TCONS_00072113-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072113-protein
Unique NameTCONS_00072113-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length145

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072113-protein ID=TCONS_00072113-protein|Name=TCONS_00072113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MLPITDYQKIGIGVTGFGMLFLFLGMLLFFDRGLLAIGNILFISGLALVI
GLERTFRFFFQVEKLRGTAFFLGGICIVLLGWPFVGMIVEIYGFVQLFKG
FFPVVINFLRRVPVLGNLLLLPGISTFVNYIANDPNSMNAEKSMR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044789XLOC_044789Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072113TCONS_00072113Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007305Vesicle_transpt_Got1/SFT2
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007305Vesicle transport protein, Got1/SFT2-likePFAMPF04178Got1coord: 18..113
e-value: 1.4E-17
score: 64.1

Blast
[Close]
BLAST of TCONS_00072113-protein vs. Swiss-Prot (Human)
Match: GOT1B (Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.666e-48
Identity = 90/136 (66.18%), Postives = 113/136 (83.09%), Query Frame = 0 
Query:    1 MLPITDYQKIGIGVTGFGMLFLFLGMLLFFDRGLLAIGNILFISGLALVIGLERTFRFFFQVEKLRGTAFFLGGICIVLLGWPFVGMIVEIYGFVQLFKGFFPVVINFLRRVPVLGNLLLLPGISTFVNYIANDPN 136
            M+ +TD QKIG+G+TGFG+ FLF GM+LFFD+ LLAIGN+LF++GLA VIGLERTFRFFFQ  K++ T FFLGG+ +VL+GWP +GMI EIYGF  LF+GFFPVV+ F+RRVPVLG+LL LPGI +FV+ +    N
Sbjct:    1 MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDKVGESNN 136
The following BLAST results are available for this feature:
BLAST of TCONS_00072113-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GOT1B6.666e-4866.18Vesicle transport protein GOT1B OS=Homo sapiens GN... [more]
back to top