TCONS_00072278-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072278-protein
Unique NameTCONS_00072278-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072278-protein ID=TCONS_00072278-protein|Name=TCONS_00072278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=736bp
MTSRSSFIDIKKVTQWYNDVKSFYERERELVNMNWIEIAIPSKDPKNENI
RYLFNVHSADKRMEWLAEFENVKLRLTHNNNPGWYLQEDNIYDGEAAVLR
RTLPLLSNLMPMFIIENKHKVTCSLEVSMTTTMKPILWLFSGSDHLGMIT
LMEMDMTSVPKVMESFVACETRICCAERVPEDGFYSLVPYIQNVSVWVGT
MAGRILLFDPNIEERYPSLHTTLKDAVISLKYCRNRMFAGLANGTLACXV
SMTTTMKPILWLFSGSDHLGMITLMEMDMASVPKVMESFVACETRICCAE
RVPEDGFYSLVPYIQNVSVWVGTMAGRILLFDPNIEERYPSLHTTLKDAV
ISLKYCRNRMFAGLANGTLACFRRKVEGNWDLSNPTIVCLDTNGVLSMTE
VVGHLWCGCASNVYVVNTVTLAIERKLTVEGGGVKHLVAYGIGVWVSSWR
SSKLQLYHAETLDQLQTLNVSTAVSRMKNDIDINVEKIVPEKLYVTSIMA
RSGLLWVGTDQGLILTYPLPKLGGIPKVNGSACISFHGHDGPVRHLYAFK
VQKQNTQNSTKIGKIEKEEELHGEEEGRRSSRFYRSAFEEVDELGLSIEA
LDQVADDEEGEGGEGGPLPVYFEVEADRGVNKSEENGLFVNEAQQHQPTT
DYAEYDNESSYYDKESVDQPINGNDDQPDQSSTSGIPDESTEIGLEETET
PEVDFLEEAKEKKAEPISKEVSNEEREQIVVKTEXF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044883XLOC_044883Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072278TCONS_00072278Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 191..581
e-value: 7.7E-11
score: 40.7
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 197..236
coord: 318..546

Blast
[Close]
BLAST of TCONS_00072278-protein vs. Swiss-Prot (Human)
Match: ARHGA (Rho guanine nucleotide exchange factor 10 OS=Homo sapiens GN=ARHGEF10 PE=1 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 1.656e-37
Identity = 96/312 (30.77%), Postives = 153/312 (49.04%), Query Frame = 0 
Query:  254 TTMKPILWLFSGSDHLGMITLMEMDMASVPKVMESFVACETRICCAERVP-----------EDGFYSLVPYIQNVSVWVGTMAGRILLFDPN---IEERYPSLHTTLKDAVISLKYCRNRMFAGLANGTLACFRRKVEGNWDLSNPTIVCLDTNGVLSMTEVVGHLWCGCASNVYVVNTVTLAIERKLTV---EGGGVKHLVAYGIGVWVSSWRSSKLQLYHAETLDQLQTLNVSTAVSRMKNDIDINVEKIVP--EKLYVTSIMARSGLLWVGTDQGLILTYPLPKLGGIPKVNGSACISFHGHDGPVRHL 546
            +T    LW+ S +  +G I ++     S PKV+E F   E+RI C   VP            D     V      ++ VGT  G I ++  +    + R     T  K  V+SL      ++AGL NG +A + R  +G+WD     ++ L    V S+  +   LW      V++++  T A+E +L     EG  + H+   G+G+W++    S L+L+H ETL  LQ +N++T V  M           +P  ++L VTS++   GLL VGT  G+++  P+P+L GIPKV G   +S+H H+ PV+ +
Sbjct:  917 STAHGFLWIGSCTHQMGQIAIVSF-QNSTPKVIECF-NVESRILCMLYVPVEEKRREPGAPPDPETPAVRASDVPTICVGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTSQSLYAGLVNGAVASYARAPDGSWDSEPQKVIKLGVLPVRSLLMMEDTLWAASGGQVFIISVETHAVEGQLEAHQEEGMVISHMAVSGVGIWIAFTSGSTLRLFHTETLKHLQDINIATPVHNM-----------LPGHQRLSVTSLLVCHGLLMVGTSLGVLVALPVPRLQGIPKVTGRGMVSYHAHNSPVKFI 1215
The following BLAST results are available for this feature:
BLAST of TCONS_00072278-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARHGA1.656e-3730.77Rho guanine nucleotide exchange factor 10 OS=Homo ... [more]
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