTGCAGAAACTCTCTGCAGTCGTCGA
GATCATGTTGTGTAGATTTGCACATTGGACAGGTAGGTGTTGGTTGGTCT
TTATCTACTCCAGTGGCATTTGATCGGAAACCTCCTCGTCTTCTTGAAGC
ATCTGATCCTGAAGCTCTATCGTAGGATATTGGACCTGCAGCTTCACGTG
AAAACATTGGATCATTTACGAGTTTCATTTCGTCTTTTACAAAGTTTGTG
AAATCATCAAAGTTCGGAATGATGTTGTATGAATCTCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072330-exon-scaffold_76-1491911889:29121..30914 | TCONS_00072330-exon-scaffold_76-1491911889:29121..30914 | Clytia hemisphaerica | exon |
| TCONS_00072330-exon-scaffold_76-1510915933:29121..30914 | TCONS_00072330-exon-scaffold_76-1510915933:29121..30914 | Clytia hemisphaerica | exon |
| TCONS_00072330-exon-scaffold_76-1575043694:29121..30914 | TCONS_00072330-exon-scaffold_76-1575043694:29121..30914 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:29121..30914 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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