TCONS_00072215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072215
Unique NameTCONS_00072215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072215 ID=TCONS_00072215|Name=TCONS_00072215|organism=Clytia hemisphaerica|type=transcript|length=593bp
TCGTGTAAGCTTGTAGTTAATTACAAAAATGGCTGAAGTAGGATGGGATG
ATGTCACTTATCTCCGGAAGAAAACACCAAAGGCTGCTGAAGCTCGATCA
AGCAAAgcTGTCAACAGTGCTATGAGATCAGGGACTGACATTGAGACATC
AAAAAAATACGGTGGTGGTGGTAATAAGCAACACATGGGATCACGTGACT
CAGCTGCCGTATGCCGAGACACAGAAGAAACCAAAATCGAAACGGTATCA
TTAGATGTCGGAAAATTAATACAAAAGGGACGAACGGAAAAAGGATTAAC
GCAAAAAGAACTGGCTACACGGATCAACGAGAAGCCGCAGGTGATAAACG
ACTACGAAGCTGGAAGAGCTATCCCAAATAATCAAATCCTCAGCAAGGTC
GAACGCATTATCGGCTTGAAACTGAGAGGCAAAGACAAAGGAAAACCTTT
CGGAGGACCAAAGggaaaaaagtgacgaaaagGCTCTCACATCACAAAAG
TCGTGTTTCGTTattgacgtcagcatttttttgtaattattaccATACAT
CTCTTTATTTTCCTTCCAATAAAAAACTAGAAAATAATTATGA
Run BLAST on NCBI

protein sequence of TCONS_00072215-protein

>TCONS_00072215-protein ID=TCONS_00072215-protein|Name=TCONS_00072215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MAEVGWDDVTYLRKKTPKAAEARSSKAVNSAMRSGTDIETSKKYGGGGNK
QHMGSRDSAAVCRDTEETKIETVSLDVGKLIQKGRTEKGLTQKELATRIN
EKPQVINDYEAGRAIPNNQILSKVERIIGLKLRGKDKGKPFGGPKGKK
Run BLAST on NCBI

transcript from alignment at scaffold_71:1173861..1179837-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072215 ID=TCONS_00072215|Name=TCONS_00072215|organism=Clytia hemisphaerica|type=transcript|length=5977bp|location=Sequence derived from alignment at scaffold_71:1173861..1179837- (Clytia hemisphaerica)
TCGTGTAAGCTTGTAGTTAATTACAAAGTAAGGTTACTATAACTATAATT
ATATGAAATTATGAAATAACAGGGTTTTCATCTAAGTTTGTGTATTACGA
TTCATAATCGTTACTAGTATAGTTTTAGGCTGTCTGCGTCGACTGAACAG
ATAAATTCATTTTGGGAGCATCCAGCTTGTTTTAGATGATCCTTTGACTC
CTTCATTATTTGAGGAATTCCATTATTTGATTGAGGGACAGACTAATTTA
TTATTTTACCAATTTACTACACCAAGAATGGCTGAAGTAGGATGGGATGA
TGTCACTTATCTCCGGAAGAAAACACCAAAGGCTGCTGAAGCTCGATCAA
GCAAAGTAAGATTTTGATGAATGAATAGCTATTTTTTTAAAACCTTCTAC
TGCTATTTCCCTTTCTTTTCAAATTGGGCCGTTTTAGTAGCATCATGGTA
TTAACCTTAAATATTTTTTTGCGTACCGTGAAGTCGGGTAACTTGCATCA
GTGGAGACTAACATGCATAGTATCAGGTATCAAAGATTTTAATGCTGACA
AGTTGACAGAACACATTATTGACAAAAGTAATCCCTGAGAGATTACCTGA
AAACTTAATTTCTAGTTTGGCAAATCTCCACAAAGATTAGCAAACAATCA
TTTTTTCCCACTTACAGCTTTTCTCTTTGATCTTTTATTGTTTTTTGTTT
TTTTGTTGATTGCTTAGCTTGCACCATCGACAACTCACACATCATTTCTT
GAAAGGGAAACACGGTTTTTCCCAAGCTGTAATGTTGACATACCTTGTTT
TAATTTAATTTAAAGTAATGATAACTTAAAATTTAAGTCAGTTAGTGGAA
GTACTTTGATTTGTGAAGCGTTTTTACGTCACATAGAACAAAAGAAAATA
GTAAAGGAACAAAGGACTAACCCATAGCCACCATTTCTCAACCATGGGGA
ATCGACCATTCTTCCCCATAAATGCGATAAATGAAGAAGCTTTCGATTTC
TGATTGCCTGTCTTTCTAATCTGCCAGAAAGTGTTACCGTCAACCTGCTC
TAGCTTGGGACTATCTGACAAAACATTGGACGGCAATTCGGCCACCATTT
CACCGAACCTCCGAAGTCATTTGATTTGAGTTAATGAACGGGGTATTAAA
AATACACGATTTCTCTTTTGCACCTAGTATGCTTTTAAATCGCAATATGA
AAAAATCCGTATTGGAACACACGGGAGTGTGTCTGGAAGGAAAAATTTGA
CAAATTTTTTGTCAAAGACAGTTAGGAACATTTGATTCAAAAATCTTTGG
TTTTTTGAAAAGAATACCCTCCAGTGAACATAAAATATTATTACGAAAAC
GTTTGAAAATTCGTTAAAAAAAGTCTATTGATCAAAATTGACAATTTCAT
TTTTTGCTTGTCGAAGGTTGGAGCTTGCCCAAGCACATTACAGGCAAAAT
TTAAAAATACAGTTGNTATTTCGGAACAGTTTTCTAAGTAAAATTCTCGA
AAAAAATTCGAGCGAAATATCAAGAACTACAGTTGACGCTCTCTAATTCG
ACGTTCTACTATTCGATAGGCTCCCTTATTCGATGAAATTTAAAGTCCCC
GTCAACAGAAAACTCTAATAAACGACGCTCCCTTATTCGATAAGCTCACT
TATTCGATGAAAATCCGATTCCCCTTGAAGAACGAATTAGAGAGTGTCAA
CTGTATCAATTTTTGCTCTTAGACTTCTTAAAAAGGATTTTCAGACTTTT
TCGTAATAATATTTTTTGTTCACTGCAAGGTATTCTTTTCAAAAAACCAA
AGATTTTTGAATTTTGAATTTTTATTTTTCGATGACGTCATGTTTTATGG
CGTCATTTTGCCTTATTTCCTTAATATCTCCTGATATATTCATTTTCAGA
TATAGGTTGTGACCTTTTTCTTTATCAGTATTTCATGCTCTTTCGAATGA
AACAAACAATTTTCAATTCTGATGACTTTTTATTTTGGTTGCCATAGTAA
CCAATGACGCCAGTTTCCATGGCAACGGGTGGTCACACCCGGCCCCACCT
CTCAAATTTTGATCTTCTACATTCAAGGAACAATATTCAATCATAAAATC
CCTTTGCACAAGCTGCTGCACACAGGAAGCTTTTTCGCGACATAGTGGCC
CCTACTATACGTCAAACCACGCAGTGCTGACTTTTAGTTTTATGACTTGT
TCTCACTCGTTTGGTTTCCATAATAAAAAGAAAGTCGTTATTTTGAACTG
TGAACATGCTTAAAATCGAGGTACTTCCACTAACTATAAGTTAGCCTTTC
CTCTTTAGGCGAAAAGCTTAGATAACATTTTTAGCTTTCTCACAATCTTA
ATTCATACTTGTACACTTTTTTTTGAAACTCCCCAGGGCTCGAAATAACG
GTCGGACATCAGACATTGTCCGACCCAAATAGCTTTATGTCCGACCCAAA
AACATTAATTTTCAAGCTAAAGCAATCCTGATCAGACATTTTGTCCGACC
CACTTAAAATCGTTATTTCGAGTCTTGTAGTACTGGGTAGTACTACAAAT
ATATTTCAGACAACCAAAATTATTTTAAAGAAGAAACCCTAACTTACTAA
AATAGTAGAAAATCATCTCATTTCGACAGGCTGATACATGTTAGAATTCT
CGTTCGAATGATACAGGGGCCGTATAATGAATCTTTATTTTTCTTTAGGC
TGTCAACAGTGCTATGAGATCAGGGACTGACATTGAGACATCAAAAAAAT
GTAAGTTAAATTTGTACCTAATTATTAAAGACCTTTTTTTATACAGCATA
TTTTTTTGTTGATGAAAGGAACTTTCATAATTTCACTTTTAAATATCCCA
GACTATGTGGGTCAGAACCTTGGGTTTTTCCAAATTGCTTCAGTCACTTT
GCCGTCCTCAAAAATGCAATACACAAACTCGCTTTCATTACCTAGTTTAT
GTATACGTGTGTGGCTTTTCTGCAATGGAGACGCTCATGTTCTAATTTGA
CTAGATGCTGGCCAGCTGAGGACGACAGTAAATCAACACTTTCACCGTCC
TCGATTTTGTGGGTACATAAACTCCTATCATTTTCCTTTCAGACGGTGGT
GGTGGTAATAAGCAACACATGGGATCACGTGACTCAGCTGCCGTATGCCG
AGACACAGAAGAAACCAAAAGTATGTTTTATCTTTGACAATTGTGTGTTT
ATTGCATTGTGATATTCTTTTTCCAGCAGTGTTGGAACCCGCCTCCCCCC
ACCTTAAAAATACACACAATTTAAAGATAGAATTAGTTTTCTCTCAAGCT
TAGGGAGTTGTCTTTTATTTTTATGGAGTAGAGTGTGCTCGTTGCTTGAT
ATGTAATGTACGTATCTAATGTCAACAACCCTTTTTAACCCCAACATCCT
TTTTTAGTTTTTTTTATCGGCAGGTACAAAATGCATAAGACATAATGCAT
ATTGCATAATGAATAATAGTATAGTGTAATTTACAGAACGATTTTATATT
TTCTAAAACTCTCCTTTGTAGAGGCTAAAACCGCGAAAACCTCTTTAGAA
GAGTTTCTTCAGGTTTCTTAAGTAAATATTCCAATCAGAGGAATTTCCCC
AGACATGATATTTACTTTTCGAATCCGAACGAAAGAGAAGACATTCGAAT
CATAACAACAAAGGGTTTTCCGTCAGCATGAATAATACGAAGATGCAACA
GATCAGAAAGGTTCCCCCCTTCTTCCTTCTCTAAAAAAGGTAAACACATA
AACATTCGAAAATGTAAAAAGATTCGAAGTCTATTTTCTTTGATCTAGCT
TTCGCATGAAGCTCTTTAATTTATATTGGCTAGATACTGGATTATCTAGC
AAAAAGCATTCACATGGTTAATGCTTTGTAAGAAGGAAAACCCGTTGCAA
TTTATTAGCAATTGTTCGAAAAGATCTCTGAGAAAACCAGAATAAAGATC
TTGCTATAAAATTTACGTTTTTGAGTTAGAAAAGTAATATACGGAGAAGA
TATTTTCGTGTTTTTTCTACACTTTACTACGTTCTGTAAAATAAAACTAT
GAAAATCATAATGGCGACAAGCATTTTCAGTGGATCACGGATTTTCTTTA
CCATCCAAAATTCAAATTTACAGCATTCTACCCTTTATTTTCTGGTAGAA
AATGGTATATTTGTTTTGTTGAAAGTATTATCTTTCATAACTTCTTATTA
TAGCCTCTAAAATTGACATTTTTCAAATATTATACATTATGCATTATGCA
ATATGCAATATGTTTTATGTATTTTGGATCTGTCAGTTTTTTATATCTAA
CTACATAAGCCTTGTGAATTATTTTCTCAAATAAAGGGATTTGAACGAGG
AGAATCTAGAGATGAGAAAGATTCTTATTCAGCGATTCCGATCTCTAAAT
CCGAATTCTGAACTCTAAAGAAGAATTACAGAACTAGGAGAGGGTTGTCG
AGGTTAGACTAATTTACGGTTTGACTGCTACAGTGACTGTATCAAGCTGC
ACAAATTGTAGGTTAAAACTCTAATTTAGGTCTTGATAATAATAATAATA
ATTTTCAAATTGTTCCTTCGTGTCACTTTGCTCAATAATTCGTTTAGAAA
TCTAACGTTTTTCGTTTTCGTGTGCCAGGGAACCTATATGTGCTAACTCA
CTCCATCACTCCACTTACATTTTTGTTTTTCTTTTTCCTATTAGTCGAAA
CGGTATCATTAGATGTCGGAAAATTAATACAAAAGGGACGAACGGAAAAA
GGATTAACGCAAAAAGAACTGGCTACAGTAAGTCTTTTTGTTGTTGTTGT
GATTTATTTTGTATCTTCATACATAGATTTTTTGTTCTAGTGTCGTAAAA
ATATGGCAGTGGATTCATCAGCTGTTGGGAAACGTCTTATCGATGAAATG
GAAGGGGGATTTTTCATAGATTTGAATTTTGGAAGTAGAGTAGCGAACAC
TCGTTAATAATTTATTTCAATATCTTCTCGTGTTATTGCAATTTTATTAT
GAAAAATTTGTTAACTGTATAACCTTATTGTTGCACTTGTTAGCGGATCA
ACGAGAAGCCGCAGGTGATAAACGACTACGAAGCTGGAAGAGCTATCCCA
AATAATCAAATCCTCAGCAAGGTCGAACGCATTATCGGTAGGTCCCAGCC
TCTTCTAATCTACTGTATATTGATTTCCAAAAGAAGTTTCATACACCACC
TTTTTAACTTTCTCTGTGTTCTTTGTTATGCCGTTAGGGGCAAGACATAA
AGTACTTACGCAGTGAAGGGGGAAGAGGGGGCTTAGCAAAAGCGTACGTC
TATTGTTTGAATGATGTCATTTTTATTGTTCTCTGTGTACAAGGGGGGAG
GGGGTATCAAATATTTAGAAAGCTTTGTGAACGTACTATAATATGGATTA
CCTGACAGTACACCTTTTTGACCGGAGCCACCAATTTACGCGCGGGCATT
TTTTTGTCCGCTTTATCCCACTAAAACCGTCCCAGTCCTTTTTTCACACC
TATAGACAATAGAAAAATATGTCAAAAAAGGATTGGATGGATAGTGGGAT
AAAGCGGACAAGAAAATGCCCACGCGGCAATTCGCGACTACGGTCGAAAA
GGTGTATTTTCGATAGCGATGTTAAATTGACCGGCTTTGATTTAGGCCCT
GCACTATGCAGAAAGAACGAGGCACGTATCAGTACGTGTCTTTTGATTCT
TTTGTAACCCCCTAGTATGAGTTTTGTGTTCCCATACAAAGCGCCTTAGA
CTTTATTATTTACTGTATTGAACCTCAAATTTTTCTTCAACATTCAGGCT
TGAAACTGAGAGGCAAAGACAAAGGAAAACCTTTCGGAGGACCAAAGGGA
AAAAAGTGACGAAAAGGCTCTCACATCACAAAAGTCGTGTTTCGTTATTG
ACGTCAGCATTTTTTTGTAATTATTACCATACATCTCTTTATTTTCCTTC
CAATAAAAAACTAGAAAATAATTATGA

Coding sequence (CDS) from alignment at scaffold_71:1173861..1179837-

>TCONS_00072215 ID=TCONS_00072215|Name=TCONS_00072215|organism=Clytia hemisphaerica|type=CDS|length=2682bp|location=Sequence derived from alignment at scaffold_71:1173861..1179837- (Clytia hemisphaerica)
GCTTGAAACTGAGAGGCAAAGACAAAGGAAAACCTTTCGGAGGACCAAAG
GGAAAAAAGTGACGGATCAACGAGAAGCCGCAGGTGATAAACGACTACGA
AGCTGGAAGAGCTATCCCAAATAATCAAATCCTCAGCAAGGTCGAACGCA
TTATCGTCGAAACGGTATCATTAGATGTCGGAAAATTAATACAAAAGGGA
CGAACGGAAAAAGGATTAACGCAAAAAGAACTGGCTACAACGGTGGTGGT
GGTAATAAGCAACACATGGGATCACGTGACTCAGCTGCCGTATGCCGAGA
CACAGAAGAAACCAAAAGCTGTCAACAGTGCTATGAGATCAGGGACTGAC
ATTGAGACATCAAAAAAATATGGCTGAAGTAGGATGGGATGATGTCACTT
ATCTCCGGAAGAAAACACCAAAGGCTGCTGAAGCTCGATCAAGCAAAGCT
TGAAACTGAGAGGCAAAGACAAAGGAAAACCTTTCGGAGGACCAAAGGGA
AAAAAGTGACGGATCAACGAGAAGCCGCAGGTGATAAACGACTACGAAGC
TGGAAGAGCTATCCCAAATAATCAAATCCTCAGCAAGGTCGAACGCATTA
TCGTCGAAACGGTATCATTAGATGTCGGAAAATTAATACAAAAGGGACGA
ACGGAAAAAGGATTAACGCAAAAAGAACTGGCTACAACGGTGGTGGTGGT
AATAAGCAACACATGGGATCACGTGACTCAGCTGCCGTATGCCGAGACAC
AGAAGAAACCAAAAGCTGTCAACAGTGCTATGAGATCAGGGACTGACATT
GAGACATCAAAAAAATATGGCTGAAGTAGGATGGGATGATGTCACTTATC
TCCGGAAGAAAACACCAAAGGCTGCTGAAGCTCGATCAAGCAAAGCTTGA
AACTGAGAGGCAAAGACAAAGGAAAACCTTTCGGAGGACCAAAGGGAAAA
AAGTGACGGATCAACGAGAAGCCGCAGGTGATAAACGACTACGAAGCTGG
AAGAGCTATCCCAAATAATCAAATCCTCAGCAAGGTCGAACGCATTATCG
TCGAAACGGTATCATTAGATGTCGGAAAATTAATACAAAAGGGACGAACG
GAAAAAGGATTAACGCAAAAAGAACTGGCTACAACGGTGGTGGTGGTAAT
AAGCAACACATGGGATCACGTGACTCAGCTGCCGTATGCCGAGACACAGA
AGAAACCAAAAGCTGTCAACAGTGCTATGAGATCAGGGACTGACATTGAG
ACATCAAAAAAATATGGCTGAAGTAGGATGGGATGATGTCACTTATCTCC
GGAAGAAAACACCAAAGGCTGCTGAAGCTCGATCAAGCAAAGCTTGAAAC
TGAGAGGCAAAGACAAAGGAAAACCTTTCGGAGGACCAAAGGGAAAAAAG
TGACGGATCAACGAGAAGCCGCAGGTGATAAACGACTACGAAGCTGGAAG
AGCTATCCCAAATAATCAAATCCTCAGCAAGGTCGAACGCATTATCGTCG
AAACGGTATCATTAGATGTCGGAAAATTAATACAAAAGGGACGAACGGAA
AAAGGATTAACGCAAAAAGAACTGGCTACAACGGTGGTGGTGGTAATAAG
CAACACATGGGATCACGTGACTCAGCTGCCGTATGCCGAGACACAGAAGA
AACCAAAAGCTGTCAACAGTGCTATGAGATCAGGGACTGACATTGAGACA
TCAAAAAAATATGGCTGAAGTAGGATGGGATGATGTCACTTATCTCCGGA
AGAAAACACCAAAGGCTGCTGAAGCTCGATCAAGCAAAGCTTGAAACTGA
GAGGCAAAGACAAAGGAAAACCTTTCGGAGGACCAAAGGGAAAAAAGTGA
CGGATCAACGAGAAGCCGCAGGTGATAAACGACTACGAAGCTGGAAGAGC
TATCCCAAATAATCAAATCCTCAGCAAGGTCGAACGCATTATCGTCGAAA
CGGTATCATTAGATGTCGGAAAATTAATACAAAAGGGACGAACGGAAAAA
GGATTAACGCAAAAAGAACTGGCTACAACGGTGGTGGTGGTAATAAGCAA
CACATGGGATCACGTGACTCAGCTGCCGTATGCCGAGACACAGAAGAAAC
CAAAAGCTGTCAACAGTGCTATGAGATCAGGGACTGACATTGAGACATCA
AAAAAATATGGCTGAAGTAGGATGGGATGATGTCACTTATCTCCGGAAGA
AAACACCAAAGGCTGCTGAAGCTCGATCAAGCAAAGCTTGAAACTGAGAG
GCAAAGACAAAGGAAAACCTTTCGGAGGACCAAAGGGAAAAAAGTGACGG
ATCAACGAGAAGCCGCAGGTGATAAACGACTACGAAGCTGGAAGAGCTAT
CCCAAATAATCAAATCCTCAGCAAGGTCGAACGCATTATCGTCGAAACGG
TATCATTAGATGTCGGAAAATTAATACAAAAGGGACGAACGGAAAAAGGA
TTAACGCAAAAAGAACTGGCTACAACGGTGGTGGTGGTAATAAGCAACAC
ATGGGATCACGTGACTCAGCTGCCGTATGCCGAGACACAGAAGAAACCAA
AAGCTGTCAACAGTGCTATGAGATCAGGGACTGACATTGAGACATCAAAA
AAATATGGCTGAAGTAGGATGGGATGATGTCACTTATCTCCGGAAGAAAA
CACCAAAGGCTGCTGAAGCTCGATCAAGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044837XLOC_044837Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072215-proteinTCONS_00072215-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072215-exon-scaffold_71-1575043694:1179811..1179837TCONS_00072215-exon-scaffold_71-1575043694:1179811..1179837Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1575043694:1179483..1179561TCONS_00072215-exon-scaffold_71-1575043694:1179483..1179561Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1575043694:1177088..1177139TCONS_00072215-exon-scaffold_71-1575043694:1177088..1177139Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1575043694:1176668..1176745TCONS_00072215-exon-scaffold_71-1575043694:1176668..1176745Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1575043694:1175061..1175143TCONS_00072215-exon-scaffold_71-1575043694:1175061..1175143Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1575043694:1174701..1174794TCONS_00072215-exon-scaffold_71-1575043694:1174701..1174794Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1575043694:1173861..1174040TCONS_00072215-exon-scaffold_71-1575043694:1173861..1174040Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1510915933:1179811..1179837TCONS_00072215-exon-scaffold_71-1510915933:1179811..1179837Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1510915933:1179483..1179561TCONS_00072215-exon-scaffold_71-1510915933:1179483..1179561Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1510915933:1177088..1177139TCONS_00072215-exon-scaffold_71-1510915933:1177088..1177139Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1510915933:1176668..1176745TCONS_00072215-exon-scaffold_71-1510915933:1176668..1176745Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1510915933:1175061..1175143TCONS_00072215-exon-scaffold_71-1510915933:1175061..1175143Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1510915933:1174701..1174794TCONS_00072215-exon-scaffold_71-1510915933:1174701..1174794Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1510915933:1173861..1174040TCONS_00072215-exon-scaffold_71-1510915933:1173861..1174040Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1491911889:1179811..1179837TCONS_00072215-exon-scaffold_71-1491911889:1179811..1179837Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1491911889:1179483..1179561TCONS_00072215-exon-scaffold_71-1491911889:1179483..1179561Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1491911889:1177088..1177139TCONS_00072215-exon-scaffold_71-1491911889:1177088..1177139Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1491911889:1176668..1176745TCONS_00072215-exon-scaffold_71-1491911889:1176668..1176745Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1491911889:1175061..1175143TCONS_00072215-exon-scaffold_71-1491911889:1175061..1175143Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1491911889:1174701..1174794TCONS_00072215-exon-scaffold_71-1491911889:1174701..1174794Clytia hemisphaericaexon
TCONS_00072215-exon-scaffold_71-1491911889:1173861..1174040TCONS_00072215-exon-scaffold_71-1491911889:1173861..1174040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1173861..1179837 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
193.053	213.701	135.698	99.7484	0.00169584	0.000714076	0.30245	0.00961485	156.118	112.942	59.9368	109.622	119.001	136.746	143.874	152.861	174.068	148.821	87.5227	114.434	83.4144	108.046	98.4077	90.3985	0.0172278	0.333401	74.8539	56.0881	70.7202	64.6766
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR013729MBF1_N
IPR010982Lambda_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
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BLAST of TCONS_00072215 vs. Swiss-Prot (Human)
Match: EDF1 (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.047e-52
Identity = 82/132 (62.12%), Postives = 105/132 (79.55%), Query Frame = 2 
Query:   29 MAEVGWDDVTYLRKKTPKAAEARSSKAVNSAMRSGTDIETSKKYGGGGNKQHMGSRDSAAVCRDTEETKIETVSLDVGKLIQKGRTEKGLTQKELATRINEKPQVINDYEAGRAIPNNQILSKVERIIGLKL 424
            MAE  WD VT LRKK P AA+A+S +A+ +A R G D+ETSKK+  G NKQH  ++++A + R+TEE   + V+L+VGK+IQ+GR  KGLTQK+LAT+INEKPQVI DYE+GRAIPNNQ+L K+ER IGLKL
Sbjct:    1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKL 132
The following BLAST results are available for this feature:
BLAST of TCONS_00072215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EDF11.047e-5262.12Endothelial differentiation-related factor 1 OS=Ho... [more]
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