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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072104 ID=TCONS_00072104|Name=TCONS_00072104|organism=Clytia hemisphaerica|type=transcript|length=801bp
ACAAAAATGAAGTTAATCATCGCTTGTGCCTTGGTTGCTGTTGCCGCAGC
TATTACCAACCCACCAATCACTGGAACCACACCACCAGCTATTCCATGCC
CAAACTCATTATGCCAAGGAAAATATGACGGAAACTTTGCCCTCAAATCA
CACAGAAACTATTTCCTCCAATGTGTCGGTGGAAACGCTTATTGTCAAGC
CTGCTTCCCACTTTCTTTGGAATTCAGTCAAAGATGTAACCAATGTTTGT
ACAACCGCAAAGACGAATGTGTCACCACACAAAAATGGGAGCCAGCCACC
ACCTTTGCTTGCCCAGACAAATGCCCAGCCCGTGGACCAGATTTCACTGG
CAACATTAAAGATGACCATGAACCACGACAATACGTTGCTTGCTGGAAGG
GAGTTACTGTTGGATGTATCGCCTGCCCAGGAAACTTGAAATTCAACGAG
AAAGAAAATGCTTGCTTGTACGAAGGCAAATACCTTACCGCACCATACTA
AACACAATCGAACGAAGTCGTAAAACGAAAATCTCAAAACAGAAAACTCT
GTTTTTACATCTTCACTTCACTTTCATTCTTTAGAATCCAACCTTTCTTG
CAAGCCTCTATCTTGTTGTTCACTTTCCTGTCTAACCCTGTAACTGAAAA
TCTTACTCTTCTATGAATTTCCTTCCTTctctatttttgaaattttctat
aatTCTATAATATGATAATTTATCTTATTGTAATATTTAtctaaatgttt
caaaaatattttttcatctgAAAGAAACTACACCTAAAAATTATAAAACC
G Run BLAST on NCBI protein sequence of TCONS_00072104-protein >TCONS_00072104-protein ID=TCONS_00072104-protein|Name=TCONS_00072104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
TKMKLIIACALVAVAAAITNPPITGTTPPAIPCPNSLCQGKYDGNFALKS
HRNYFLQCVGGNAYCQACFPLSLEFSQRCNQCLYNRKDECVTTQKWEPAT
TFACPDKCPARGPDFTGNIKDDHEPRQYVACWKGVTVGCIACPGNLKFNE
KENACLYEGKYLTAPY Run BLAST on NCBI transcript from alignment at scaffold_71:143309..144342+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072104 ID=TCONS_00072104|Name=TCONS_00072104|organism=Clytia hemisphaerica|type=transcript|length=1034bp|location=Sequence derived from alignment at scaffold_71:143309..144342+ (Clytia hemisphaerica)
ACAAAAATGAAGTTAATCATCGCTTGTGCCTTGGTTGCTGGTAAGGCTTT
CattgtcatttttattttttggaatatttttcgtCTGATCAACTTAATTT
TTGGTCGAACCGAATTATTGAATATCTAAAGTTTGATTTCTTAGGCCAAA
ATTCTAATTCAAATTACTCAATATGTTTTAATCTATTTCCTTGTAAATTG
GCTATTGGAAAAACCTTCGTATATACAAGAGTAGACTTTATGAATAATCC
ctgtttttgtatcttttttgcAGTTGCCGCAGCTATTACCAACCCACCAA
TCACTGGAACCACACCACCAGCTATTCCATGCCCAAACTCATTATGCCAA
GGAAAATATGACGGAAACTTTGCCCTCAAATCACACAGAAACTATTTCCT
CCAATGTGTCGGTGGAAACGCTTATTGTCAAGCCTGCTTCCCACTTTCTT
TGGAATTCAGTCAAAGATGTAACCAATGTTTGTACAACCGCAAAGACGAA
TGTGTCACCACACAAAAATGGGAGCCAGCCACCACCTTTGCTTGCCCAGA
CAAATGCCCAGCCCGTGGACCAGATTTCACTGGCAACATTAAAGATGACC
ATGAACCACGACAATACGTTGCTTGCTGGAAGGGAGTTACTGTTGGATGT
ATCGCCTGCCCAGGAAACTTGAAATTCAACGAGAAAGAAAATGCTTGCTT
GTACGAAGGCAAATACCTTACCGCACCATACTAAACACAATCGAACGAAG
TCGTAAAACGAAAATCTCAAAACAGAAAACTCTGTTTTTACATCTTCACT
TCACTTTCATTCTTTAGAATCCAACCTTTCTTGCAAGCCTCTATCTTGTT
GTTCACTTTCCTGTCTAACCCTGTAACTGAAAATCTTACTCTTCTATGAA
TTTCCTTCCTTctctatttttgaaattttctataatTCTATAATATGATA
ATTTATCTTATTGTAATATTTAtctaaatgtttcaaaaatattttttcat
ctgAAAGAAACTACACCTAAAAATTATAAAACCG Coding sequence (CDS) from alignment at scaffold_71:143309..144342+ >TCONS_00072104 ID=TCONS_00072104|Name=TCONS_00072104|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_71:143309..144342+ (Clytia hemisphaerica)
ACAAAAATGAAGTTAATCATCGCTTGTGCCTTGGTTGCTGTTGCCGCAGC
TATTACCAACCCACCAATCACTGGAACCACACCACCAGCTATTCCATGCC
CAAACTCATTATGCCAAGGAAAATATGACGGAAACTTTGCCCTCAAATCA
CACAGAAACTATTTCCTCCAATGTGTCGGTGGAAACGCTTATTGTCAAGC
CTGCTTCCCACTTTCTTTGGAATTCAGTCAAAGATGTAACCAATGTTTGT
ACAACCGCAAAGACGAATGTGTCACCACACAAAAATGGGAGCCAGCCACC
ACCTTTGCTTGCCCAGACAAATGCCCAGCCCGTGGACCAGATTTCACTGG
CAACATTAAAGATGACCATGAACCACGACAATACGTTGCTTGCTGGAAGG
GAGTTACTGTTGGATGTATCGCCTGCCCAGGAAACTTGAAATTCAACGAG
AAAGAAAATGCTTGCTTGTACGAAGGCAAATACCTTACCGCACCATACTA
AACAAAAATGAAGTTAATCATCGCTTGTGCCTTGGTTGCTGTTGCCGCAG
CTATTACCAACCCACCAATCACTGGAACCACACCACCAGCTATTCCATGC
CCAAACTCATTATGCCAAGGAAAATATGACGGAAACTTTGCCCTCAAATC
ACACAGAAACTATTTCCTCCAATGTGTCGGTGGAAACGCTTATTGTCAAG
CCTGCTTCCCACTTTCTTTGGAATTCAGTCAAAGATGTAACCAATGTTTG
TACAACCGCAAAGACGAATGTGTCACCACACAAAAATGGGAGCCAGCCAC
CACCTTTGCTTGCCCAGACAAATGCCCAGCCCGTGGACCAGATTTCACTG
GCAACATTAAAGATGACCATGAACCACGACAATACGTTGCTTGCTGGAAG
GGAGTTACTGTTGGATGTATCGCCTGCCCAGGAAACTTGAAATTCAACGA
GAAAGAAAATGCTTGCTTGTACGAAGGCAAATACCTTACCGCACCATACT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072104-exon-scaffold_71-1491911889:143309..143348 | TCONS_00072104-exon-scaffold_71-1491911889:143309..143348 | Clytia hemisphaerica | exon |
| TCONS_00072104-exon-scaffold_71-1510915933:143309..143348 | TCONS_00072104-exon-scaffold_71-1510915933:143309..143348 | Clytia hemisphaerica | exon |
| TCONS_00072104-exon-scaffold_71-1575043694:143309..143348 | TCONS_00072104-exon-scaffold_71-1575043694:143309..143348 | Clytia hemisphaerica | exon |
| TCONS_00072104-exon-scaffold_71-1491911889:143582..144342 | TCONS_00072104-exon-scaffold_71-1491911889:143582..144342 | Clytia hemisphaerica | exon |
| TCONS_00072104-exon-scaffold_71-1510915933:143582..144342 | TCONS_00072104-exon-scaffold_71-1510915933:143582..144342 | Clytia hemisphaerica | exon |
| TCONS_00072104-exon-scaffold_71-1575043694:143582..144342 | TCONS_00072104-exon-scaffold_71-1575043694:143582..144342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:143309..144342 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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