TCONS_00072215-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072215-protein
Unique NameTCONS_00072215-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length148

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072215-protein ID=TCONS_00072215-protein|Name=TCONS_00072215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MAEVGWDDVTYLRKKTPKAAEARSSKAVNSAMRSGTDIETSKKYGGGGNK
QHMGSRDSAAVCRDTEETKIETVSLDVGKLIQKGRTEKGLTQKELATRIN
EKPQVINDYEAGRAIPNNQILSKVERIIGLKLRGKDKGKPFGGPKGKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044837XLOC_044837Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072215TCONS_00072215Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR013729MBF1_N
IPR010982Lambda_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001387Cro/C1-type helix-turn-helix domainSMARTSM00530mbf_short4coord: 80..135
e-value: 8.8E-10
score: 48.5
IPR001387Cro/C1-type helix-turn-helix domainPFAMPF01381HTH_3coord: 81..132
e-value: 2.1E-11
score: 43.6
IPR001387Cro/C1-type helix-turn-helix domainPROSITEPS50943HTH_CROC1coord: 81..135
score: 12.238
NoneNo IPR availableGENE3D1.10.260.40coord: 65..134
e-value: 4.6E-12
score: 45.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..59
NoneNo IPR availableCDDcd00093HTH_XREcoord: 78..132
e-value: 4.76672E-10
score: 50.6294
IPR013729Multiprotein bridging factor 1, N-terminalPFAMPF08523MBF1coord: 6..73
e-value: 2.6E-18
score: 66.1
IPR010982Lambda repressor-like, DNA-binding domainSUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 75..132

Blast
[Close]
BLAST of TCONS_00072215-protein vs. Swiss-Prot (Human)
Match: EDF1 (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.465e-61
Identity = 92/148 (62.16%), Postives = 116/148 (78.38%), Query Frame = 0 
Query:    1 MAEVGWDDVTYLRKKTPKAAEARSSKAVNSAMRSGTDIETSKKYGGGGNKQHMGSRDSAAVCRDTEETKIETVSLDVGKLIQKGRTEKGLTQKELATRINEKPQVINDYEAGRAIPNNQILSKVERIIGLKLRGKDKGKPF-GGPKGK 147
            MAE  WD VT LRKK P AA+A+S +A+ +A R G D+ETSKK+  G NKQH  ++++A + R+TEE   + V+L+VGK+IQ+GR  KGLTQK+LAT+INEKPQVI DYE+GRAIPNNQ+L K+ER IGLKLRGKD GKP   GP+ K
Sbjct:    1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEKGPRAK 148
The following BLAST results are available for this feature:
BLAST of TCONS_00072215-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EDF13.465e-6162.16Endothelial differentiation-related factor 1 OS=Ho... [more]
back to top