TCONS_00072113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072113
Unique NameTCONS_00072113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072113 ID=TCONS_00072113|Name=TCONS_00072113|organism=Clytia hemisphaerica|type=transcript|length=1488bp
GTGGACCACTTATATTGAGTCGCTGGGTCCGCTTGCTGACTTGAACGTGG
CACCGAGAGTTCAAAAATTTCACCACTGACCTCACAGCTCATTTAGTCCA
ggaatttttagatattttttagCTGCCTGTGTGCAGTGGAAGTATTGGAA
AGATGCTGCCAATAACAGACTATCAGAagATTGGAATCGGCGTCACAGGA
TTTGGTATGCTATTCCTTTTCCTTGGAATGCTTTTGTTCTTTGATCGTGG
TTTGTTGGCAATAGGAAATatCCTTTTCATATCTGGTTTAGCATTGGTGA
TTGGCCTTGAAAGAACATTCAGATTCTTTTTCCAAGTAGAAAAATTGCGC
GGAACAGCCTTCTTCCTTGGTGGAATATGTATTGTGTTGTTAGGGTGGCC
CTTTGTAGGAATGATTGTTGAAATTTATGGTTTCGTTCAattgttcaaAG
GATTCTTTCCAGTTGTTATAAATTTCCTTCGGCGAGTTCCAGTTCTAGGG
AATCTCCTACTTTTACCAGGAATTAGCACTTTTGTCAATTACATTGCGAA
CGATCCAAATAGCATGAATGCAGAGAAATCTATGCGGTAGGGATGTTTGT
TGTGTTGGTGGATTACTAGATTCGTGATTGGCTCATCGAAAGACCTATGT
AATGAAGTGTAGCTGAAGACTAGAATTGATTTTCCTATATAGATTTTGAA
GCCACTAATTTCCCACCTAAGTTGCGCAGTCCGcctggttttcacacaaa
cgcttggttgaaataaacattttaacaacaaatttaagaaaatatgGACC
ACTAGATgacaaagaaatattttaagcttctctTTCTTTGCCTGGAAAAG
GTTacagattcgcttctagccttCGGTTATGCTTCATACAATTTCATCAt
ttatttataaatttctttttctttgtactCTGATCGACCTGTATTCTAGT
GGTGTTTTTTGCAGGTAGTGCAATAAGGGCAGTAATCAAACTATTAATGC
ATACCTTAGCACCTGTTCTGAGagaaatataaagaaattaCAACTGCTGA
TAAGCTGGACAGTGAGTCATTAAGGGTTTGATATTTTGTCCTTTATTTTC
TATATATTgtgaggtttgtttttgttaaatatGTCACACCTATCACTGAT
ATTGCTCTCTGAAGAAAGATATTTTGTACCAGATTCTGAAAGTTTTGATA
AAAGTGCCAGTCATCCGTTGACTTCGTTCTTTGCAAtgatttgataaaat
atattatttttcattctatTCTCAAATTTATCAAATCTACGTTGAAGTTC
TCCTTGTTTTCCGAGCTGGGATTTTTACCTTttatttagttttgattttt
ttacatattatgTACATAAATTAGGAGAAAACACTGCGAATTATAGTTGA
ATATAAATTTTCTATTTAAAACAAATCTAGAAACGCTgttttctttctat
tttctttttttctgatcCACTCGATTTAATTGGATCAT
Run BLAST on NCBI

protein sequence of TCONS_00072113-protein

>TCONS_00072113-protein ID=TCONS_00072113-protein|Name=TCONS_00072113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MLPITDYQKIGIGVTGFGMLFLFLGMLLFFDRGLLAIGNILFISGLALVI
GLERTFRFFFQVEKLRGTAFFLGGICIVLLGWPFVGMIVEIYGFVQLFKG
FFPVVINFLRRVPVLGNLLLLPGISTFVNYIANDPNSMNAEKSMR
Run BLAST on NCBI

transcript from alignment at scaffold_71:397350..408087+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072113 ID=TCONS_00072113|Name=TCONS_00072113|organism=Clytia hemisphaerica|type=transcript|length=10738bp|location=Sequence derived from alignment at scaffold_71:397350..408087+ (Clytia hemisphaerica)
GTGGACCACTTATATTGAGTCGCTGGGTCCGCTTGCTGACTTGAACGTGG
CACCGAGGCGAGAGTTCAAAAATTTCACCACTGACCTCACNTTGCTGACT
TGAACGTGGCACCGAGGCGAGAGTTCAAAAATTTCACCACTGACCTCACA
GCTCATTTAGTCCAggaatttttagatattttttagCTGCCTGTGTGCAG
TGGAAGTATTGGAAAGATGCTGCCAATAACAGACTATCAGAGTAAGCTTA
GAATTATTTTCCTagctattttttttatataatttaatGATCTATTATTT
TCTCTCCTACTACTCAATCAAACCAGACGTCTTCTGCGCTTGATAGGATC
GATCATGGGAacggattacttaacgatccagataggagatcgatagagga
tcgaaactcaagatttttttaagcttatgattagttatcgattatttatc
gatctatcgtcgatcttttatcgatcttcagtcaggcacatcctggcaaa
tgaacggggtgagcatttgcatggggtattcgtcacccagtgcaaatgag
ataggacgtctcaggctaaaagcgtgaaaatgaataaaaatgaacttcaa
actgaaaacgggaaaaaaggaagaaaaccgggaactttattttttcgtta
aaagtttcttcaatcttcgaagacaaaattgaccgatggaaaaaaaattt
catctatgcagttcttcaaaatgaagcaaaatatttccaacccagttcaa
ttgcgtggggtatcagttacatcaatatgccttcttacctgtctttaaaa
atataaataaaagtaatcacggaaaaggacgcgaaaaaaaaagacatNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNggtgtagcgaaaggatacttttgccaccggacaaatacaccg
gacagtccggtgcatCAGCAGGGTCCTTATCGACCCTATTGactcataca
cgtttttttttttataagaacatcctaaatatttgaagccttcggatgtt
cttaactttttgagttttaagccttaaaatgttcttaagatgttcttaat
ttttcttgatttgtaaGTCTTAAAAAATTGCTCACAGGAGACCTGACTGG
TCAGCTGGCTTCAAAAAATTATCGAATTACACCAATTAGCCTTAAACTAA
CAGCAGTAGGTGTCTATGTAATTatgtaaaaaaggaaaaacatgaCACCT
TTTGACTTTCTTGCGCTTTGTGATTCATAATCGACCTAATTTGTTGATTA
TATCATTACAACATTTGTCATCATGGACAAACGctaaacaaaatttttag
tacaaataaaatgattggaaaagaaaagagaaatctTGAAGTGCAACCAC
ACCTGAAACACATGTTTTGTTTGAATTCTATGCATTTATATGAAATCCAG
CTTACAGTATCAGTATACTGTTTTCGAAAGTTTCACTCAACTCGCAAGTA
TGTCAAGGAAACAAAAAGCAACTCAAATGACTCTGGGAGCGTTTAATTTT
ACGAAGAAAGTCAAACATAATGATTTACTTCTTAACATCGCCATTCCTAG
GACAGTTGtcgaaaaagaaattatcaaaaGATTTCCATGCGCTTATTGCC
CGGAgaaatttttagagaaaaaaggACAAGTAGTTCATGAGCAATTTTGC
AAAGATAAAGACCATGAAAAGTGAGTTACATAATAcatattctttttctt
ttatgaatatATACAGTATATACTTTTTAATACTGTACTGTATGCTAGTT
ATGTATTCCTTTACAATATGTATCACTTCTGTACTGTAACCACAGTTCAT
ATCAAACATGATCAAACAgatgagaaaaagattttatatTATGTACTGTA
TAATTTTTAGAGCCCCCGGATTACAACCATCATCACCATCACCAACAACG
CATTCAAATACCGAGACGACCAACGAAACAAATGATGTAGCATGTAATGA
AACAGACGATGTCGTGGTTATTGGATCAATACCAAGTGAACCACATGAGA
ACTCGAAAGACGATCAACCAAAGACCATGAGACGTGGAAAGGATCGCCGA
GAAAAACATTCGATCATCAAGAAGTCGAACGTTATTGACGAAGTGGAGAT
GGGAGAGTTATCAATAGAAGAAATAGCGCAAAGATACAGCATCAATCGTT
CCATGGTAAGACGCGtttcatttcaaacaaaaactttggtCTTAATGGTA
TTAAACCGTATACAGtactgtatgtatgtatgtatgtactGTACTGCGAG
TCACACCTTACAGCAAACCTATCTcaaggtttttcttttttcgattTCTA
GGTTTCGAAATGGATAAAGGACAAGGTCAAAATCAAAGAAGCATCAAAAA
CCGCCCACCGTCTTACATTCAAAATACGTCCCTCAGTGAAATACAAAACA
ATGTATACGGCTCTCCTCGCGAAATTCAAGACTGCACGTGAAAAGGGCTA
TTGTGTCAATTTCGGCTGGTTATGGTCTAAAGCTCGTCAAATTTACAAGG
AGCAAGAAGGTGAAACTGCCATCGTTCGTAAGCATGTTATCACAACCTTT
ATCAAAAGATATAACTTGAGAATGCGtgcaaaacaaagaaatcgGAAGAA
GTCGAAAGAATCGTTTCGAGATGACCTATCAAAGTGGCATGGAACGATGC
GTGAACGCCTAGTTAGGAGCGGAAAGGATGCCAGTTATGATCAAAAATAG
GGTCGCTTTCTACCGACTCAAAGGTTCAACGTTGATCAAAGCCCTTTACC
ATTCGCCATCAACACCAAACGTACATACGAGCTGGTTCAAAAAGGAGACC
GTTACCATAAAGTATGGATATCGCAGCCAGGGAGTGGTCTTGAGAAAAGG
CAATGCACCTTACAGGTTTGCTTTCGCCCAACAGGAAAACAACCCAAACT
TGCCATCATTTTCCGTGGAAAAGGTAAAAGGATTAAGAAAGAGGAGAAAG
AAGCGTGGCACAAGGACGTCGATGTCTACTTTCAGGAAAATGCATGGGCG
GACACAGATTTCTCTGTTGCCTGGGCAAAGAAAACGCTTAAGCCGGAGGt
cgagaaagaagaaagattcgCCCTGTTCTGCGATAATCTGACAGCACAAG
TCTCTGACGAATTTAAAAAAGAGATTTCCAGTCAATCTGGTGTTTGCTGG
TTTGGTCTTCCCAATGCCACTGATCTTTGGCAACCCGTAGATGCTGGGTA
CGCGGAGCTGCTTAAAATATTCGTTCAACAAGTCCAGCATGAGTGGTTGG
ACAATGAAGACAATGCCGAAAGATGGTATGGAAACGAATCAGGATTTTCA
GCAAAGGACCGACGCATCCTTATCACCCTTTGGGCTGGAAATGCTTACCA
AAAGCTCATATCCGAAGACTATGATGACTTCCGATGGCGTCTTTTTGAAA
AGACAGGTTGTCTCATCACAGCAGATGGATCTGGAGATGACAAGATCGCA
CCAGAGGGTCTACCGGATTACAAACCACCACCTCCACTTGATTACATCGA
ACCGTCAACTGCTCCTCCTGTCTCAAATACCGCCGAGGCTGAAGTGCTTG
AAATTGCTGATGATGCAGGAGAGAACAGTGACGAAGAAGGAGAAAGTCTC
CCCGTTGAGGAGTTAATTGATGATCCGAAAGATAGAACGTACGATGACGA
ACTTGTTGGCCGAAGCTTGAAAACACTGTACGAAAATGGCTGGTTCACTG
GAAAAATCAAGTATTTTAACACTGGCATATGCCGCTATTTTGTCCAGTAC
AAAGATAAAACAACAGACTTAATTGATATCGAAGATATAGATGGTGTGGA
gatgattttgatttgaaaattgttgCTCCATACTGtacttttttgtaaat
attctAGACCTTTTAGCTTTTTATTTATTAACATGTGTGactaaattgaa
aaatgttcttcTCTCCATTATTCTTGTTTCTCCTAAGCCTCtgaatgttc
ttagcatgttcttaacattttagtcatcgaagccttatgttcttatatac
tatgttcttataaaaaaaaaacgtgtactcgaTTTatgatcgataacaaa
tcgattaacgatcgatgacgaatcgattaacgatcgatgacgaatcgata
tactcgattgaaatactagctcaataatggatcaacgaaggatcgatact
CAAgactttttaatggctgaatcttccatcaaTCTCCTATCCgcatcgtt
aagtaatccatcgatcacatatcgatccgtcatcgagccgttccgatgat
caatcctatcgagcgcggacgtctggctCAAACTCGCCgacaaccaaaat
aaaaacttaTCCATTCATACTGTCATAGACACTTTGTTAAGACATGTAAT
GCTAAAACTAAAGCCTCATTTgcgtccggtggaaaaaattcAAGTATCAA
AAAGTGACCAAATGGAGGAATCCAACTCAACTGGAACCTATATAAAACCA
AAGTGGGAAAAACATACAGTGTGTTTTGTTTTCGATAAATAAACTCACTT
TTTCTTTAACCTTTTTGACCCCGAATGCCGTAGATATACGTCCTtgatac
cgtgagtggtcctaaatccgacagccctgcccaaatccgatggggtcttt
taaagatacaaactaaaataaaagcaaacctttcgctgtgacgcaataaa
gataccaaagtgtcaactaaactgagagatttgatacaaaTTGATTTGAA
CCAAATTACAATAATTgtgcttcttataaaaaacataattttctatacat
aaattgttaacgttttataaacacaagcaacagacagtcagtacctttag
ccaaattaggaacatttttcttacttttactagtattcctaattaggaat
attaGGTTTCtccaaaaatagcaaaaaatcgCACGTTAAAAAGTACTTCG
TAAGATTCTTAccatgagattgggtaacttgcatcagtggaggctaacat
gcatagtcctcaaatgaaagacctggctggtcattaaaatacaaaattaa
atcaaaNCAtcattggaggctaacatgcatagccctcaaatgaaagactc
agctggtcattaaaatacaaaaataaatcaaaacaaaaatggtagagtag
agctgcgagcggagctgcgtagctgtattttaatgaccagccaggtcttt
catttgagggctatgcatgttagcctccactgatgcaagttacccaatct
cacggtaccatTCCATTTAGGTGGGAAAGAAAGACTGAGCTCTTGGCTTG
CTCAGGGGACCGAGCTTCCTAGAAAAAACTTCACTCCTCCCAGCCTCTCC
TCCCAGTAAATTGACATCTTATTTATAAAAAGCGGGAAACtcactttctg
tttttcttcgtGATAATAAAAACGACAGTTCGTTTAATTCctaatttgga
attatttttttggggCGTTAATAATTCCACCATCCgcgaaagaaattttt
caattttttgcacagttatCATATTTGGTATACCAAATCTATTGGTCATA
CTTGGAATTTGCGAATATAGCTCGTTTCAGAGatattaaacttttaaata
tttcttcctaattaggaatcctggtaaaagtaagaaaaatgttcctaatt
tggctaaaggtacTGACTGACAGATTTAGAATAATTATagatagaggtaa
ttatttttacaacttacacttttttgatcacatttttgattgacatttat
agccatcttgttagatgttttgttctgagagtccttgcaatagtttatcg
ttcaacttggagaaggaatttttgtaaacatagaatttttttcataacag
ttatttggagtgtcggaattaggcagggctgttggatttaggaccactca
cggtacatTCTGAATGCCGTACATTATGCAATTTGATAGACACGTCTTTC
TCGGGCCATATCTTTTATTTGCTTGCTTGGTAATCGTTCAAAATTGTGAG
CAGTAGAATGTTTTTTGGATGCTAATTTTTGGTATATGGCTTCAGGAGTA
AGTATATAATGAAAAAATACTAAAGAAAGATAATTAATAATTTTAAACTT
TCCCCACTTCTTTTGCCTAAGAggtgaaaaataccaaaaaagtgACATTA
TCGAAAAACGAGTAAAAAAACTTTGGTAAATGTGAAGCTACCATTTTAGT
TAGAGTATTTTATTAGGAGAGTTACCCCACCTTAAAGCTGCAgaatttaa
ttagcttttcagggatagctaattttttatcaaaagatttctagttcttg
agttatgacaAAATAACCGAACATGtccattttgtcaaaaaatgttgCCA
ACGtacatttttgagtttttcgaaaataaatttttttccagttgtggtcg
gaaattctgatgaaaatcCATGAACATTTGCAAAATGCATTGAAAATTCC
ACTCAGAGAATTTATAGAGTGACATATACAGCAGATACCTGTGAACAGGC
TTCATGAGGTAGGCTTACTGTTATGATCACCATTCCTCCAGGAAGATACC
ACACATTTGCCCatttctgacaaaaggaagtaactgacatttttatgaat
tttcattttttttgcaaaaatgaagCCGATCTCAAAATGTTCATTGTTGC
AGAGAAAAACAAGACCCTTGTTCTGTCAGTAAACCTCGaccaaaagaaat
tgaataaaGAAGCAACTGACAGGTTTCTGGAGAatgttttctgacaaaaa
gaagtaaatgactgttttgcttctttttgtcagaaaaagGTATCACTTAC
TGCCTTTTGtcagaaatatttctttcttcaatttcttttggttGAGGTTT
ACTGACAAAACAAGGGTCTTATTTTTCTCTGCATCAATGAACATTTTGAG
AAAAGCAGTGATGCTATGAACTAATCTTCAATGAGTAGAACAATAATCAG
TCATTTGTTTTTTGATATGTACCATCTGCATCCGATGCCAGCATAAAACG
CGCTTTGTCAATTTTCTCAATTTCAACTTCATGTCAATTACTTCCTTTTG
TCAGAAATGGGCAGAAGAATGGGTGCACCAACAGGAGGGTACACTGCGGT
CTGGGTGCATGCCAGTCTGCTGCCTATTCATAACAAAACACTGCGCTTGC
CTGTGCACACTCGCGTGGGCTACTTGTAAGGCCGGTGCATCATGACAATT
TAGTCATAAGTCAATTGTTGATTCTTAAAGGTTGAatttttcatatcttt
agtTCTCAAACAAAAGTGGGAATTCGATGCAAGCTTTATGGATTTTTCAT
CAGCAAACCATTATATAACTTTTGATGGGAAAACATTCAAGATGTGTTTT
TTAATATATACATCAAAATTGATGTGAATTATGCTCTTTATGCTGTTGCT
TACTTTTGCTATGGCAACAAGTGATGACATTTTACCGATTACTATGCTAA
ATTTAGAAATGTCTTAGTCAAAGAAATGATTTTACATTATAACTCTATTG
TAATTTGAAGTATCATTGGAAGAATAatgtatttgtttttcttttagagA
TTGGAATCGGCGTCACAGGATTTGGTATGCTATTCCTTTTCCTTGGAATG
CTTTTGTTCTTTGATCGTGGTTTGTTGGCAATAGGAAATGTAAGTCTTTC
ATTTATGAAATTTCAGTCTGAATCTATGAATCAAAATCAAATATAGCAAA
AAACAGAAATATTCTTGTGCAACCCTTTATGTTCTTGTTAAATTTGTTTG
ATTGAAATTCTTTATTACTAATGTATTTGATCATTTTCTGAGAAGGTGGG
ATAAAACAGGAATAAATAAGAATGATAGTACAAATTTGATTCAATCTGAA
TATGAAATGATATAAGTGGCTTACTTTTATGCCACTTATTTGTAAAATGT
TCTAAACCTAGGTAACAGCTGAATGAAAATGTTGTATCTACTAAAAGGGA
AACCACGTTCGTTAAAAACTTCGATTACAGCAACCATTTACATTGATTTT
TACTAAATGCTTGATTGCTATTACCAAGTAACAATACCAAGTTATGATAA
TAAGAATGAAATGTTTTGAAGTGTACACTTTTTATcactctttttcaaaa
tatgttttatttttatagatCCTTTTCATATCTGGTTTAGCATTGGTGAT
TGGCCTTGAAAGAACATTCAGATTCTTTTTCCAAGTAGAAAAATTGCGCG
GAACAGCCTTCTTCCTTGGTGGAATATGTATTGTGTTGTTAGGGTGGCCC
TTTGTAGGAATGATTGTTGAAATTTATGGTTTCGTTCAattgttcaagta
agaaacgTTTTATTTCGTTTTTACTGTAGTACAGTATTGTTCTTTCTACC
CAAAGAACTGCTTTAATAACTTTCGCCCAGTTTTTTAAGGGGACTTATTT
CTTTTACAATATTCTGACATTTCAATTATGTTTTACGTTCTTCTTTTCAG
AGGATTCTTTCCAGTTGTTATAAATTTCCTTCGGCGAGTTCCAGTTCTAG
GGAATCTCCTACTTTTACCAGGAATTAGCACTGTAAGTAACTTTAGCCAA
TGATTTTAGAGAAGAACTTTCGTCCATTTTAAATCAACTCAAAATTAGCA
TTTTGTNTACCAGGAATTAGCACTGTAAGTAACTTTAGCCAATGATTTTA
GAGAAGAACTTTCGTCCATTTTAAATCAACTCAAAATTAGCATTTTGTAT
TGTGTATTTCATTATTATATGATCGCTTCAGCTAACAATGAGAGGTGCTG
ATGATATCAATATATGTTGTTTTTCGCCTTGACCTAGTCTCCGAGTAGAA
TCAAGCAAATGTATCACATCTGTTGATTCATACTAATCTGGAGtttatat
tctttcttttcAGTTTGTCAATTACATTGCGAACGATCCAAATAGCATGG
TATGAGCTCTATATANATATTCTTTCTTTTCAGTTTGTCAATTACATTGC
GAACGATCCAAATAGCATGGTATGAGCTCTATATAAACTCTTTTCTCAAC
TTCTAATCTCATCTTCGTAATAATAacgaccaaaacaaaccaacgaTCAG
ACAATGACGACACAATGACGTTATAGCGACTATGTAACCAACTGCATTGT
TTTGTTTCCGTATTAGAATGCAGAGAAATCTATGCGGTAGGGATGTTTGT
TGTGTTGGTGGATTACTAGATTCGTGATTGGCTCATCGAAAGACCTATGT
AATGAAGTGTAGCTGAAGACTAGAATTGATTTTCCTATATAGATTTTGAA
GCCACTAATTTCCCACCTAAGTTGCGCAGTCCGcctggttttcacacaaa
cgcttggttgaaataaacattttaacaacaaatttaagaaaatatgGACC
ACTAGATgacaaagaaatattttaagcttctctTTCTTTGCCTGGAAAAG
GTTacagattcgcttctagccttCGGTTATGCTTCATACAATTTCATCAt
ttatttataaatttctttttctttgtactCTGATCGACCTGTATTCTAGT
GGTGTTTTTTGCAGGTAGTGCAATAAGGGCAGTAATCAAACTATTAATGC
ATACCTTAGCACCTGTTCTGAGagaaatataaagaaattaCAACTGCTGA
TAAGCTGGACAGTGAGTCATTAAGGGTTTGATATTTTGTCCTTTATTTTC
TATATATTgtgaggtttgtttttgttaaatatGTCACACCTATCACTGAT
ATTGCTCTCTGAAGAAAGATATTTTGTACCAGATTCTGAAAGTTTTGATA
AAAGTGCCAGTCATCCGTTGACTTCGTTCTTTGCAAtgatttgataaaat
atattatttttcattctatTCTCAAATTTATCAAATCTACGTTGAAGTTC
TCCTTGTTTTCCGAGCTGGGATTTTTACCTTttatttagttttgattttt
ttacatattatgTACATAAATTAGGAGAAAACACTGCGAATTATAGTTGA
ATATAAATTTTCTATTTAAAACAAATCTAGAAACGCTgttttctttctat
tttctttttttctgatcCACTCGATTTAATTGGATCAT

Coding sequence (CDS) from alignment at scaffold_71:397350..408087+

>TCONS_00072113 ID=TCONS_00072113|Name=TCONS_00072113|organism=Clytia hemisphaerica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_71:397350..408087+ (Clytia hemisphaerica)
ATGCTGCCAATAACAGACTATCAGAagATTGGAATCGGCGTCACAGGATT
TGGTATGCTATTCCTTTTCCTTGGAATGCTTTTGTTCTTTGATCGTGGTT
TGTTGGCAATAGGAAATatCCTTTTCATATCTGGTTTAGCATTGGTGATT
GGCCTTGAAAGAACATTCAGATTCTTTTTCCAAGTAGAAAAATTGCGCGG
AACAGCCTTCTTCCTTGGTGGAATATGTATTGTGTTGTTAGGGTGGCCCT
TTGTAGGAATGATTGTTGAAATTTATGGTTTCGTTCAattgttcaaAGGA
TTCTTTCCAGTTGTTATAAATTTCCTTCGGCGAGTTCCAGTTCTAGGGAA
TCTCCTACTTTTACCAGGAATTAGCACTTTTGTCAATTACATTGCGAACG
ATCCAAATAGCATGAATGCAGAGAAATCTATGCGGTAGATGCTGCCAATA
ACAGACTATCAGAagATTGGAATCGGCGTCACAGGATTTGGTATGCTATT
CCTTTTCCTTGGAATGCTTTTGTTCTTTGATCGTGGTTTGTTGGCAATAG
GAAATatCCTTTTCATATCTGGTTTAGCATTGGTGATTGGCCTTGAAAGA
ACATTCAGATTCTTTTTCCAAGTAGAAAAATTGCGCGGAACAGCCTTCTT
CCTTGGTGGAATATGTATTGTGTTGTTAGGGTGGCCCTTTGTAGGAATGA
TTGTTGAAATTTATGGTTTCGTTCAattgttcaaAGGATTCTTTCCAGTT
GTTATAAATTTCCTTCGGCGAGTTCCAGTTCTAGGGAATCTCCTACTTTT
ACCAGGAATTAGCACTTTTGTCAATTACATTGCGAACGATCCAAATAGCA
TGAATGCAGAGAAATCTATGCGGTAGATGCTGCCAATAACAGACTATCAG
AagATTGGAATCGGCGTCACAGGATTTGGTATGCTATTCCTTTTCCTTGG
AATGCTTTTGTTCTTTGATCGTGGTTTGTTGGCAATAGGAAATatCCTTT
TCATATCTGGTTTAGCATTGGTGATTGGCCTTGAAAGAACATTCAGATTC
TTTTTCCAAGTAGAAAAATTGCGCGGAACAGCCTTCTTCCTTGGTGGAAT
ATGTATTGTGTTGTTAGGGTGGCCCTTTGTAGGAATGATTGTTGAAATTT
ATGGTTTCGTTCAattgttcaaAGGATTCTTTCCAGTTGTTATAAATTTC
CTTCGGCGAGTTCCAGTTCTAGGGAATCTCCTACTTTTACCAGGAATTAG
CACTTTTGTCAATTACATTGCGAACGATCCAAATAGCATGAATGCAGAGA
AATCTATGCGGTAGATGCTGCCAATAACAGACTATCAGAagATTGGAATC
GGCGTCACAGGATTTGGTATGCTATTCCTTTTCCTTGGAATGCTTTTGTT
CTTTGATCGTGGTTTGTTGGCAATAGGAAATatCCTTTTCATATCTGGTT
TAGCATTGGTGATTGGCCTTGAAAGAACATTCAGATTCTTTTTCCAAGTA
GAAAAATTGCGCGGAACAGCCTTCTTCCTTGGTGGAATATGTATTGTGTT
GTTAGGGTGGCCCTTTGTAGGAATGATTGTTGAAATTTATGGTTTCGTTC
AattgttcaaAGGATTCTTTCCAGTTGTTATAAATTTCCTTCGGCGAGTT
CCAGTTCTAGGGAATCTCCTACTTTTACCAGGAATTAGCACTTTTGTCAA
TTACATTGCGAACGATCCAAATAGCATGAATGCAGAGAAATCTATGCGGT
AGATGCTGCCAATAACAGACTATCAGAagATTGGAATCGGCGTCACAGGA
TTTGGTATGCTATTCCTTTTCCTTGGAATGCTTTTGTTCTTTGATCGTGG
TTTGTTGGCAATAGGAAATatCCTTTTCATATCTGGTTTAGCATTGGTGA
TTGGCCTTGAAAGAACATTCAGATTCTTTTTCCAAGTAGAAAAATTGCGC
GGAACAGCCTTCTTCCTTGGTGGAATATGTATTGTGTTGTTAGGGTGGCC
CTTTGTAGGAATGATTGTTGAAATTTATGGTTTCGTTCAattgttcaaAG
GATTCTTTCCAGTTGTTATAAATTTCCTTCGGCGAGTTCCAGTTCTAGGG
AATCTCCTACTTTTACCAGGAATTAGCACTTTTGTCAATTACATTGCGAA
CGATCCAAATAGCATGAATGCAGAGAAATCTATGCGGTAGATGCTGCCAA
TAACAGACTATCAGAagATTGGAATCGGCGTCACAGGATTTGGTATGCTA
TTCCTTTTCCTTGGAATGCTTTTGTTCTTTGATCGTGGTTTGTTGGCAAT
AGGAAATatCCTTTTCATATCTGGTTTAGCATTGGTGATTGGCCTTGAAA
GAACATTCAGATTCTTTTTCCAAGTAGAAAAATTGCGCGGAACAGCCTTC
TTCCTTGGTGGAATATGTATTGTGTTGTTAGGGTGGCCCTTTGTAGGAAT
GATTGTTGAAATTTATGGTTTCGTTCAattgttcaaAGGATTCTTTCCAG
TTGTTATAAATTTCCTTCGGCGAGTTCCAGTTCTAGGGAATCTCCTACTT
TTACCAGGAATTAGCACTTTTGTCAATTACATTGCGAACGATCCAAATAG
CATGAATGCAGAGAAATCTATGCGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044789XLOC_044789Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072113-proteinTCONS_00072113-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072113-exon-scaffold_71-1491911889:397350..397406TCONS_00072113-exon-scaffold_71-1491911889:397350..397406Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1510915933:397350..397406TCONS_00072113-exon-scaffold_71-1510915933:397350..397406Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1575043694:397350..397406TCONS_00072113-exon-scaffold_71-1575043694:397350..397406Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1491911889:397471..397590TCONS_00072113-exon-scaffold_71-1491911889:397471..397590Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1510915933:397471..397590TCONS_00072113-exon-scaffold_71-1510915933:397471..397590Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1575043694:397471..397590TCONS_00072113-exon-scaffold_71-1575043694:397471..397590Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1491911889:405597..405688TCONS_00072113-exon-scaffold_71-1491911889:405597..405688Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1510915933:405597..405688TCONS_00072113-exon-scaffold_71-1510915933:405597..405688Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1575043694:405597..405688TCONS_00072113-exon-scaffold_71-1575043694:405597..405688Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1491911889:406168..406346TCONS_00072113-exon-scaffold_71-1491911889:406168..406346Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1510915933:406168..406346TCONS_00072113-exon-scaffold_71-1510915933:406168..406346Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1575043694:406168..406346TCONS_00072113-exon-scaffold_71-1575043694:406168..406346Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1491911889:406500..406581TCONS_00072113-exon-scaffold_71-1491911889:406500..406581Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1510915933:406500..406581TCONS_00072113-exon-scaffold_71-1510915933:406500..406581Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1575043694:406500..406581TCONS_00072113-exon-scaffold_71-1575043694:406500..406581Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1491911889:406913..406948TCONS_00072113-exon-scaffold_71-1491911889:406913..406948Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1510915933:406913..406948TCONS_00072113-exon-scaffold_71-1510915933:406913..406948Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1575043694:406913..406948TCONS_00072113-exon-scaffold_71-1575043694:406913..406948Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1491911889:407166..408087TCONS_00072113-exon-scaffold_71-1491911889:407166..408087Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1510915933:407166..408087TCONS_00072113-exon-scaffold_71-1510915933:407166..408087Clytia hemisphaericaexon
TCONS_00072113-exon-scaffold_71-1575043694:407166..408087TCONS_00072113-exon-scaffold_71-1575043694:407166..408087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:397350..408087 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15217	1.53345	0.251424	0.559064	3.19828	3.41245	9.27601	7.52483	2.33989	2.14754	1.76957	1.97012	1.38344	0.349197	2.53039	3.13484	3.16201	2.72707	0.771678	0.663863	2.45007	1.99054	1.18701	1.1366	1.28701	1.28626	0.896104	0.384077	1.26599	1.44146
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007305Vesicle_transpt_Got1/SFT2
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
Blast
[Close]
BLAST of TCONS_00072113 vs. Swiss-Prot (Human)
Match: GOT1A (Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.550e-27
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = 3 
Query:  153 MLPITDYQKIGIGVTXXXXXXXXXXXXXXXXXXXXAIGNILFISGLALVIGLERTFRFFFQVEKLRGTAFFLGGICIVLLGWPFVGMIVEIYGFVQLFKGFFPVVINF 476
            M+ IT++QKIG+G+TGFG+ F+  G LL+FD  LLA GN+LF++GL+L+IGL +TF FFFQ  KL+GT+F LGG+ IVLL WP +GM +E YGF  LFKGFFPV   F
Sbjct:    1 MISITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGF 108
The following BLAST results are available for this feature:
BLAST of TCONS_00072113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GOT1A3.550e-2761.11Vesicle transport protein GOT1A OS=Homo sapiens GN... [more]
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