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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072315 ID=TCONS_00072315|Name=TCONS_00072315|organism=Clytia hemisphaerica|type=transcript|length=1998bp
aAGTTATGATaataaactttctttttaaaagttagcaAGTATATAAATAT
TTGACTTCTAGCTGTTTGTTGTGATTTTTTCGTGCTCGAGAATAACGTTA
TAATTTTGTATTTCAACACAAGATGGCTGATATTATGAGAAAGATATTTT
CACTTAAACCAGAATTGATCGATGTATCAAAGTGTACTCGACACACATTA
TTATATGAACAGATACAAAGAAACAGTGACGAGACATTGCTTCGTCAAAA
GACACAATTTAATCTTGGAAATGGATTACTTTTCAGCGATCCAATCAAAG
CAGCCGACTATCTATTGGAGNTGCTCGAGAATAACGTTATAATTTTGTAT
TTCAACACAAGATGGCTGATattatgagaaaaatattttcacttaaacCA
GAATTGATCGATGTATCAAAGTGCACTCAACACACATCATTATATGAACA
GATACAAAGAAATAGTAACGAGACATTGCTTCGTCAAAAGACACAATTTA
ATCTTGGAAATGGATTACTTTTCAGCGATCCAATCAAAGCAGCCGACTAT
CTATTGGAGAGAGAGTATGCTGAATCTTTCTTATTTGACCAAACTCGTCA
CCAGCCTTTTTTCATACCACCCGTTTTCAAATCGACCCAATATAACAAAG
GCCAATCCATTCTTGATTATGACGTccatttgaaaatcagagaaacaCTT
gacaatttgatgaaaaatgaccCGAATGATTGGTTTACTGTAGAGTTAGG
CAAGTTTCTTCAAACTCAATTGGATAACGAGACCAATGTCATCAATAGCC
GTGATTATAACCAGTGGATTCTGAACGCTAAGGATGAGCTGTCATCGATG
ATCACACCTTAGACGATTTGGTTATATTACAATCAGCGCAATTCATGACC
AATGTTAAGAACAAGAAACATCGAGAGTTCGACATTCTGATGTTCTCTTA
TTCCAGAAAACTCGTCATCGGTATTGAGCTAAAGCGGACATCATCAGATG
AAGCCTTAGATAAAGCCTGTAcccaacttgaaaaatatcgaAAGTCACTC
GAAGAACTATTAGGTGATCAGTTTGATAATGGATGGCAATTCTACCCAGT
GATTTGCGTGGAATAAGATACTCTGCCGTTCCAGACGCAACATTATATTA
ACATGACTGTAGACTTGAATCTCTGGTTGTCAAACATTTTGAAGAGATTC
CCTCTACTCAGTAAAAGCAGTTTACCAGATTCGTTAGAACaccttaaaaa
tgttttaaggaTTATTGTCTTTAGCGTGCATGTTTCAGTGCCAATAACAA
GCACGAACTGGGTGGAGTATATTACAAAAGCTATAGAAACAGTCTCTACA
ACAGACAATGTATTGTTctattcaaccaatcagctaccAGCTTTCAAATC
GACTGATCCGAAGTTTGACAAACTCATACTCTGGGGAGGATACGGAACAG
GAAAAAGCCTCTTGCTACGGGAAAAGGCATTACAGTTGAGCCGTCAGGAC
CCATCGTTTCATGGTCGCATCATGTATGTCCACTGCAATTTATTTGACAA
CAATCGAAGTCTTCAAGTATCATACTTAAAGAATATGTTGGAGCCGCATG
GAATCATTGTAAAATCTTTTGTTCCGtttttgttttggAATCAGAAAGAT
GCAATTGCAGTGTTATTTTAAAAGATgacattctattgcaaaatGGTTTT
ACTTACTAACGTTCAAGACAACATGCATTTCTAACCATTACTGAAGAAAA
ATCGCCACAAGACAGATTGAAGAATGGCACTTCTTTCTGACGAAGACAAG
GTGATTATCAGACATTATATCGAGAAAGAGTATACAGCTTATGAGATATG
GAAGCTGAACCCAGCAAAGAACTGGCATTATTCAAAAGTTAAACGTGCCG
GAAAATCTATGAAGCAATTTGTTGGTCGTGTTCGCACTGTTGGTGAATGT
AATGGTTCCTCAATTAAGATGCATTATTCGTGAACTCAAATCTCGGAT Run BLAST on NCBI transcript from alignment at scaffold_76:141737..144512+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072315 ID=TCONS_00072315|Name=TCONS_00072315|organism=Clytia hemisphaerica|type=transcript|length=2776bp|location=Sequence derived from alignment at scaffold_76:141737..144512+ (Clytia hemisphaerica)
aAGTTATGATaataaactttctttttaaaagttaggcgagaccaatttaa
tttgtttttctacgggtagatcgttagcaaaatatgggtcggtctgtcgg
taaaataagaataaatttttcatttatcagggttggcaaagtaccgaaaa
tgttttccaaaaattatctttcactttttttatcctcgatgaagatcata
ataaaatcttagtgtatggaatgcttgattttctaaatttttcaaatttg
attcttacaaataagtAGTGTGtataatatattgtagtggaaattcaatt
ttattatttttttgattttagcgaaaatagggtcgttcgggcccgtagaa
caacaaattaaattggtctcgccttagcaAGTATATAAATATTTGACTTC
TAGCTGTTTGTTGTGATTTTTTCGTGCTCGAGAATAACGTTATAATTTTG
TATTTCAACACAAGATGGCTGATATTATGAGAAAGATATTTTCACTTAAA
CCAGAATTGATCGATGTATCAAAGTGTACTCGACACACATTATTATATGA
ACAGATACAAAGAAACAGTGACGAGACATTGCTTCGTCAAAAGACACAAT
TTAATCTTGGAAATGGATTACTTTTCAGCGATCCAATCAAAGCAGCCGAC
TATCTATTGGAGNTGCTCGAGAATAACGTTATAATTTTGTATTTCAACAC
AAGATGGCTGATattatgagaaaaatattttcacttaaacCAGAATTGAT
CGATGTATCAAAGTGCACTCAACACACATCATTATATGAACAGATACAAA
GAAATAGTAACGAGACATTGCTTCGTCAAAAGACACAATTTAATCTTGGA
AATGGATTACTTTTCAGCGATCCAATCAAAGCAGCCGACTATCTATTGGA
GAGAGAGTATGCTGAATCTTTCTTATTTGACCAAACTCGTCACCAGCCTT
TTTTCATACCACCCGTTTTCAAATCGACCCAATATAACAAAGGCCAATCC
ATTCTTGATTATGACGTccatttgaaaatcagagaaacaCTTgacaattt
gatgaaaaatgaccCGAATGATTGGTTTACTGTAGAGTTAGGCAAGTTTC
TTCAAACTCAATTGGATAACGAGACCAATGTCATCAATAGCCGTGATTAT
AACCAGTGGATTCTGAACGCTAAGGATGAGCTGTCATCGATGATCACACC
TTAGACGATTTGGTTATATTACAATCAGCGCAATTCATGACCAATGTTAA
GAACAAGAAACATCGAGAGTTCGACATTCTGATGTTCTCTTATTCCAGAA
AACTCGTCATCGGTATTGAGCTAAAGCGGACATCATCAGATGAAGCCTTA
GATAAAGCCTGTAcccaacttgaaaaatatcgaAAGTCACTCGAAGAACT
ATTAGGTGATCAGTTTGATAATGGATGGCAATTCTACCCAGTGATTTGCG
TGGAATAAGATACTCTGCCGTTCCAGACGCAACATTATATTAACATGACT
GTAGACTTGAATCTCTGGTTGTCAAACATTTTGAAGAGATTCCCTCTACT
CAGTAAAAGCAGTTTACCAGATTCGTTAGAACaccttaaaaatgttttaa
ggaTTATTGTCTTTAGCGTGCATGTTTCAGTGCCAATAACAAGCACGAAC
TGGGTGGAGTATATTACAAAAGCTATAGAAACAGTCTCTACAACAGACAA
TGTATTGTTctattcaaccaatcagctaccAGCTTTCAAATCGACTGATC
CGAAGTTTGACAAACTCATACTCTGGGGAGGATACGGAACAGGAAAAAGC
CTCTTGCTACGGGAAAAGGCATTACAGTTGAGCCGTCAGGACCCATCGTT
TCATGGTCGCATCATGTATGTCCACTGCAATTTATTTGACAACAATCGAA
GTCTTCAAGTATCATACTTAAAGAATATGTTGGAGCCGCATGGAATCATT
GTAAAATCTTTTGTTCCGGTAAGATTAAGAATAATTAAAAGTTATCGCAC
GGTACCGAGTgcaatatgggatatatttttcgagttcagatttttcgtgt
tattttccgagcctttaggcaaGAGAgtttagagaaaaatatttatccaa
tATTGTTCGAGCAGAAGTgttataccgggtgtgccaaaaaaaataggcct
aaaattgaaactttgacgtaacttttttcagttagaatagaaacttgaaa
ttttacatgcGTCTTTAGCAACCTATTTCGAAGCTTTACGCAAAGTTTCA
TTTGTACAGCTTTAGTAGTTTCAAAGATATGGAGATTTTCCTAAAGGATG
TGAAAATGTGTTTGTTtatagatttgacgtcaaaacaaaaaaattgtcaa
cCACAGTTCCCTAACGTTTAGTATCCGAACCGGAGTTGCGTTTGtttatt
tcagtttttgttttggAATCAGAAAGATGCAATTGCAGTGTTATTTTAAA
AGATgacattctattgcaaaatGGTTTTACTTACTAACGTTCAAGACAAC
ATGCATTTCTAACCATTACTGAAGAAAAATCGCCACAAGACAGATTGAAG
AATGGCACTTCTTTCTGACGAAGACAAGGTGATTATCAGACATTATATCG
AGAAAGAGTATACAGCTTATGAGATATGGAAGCTGAACCCAGCAAAGAAC
TGGCATTATTCAAAAGTTAAACGTGCCGGAAAATCTATGAAGCAATTTGT
TGGTCGTGTTCGCACTGTTGGTGAATGTAATGGTTCCTCAATTAAGATGC
ATTATTCGTGAACTCAAATCTCGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072315-exon-scaffold_76-1491911889:141737..141771 | TCONS_00072315-exon-scaffold_76-1491911889:141737..141771 | Clytia hemisphaerica | exon |
| TCONS_00072315-exon-scaffold_76-1510915933:141737..141771 | TCONS_00072315-exon-scaffold_76-1510915933:141737..141771 | Clytia hemisphaerica | exon |
| TCONS_00072315-exon-scaffold_76-1575043694:141737..141771 | TCONS_00072315-exon-scaffold_76-1575043694:141737..141771 | Clytia hemisphaerica | exon |
| TCONS_00072315-exon-scaffold_76-1491911889:142114..143704 | TCONS_00072315-exon-scaffold_76-1491911889:142114..143704 | Clytia hemisphaerica | exon |
| TCONS_00072315-exon-scaffold_76-1510915933:142114..143704 | TCONS_00072315-exon-scaffold_76-1510915933:142114..143704 | Clytia hemisphaerica | exon |
| TCONS_00072315-exon-scaffold_76-1575043694:142114..143704 | TCONS_00072315-exon-scaffold_76-1575043694:142114..143704 | Clytia hemisphaerica | exon |
| TCONS_00072315-exon-scaffold_76-1491911889:144141..144512 | TCONS_00072315-exon-scaffold_76-1491911889:144141..144512 | Clytia hemisphaerica | exon |
| TCONS_00072315-exon-scaffold_76-1510915933:144141..144512 | TCONS_00072315-exon-scaffold_76-1510915933:144141..144512 | Clytia hemisphaerica | exon |
| TCONS_00072315-exon-scaffold_76-1575043694:144141..144512 | TCONS_00072315-exon-scaffold_76-1575043694:144141..144512 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:141737..144512 + |
Blast
The following BLAST results are available for this feature:
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