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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072278 ID=TCONS_00072278|Name=TCONS_00072278|organism=Clytia hemisphaerica|type=transcript|length=5741bpRun BLAST on NCBI protein sequence of TCONS_00072278-protein >TCONS_00072278-protein ID=TCONS_00072278-protein|Name=TCONS_00072278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=736bp MTSRSSFIDIKKVTQWYNDVKSFYERERELVNMNWIEIAIPSKDPKNENIRun BLAST on NCBI transcript from alignment at scaffold_73:11611..24937- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072278 ID=TCONS_00072278|Name=TCONS_00072278|organism=Clytia hemisphaerica|type=transcript|length=13327bp|location=Sequence derived from alignment at scaffold_73:11611..24937- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_73:11611..24937- >TCONS_00072278 ID=TCONS_00072278|Name=TCONS_00072278|organism=Clytia hemisphaerica|type=CDS|length=28743bp|location=Sequence derived from alignment at scaffold_73:11611..24937- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072278 vs. Swiss-Prot (Human)
Match: ARHGA (Rho guanine nucleotide exchange factor 10 OS=Homo sapiens GN=ARHGEF10 PE=1 SV=4) HSP 1 Score: 243.047 bits (619), Expect = 3.365e-76 Identity = 146/400 (36.50%), Postives = 238/400 (59.50%), Query Frame = 1
Query: 979 NLDLEKDMYVEVNIDDEMMFPAVLPPLEDDADEFQLKRYQIVKCILENEKVYVTSLNRLINEYEMPLRKR--NIISDDRIKVIFRHVHEIIQCHQLFSMALTDRTKEWSTNDVIGDVIYASFSKSMALKAYTSFVHNFSYAMESIKETCKLVPAFLSFLKTRSSNISTYYQVFKESAKNHLNRNSTKQSLYDLMRQPLERIPQLVTLTQELTKITPLLHPDHFPLQMALTHLECFSETLAEKKRDSMYKHKVRQL-----DNYCIGLEKPLSSKNRYYVRHDDMILCIV-DEGKIVKTKLRRLFILNDLLICAGIXXXXXX-XXXXXXXXFQIKWCVPINDVQILDVGSGISFQSHKQTLTT----KYSHMSSPRP-----GVGDAPKVLEDLQHDIEVI 2124
+L+ E++++++V+ A+L P+ + + Q+ R I+ ++++EK YV +L R++ +YE PL + ++S+ ++K +F V EI+QCH LF +AL R EW + ++IGDV ASFSKSM L AY+ +V+NFS A+ +K+TC PAFL FLK +E++ + + +LY LM +P++R PQ + L Q++ K T HPD PLQMALT LE +E L E+KRD+ + +V+Q+ + Y L K LSS +RY +R DDMI + D G+IVKTK RR+F+LND+L+CA + ++P + ++S+++ +KW VP+ V ++ GS H + L + +++ +P G G + L++L HD+ VI
Sbjct: 388 SLEEEQNLFIDVDCKHPE---AILTPMPEGLSQQQVVRRYILGSVVDSEKNYVDALKRILEQYEKPLSEMEPKVLSERKLKTVFYRVKEILQCHSLFQIALASRVSEWDSVEMIGDVFVASFSKSMVLDAYSEYVNNFSTAVAVLKKTCATKPAFLEFLKQE-----------QEASPD-------RTTLYSLMMKPIQRFPQFILLLQDMLKNTSKGHPDRLPLQMALTELETLAEKLNERKRDADQRCEVKQIAKAINERY---LNKLLSSGSRYLIRSDDMIETVYNDRGEIVKTKERRVFMLNDVLMCATVSSRPSHDSRVMSSQRYLLKWSVPLGHVDAIEYGSSAGTGEHSRHLAVHPPESLAVVANAKPNKVYMGPGQLYQDLQNLLHDLNVI 763 HSP 2 Score: 63.929 bits (154), Expect = 3.365e-76 Identity = 68/289 (23.53%), Postives = 114/289 (39.45%), Query Frame = 2
Query: 2135 IKKVTQWYNDVKSFYERERELVNMNW----------------------IEIAIPSKDPKNENIRY---LFNVHSADKRMEWLAEFENVKLRLTHNNNPGWYLQEDNIYDGEAAVLRRTLPLLSNLMPMFIIENKH-KVTCSL-----------EVSMTTTMKPILWLFSGSDHLGMITLMEMDMTSVPKVMESFVACETRICCAERV-----------PEDGFYSLVPYIQNVSVWVGTMAGRILLFDP---NIEERYPSLHTTLKDAVISLKYCRNRMFAGLANGTLA 2848
I ++TQ ++K Y+ + V +W I++ +P K K+ + +FN + + W+ + KL L N+ GW+ ED DG + + PLL MP+ + + + K+ C+ + +T LW+ S + +G I ++ S PKV+E F E+RI C V P D V ++ VGT G I ++ + + R T K V+SL ++AGL NG +A
Sbjct: 763 IGQITQLIGNLKGNYQNLNQSVAHDWTSGLQRLILKKEDEIRAADCCRIQLQLPGKQDKSGRPTFFTAVFNTFTPAIKESWVNSLQMAKLALEEENHMGWFCVED---DGN-HIKKEKHPLLVGHMPVMVAKQQEFKIECAAYNPEPYLNNESQPDSFSTAHGFLWIGSCTHQMGQIAIVSF-QNSTPKVIECF-NVESRILCMLYVPVEEKRREPGAPPDPETPAVRASDVPTICVGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTSQSLYAGLVNGAVA 1045 HSP 3 Score: 150.984 bits (380), Expect = 3.093e-36 Identity = 96/312 (30.77%), Postives = 153/312 (49.04%), Query Frame = 2
Query: 2867 TTMKPILWLFSGSDHLGMITLMEMDMASVPKVMESFVACETRICCAERVP-----------EDGFYSLVPYIQNVSVWVGTMAGRILLFDPN---IEERYPSLHTTLKDAVISLKYCRNRMFAGLANGTLACFRRKVEGNWDLSNPTIVCLDTNGVLSMTEVVGHLWCGCASNVYVVNTVTLAIERKLTV---EGGGVKHLVAYGIGVWVSSWRSSKLQLYHAETLDQLQTLNVSTAVSRMKNDIDINVEKIVP--EKLYVTSIMARSGLLWVGTDQGLILTYPLPKLGGIPKVNGSACISFHGHDGPVRHL 3745
+T LW+ S + +G I ++ S PKV+E F E+RI C VP D V ++ VGT G I ++ + + R T K V+SL ++AGL NG +A + R +G+WD ++ L V S+ + LW V++++ T A+E +L EG + H+ G+G+W++ S L+L+H ETL LQ +N++T V M +P ++L VTS++ GLL VGT G+++ P+P+L GIPKV G +S+H H+ PV+ +
Sbjct: 917 STAHGFLWIGSCTHQMGQIAIVSF-QNSTPKVIECF-NVESRILCMLYVPVEEKRREPGAPPDPETPAVRASDVPTICVGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTSQSLYAGLVNGAVASYARAPDGSWDSEPQKVIKLGVLPVRSLLMMEDTLWAASGGQVFIISVETHAVEGQLEAHQEEGMVISHMAVSGVGIWIAFTSGSTLRLFHTETLKHLQDINIATPVHNM-----------LPGHQRLSVTSLLVCHGLLMVGTSLGVLVALPVPRLQGIPKVTGRGMVSYHAHNSPVKFI 1215 The following BLAST results are available for this feature:
BLAST of TCONS_00072278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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