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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072017 ID=TCONS_00072017|Name=TCONS_00072017|organism=Clytia hemisphaerica|type=transcript|length=1865bp
ATTCGGTCAAGAAAACAAATATGGCGGTCGAAATTAGCAGTACGACAGTT
GGAAAAGGAGCAAATAAACATTGTTGCTGGGGAATTTGCAAACATGATTC
AAGATATCCTGATAAATTACCACCAGGGACATTTTTTATATCATTTCCAA
AAGTTGGTAAATTGAAAGATTCACAAACAGAGTGGCAAAAGAGTAAAGAA
AGGGAAAAAACAGAGAAAGCTAAGAGATGGATTCATGCTTGTGGAAGGAA
GGGTTtcaccatttcaaacatcactAAAAGCACATACATTTGCTCTAAAC
ATTTCATTGGTGGAAATGGTCCAACCGAGGAAAATCCAGATCCAATAAAA
GCAACACTATCAGAAGCTGAAGTGGAAAAGAAGTTAAGTGGTAAGAGGAA
GGCACCAAAACAACGAGAACCTCTCCCTTCGAAGCCAGTGGCAgtgaaaa
ggaagaaaaaatcaaatatcgAAGTAACATTCGAATGCAATACTGCCAAT
GAACCTCTTGATAGCACTGAAGCTGGTCCAAGTACATCATCTaatcaaaa
tgaagaaaatcaaaaacaaactcTTATTAGTGTTGATACCTATTCTACTG
ATGTTGTCAACCCTCCTGATACTGTCGACAAATCCACTCAAACTGAGGCT
GACAAACTAGCCAAATCCACCCAAACTGAGGCTGACAAACTAGCCATTTC
AGGAAGAATTGAAATTGTCACGTTAAAAAATGAGATTGCTGTGTTAAAGA
GTAGAATTGAATCATCAAACGATCACAGTGAGTGTAACCCAATGAGCATG
AATGTCATACTGAAATCAGAAGAAAAGACAAAGTATTTTATTGGACTTTC
TCGAAAGCATTTTTGGAGCCTTTATAACTTTCTTGGTGATGCCAAATTCA
ATCTCACATACTGGAACAGTTCATATTCTCGAAACTCTTCAACAAGAAAA
TTCTCGATCCCAATTCCTAACCAACTATTCATAACTCTTTTACGACTGCG
ACGAGGGTTTAACCTTTACACAATGGCACACTTTTACAGTGTTAGCGAAA
CCACAATCAGTACAATTTTCAACACATGGATTATGTTTTTGTTTCATCAT
TTCAAAAGTTTGGGCAATGATATTCTGTTTCCTGAGAGACAAGTATTCAA
AAAGACACTGCCGAAAGTTTTTCGCCCATTCAAGAATGTAAGGGCAAGCA
TAGACTGTACTGAGTTGAAATGTGAAGCACCTCGTGATTACAAGAGACAA
GGAAATATGTATTCAAACTACAAAAGTCACTGCACATTTAAATGTTTGAT
TGCAGTCAATCCTAATGGGGCAGCATGTTTTGTATCTGACTTGTTTGAGG
GGAGCATTAATGATGTGGACATTTTTCAAAAATGTGGTATACTGCAGCAA
GTCAATTTCCAGGATTCTTTTTTAGTAGATAAAGGCTTCACTGTGCAACA
TTTGCTGCTACCCAAACAAGCATCAATTTTCATCCCTCCCTTCTTGGGGA
AACGTGAAAGATTTACAAAGGAGGAAGTATTGTTATGCAAAAGGATTGCA
AAAGCTCGAATCCATGTGGAAAGATTTAACGAACGATTAAAGAGATTTCG
ACTCTTGGATGGAATAATTCAATTATCTCTTACACCTATTGCTTCACAGT
TAGTTTTTGTGGGGTCAATGCTGGTCAATTTTCAGCATTTCCTATGTAAA
TGATTATTTTACTAACCTATTTTTACTGTATTGTGTTATCTACTATCAGA
ATATGAAATAttgatcaaaaattgaaaaatNGGTTTTTGTGGGGTCAATG
CTGGTCAATTTTCAGCATTTCCTATGTAAATGATTATTTTACTAACCTAT
TTTTACTGTATTGTG Run BLAST on NCBI protein sequence of TCONS_00072017-protein >TCONS_00072017-protein ID=TCONS_00072017-protein|Name=TCONS_00072017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
SVKKTNMAVEISSTTVGKGANKHCCWGICKHDSRYPDKLPPGTFFISFPK
VGKLKDSQTEWQKSKEREKTEKAKRWIHACGRKGFTISNITKSTYICSKH
FIGGNGPTEENPDPIKATLSEAEVEKKLSGKRKAPKQREPLPSKPVAVKR
KKKSNIEVTFECNTANEPLDSTEAGPSTSSNQNEENQKQTLISVDTYSTD
VVNPPDTVDKSTQTEADKLAKSTQTEADKLAISGRIEIVTLKNEIAVLKS
RIESSNDHSECNPMSMNVILKSEEKTKYFIGLSRKHFWSLYNFLGDAKFN
LTYWNSSYSRNSSTRKFSIPIPNQLFITLLRLRRGFNLYTMAHFYSVSET
TISTIFNTWIMFLFHHFKSLGNDILFPERQVFKKTLPKVFRPFKNVRASI
DCTELKCEAPRDYKRQGNMYSNYKSHCTFKCLIAVNPNGAACFVSDLFEG
SINDVDIFQKCGILQQVNFQDSFLVDKGFTVQHLLLPKQASIFIPPFLGK
RERFTKEEVLLCKRIAKARIHVERFNERLKRFRLLDGIIQLSLTPIASQL
VFVGSMLVNFQHFLCK Run BLAST on NCBI transcript from alignment at scaffold_68:5309..7173 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072017 ID=TCONS_00072017|Name=TCONS_00072017|organism=Clytia hemisphaerica|type=transcript|length=1865bp|location=Sequence derived from alignment at scaffold_68:5309..7173 (Clytia hemisphaerica)
CACAATACAGTAAAAATAGGTTAGTAAAATAATCATTTACATAGGAAATG
CTGAAAATTGACCAGCATTGACCCCACAAAAACCNatttttcaatttttg
atcaaTATTTCATATTCTGATAGTAGATAACACAATACAGTAAAAATAGG
TTAGTAAAATAATCATTTACATAGGAAATGCTGAAAATTGACCAGCATTG
ACCCCACAAAAACTAACTGTGAAGCAATAGGTGTAAGAGATAATTGAATT
ATTCCATCCAAGAGTCGAAATCTCTTTAATCGTTCGTTAAATCTTTCCAC
ATGGATTCGAGCTTTTGCAATCCTTTTGCATAACAATACTTCCTCCTTTG
TAAATCTTTCACGTTTCCCCAAGAAGGGAGGGATGAAAATTGATGCTTGT
TTGGGTAGCAGCAAATGTTGCACAGTGAAGCCTTTATCTACTAAAAAAGA
ATCCTGGAAATTGACTTGCTGCAGTATACCACATTTTTGAAAAATGTCCA
CATCATTAATGCTCCCCTCAAACAAGTCAGATACAAAACATGCTGCCCCA
TTAGGATTGACTGCAATCAAACATTTAAATGTGCAGTGACTTTTGTAGTT
TGAATACATATTTCCTTGTCTCTTGTAATCACGAGGTGCTTCACATTTCA
ACTCAGTACAGTCTATGCTTGCCCTTACATTCTTGAATGGGCGAAAAACT
TTCGGCAGTGTCTTTTTGAATACTTGTCTCTCAGGAAACAGAATATCATT
GCCCAAACTTTTGAAATGATGAAACAAAAACATAATCCATGTGTTGAAAA
TTGTACTGATTGTGGTTTCGCTAACACTGTAAAAGTGTGCCATTGTGTAA
AGGTTAAACCCTCGTCGCAGTCGTAAAAGAGTTATGAATAGTTGGTTAGG
AATTGGGATCGAGAATTTTCTTGTTGAAGAGTTTCGAGAATATGAACTGT
TCCAGTATGTGAGATTGAATTTGGCATCACCAAGAAAGTTATAAAGGCTC
CAAAAATGCTTTCGAGAAAGTCCAATAAAATACTTTGTCTTTTCTTCTGA
TTTCAGTATGACATTCATGCTCATTGGGTTACACTCACTGTGATCGTTTG
ATGATTCAATTCTACTCTTTAACACAGCAATCTCATTTTTTAACGTGACA
ATTTCAATTCTTCCTGAAATGGCTAGTTTGTCAGCCTCAGTTTGGGTGGA
TTTGGCTAGTTTGTCAGCCTCAGTTTGAGTGGATTTGTCGACAGTATCAG
GAGGGTTGACAACATCAGTAGAATAGGTATCAACACTAATAAgagtttgt
ttttgattttcttcattttgattAGATGATGTACTTGGACCAGCTTCAGT
GCTATCAAGAGGTTCATTGGCAGTATTGCATTCGAATGTTACTTcgatat
ttgattttttcttccttttcacTGCCACTGGCTTCGAAGGGAGAGGTTCT
CGTTGTTTTGGTGCCTTCCTCTTACCACTTAACTTCTTTTCCACTTCAGC
TTCTGATAGTGTTGCTTTTATTGGATCTGGATTTTCCTCGGTTGGACCAT
TTCCACCAATGAAATGTTTAGAGCAAATGTATGTGCTTTTagtgatgttt
gaaatggtgaAACCCTTCCTTCCACAAGCATGAATCCATCTCTTAGCTTT
CTCTGTTTTTTCCCTTTCTTTACTCTTTTGCCACTCTGTTTGTGAATCTT
TCAATTTACCAACTTTTGGAAATGATATAAAAAATGTCCCTGGTGGTAAT
TTATCAGGATATCTTGAATCATGTTTGCAAATTCCCCAGCAACAATGTTT
ATTTGCTCCTTTTCCAACTGTCGTACTGCTAATTTCGACCGCCATATTTG
TTTTCTTGACCGAAT Coding sequence (CDS) from alignment at scaffold_68:5309..7173 >TCONS_00072017 ID=TCONS_00072017|Name=TCONS_00072017|organism=Clytia hemisphaerica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_68:5309..7173 (Clytia hemisphaerica)
TCATTTACATAGGAAATGCTGAAAATTGACCAGCATTGACCCCACAAAAA
CTAACTGTGAAGCAATAGGTGTAAGAGATAATTGAATTATTCCATCCAAG
AGTCGAAATCTCTTTAATCGTTCGTTAAATCTTTCCACATGGATTCGAGC
TTTTGCAATCCTTTTGCATAACAATACTTCCTCCTTTGTAAATCTTTCAC
GTTTCCCCAAGAAGGGAGGGATGAAAATTGATGCTTGTTTGGGTAGCAGC
AAATGTTGCACAGTGAAGCCTTTATCTACTAAAAAAGAATCCTGGAAATT
GACTTGCTGCAGTATACCACATTTTTGAAAAATGTCCACATCATTAATGC
TCCCCTCAAACAAGTCAGATACAAAACATGCTGCCCCATTAGGATTGACT
GCAATCAAACATTTAAATGTGCAGTGACTTTTGTAGTTTGAATACATATT
TCCTTGTCTCTTGTAATCACGAGGTGCTTCACATTTCAACTCAGTACAGT
CTATGCTTGCCCTTACATTCTTGAATGGGCGAAAAACTTTCGGCAGTGTC
TTTTTGAATACTTGTCTCTCAGGAAACAGAATATCATTGCCCAAACTTTT
GAAATGATGAAACAAAAACATAATCCATGTGTTGAAAATTGTACTGATTG
TGGTTTCGCTAACACTGTAAAAGTGTGCCATTGTGTAAAGGTTAAACCCT
CGTCGCAGTCGTAAAAGAGTTATGAATAGTTGGTTAGGAATTGGGATCGA
GAATTTTCTTGTTGAAGAGTTTCGAGAATATGAACTGTTCCAGTATGTGA
GATTGAATTTGGCATCACCAAGAAAGTTATAAAGGCTCCAAAAATGCTTT
CGAGAAAGTCCAATAAAATACTTTGTCTTTTCTTCTGATTTCAGTATGAC
ATTCATGCTCATTGGGTTACACTCACTGTGATCGTTTGATGATTCAATTC
TACTCTTTAACACAGCAATCTCATTTTTTAACGTGACAATTTCAATTCTT
CCTGAAATGGCTAGTTTGTCAGCCTCAGTTTGGGTGGATTTGGCTAGTTT
GTCAGCCTCAGTTTGAGTGGATTTGTCGACAGTATCAGGAGGGTTGACAA
CATCAGTAGAATAGGTATCAACACTAATAAgagtttgtttttgattttct
tcattttgattAGATGATGTACTTGGACCAGCTTCAGTGCTATCAAGAGG
TTCATTGGCAGTATTGCATTCGAATGTTACTTcgatatttgattttttct
tccttttcacTGCCACTGGCTTCGAAGGGAGAGGTTCTCGTTGTTTTGGT
GCCTTCCTCTTACCACTTAACTTCTTTTCCACTTCAGCTTCTGATAGTGT
TGCTTTTATTGGATCTGGATTTTCCTCGGTTGGACCATTTCCACCAATGA
AATGTTTAGAGCAAATGTATGTGCTTTTagtgatgtttgaaatggtgaAA
CCCTTCCTTCCACAAGCATGAATCCATCTCTTAGCTTTCTCTGTTTTTTC
CCTTTCTTTACTCTTTTGCCACTCTGTTTGTGAATCTTTCAATTTACCAA
CTTTTGGAAATGATATAAAAAATGTCCCTGGTGGTAATTTATCAGGATAT
CTTGAATCATGTTTGCAAATTCCCCAGCAACAATGTTTATTTGCTCCTTT
TCCAACTGTCGTACTGCTAATTTCGACCGCCATATTTGTTTTCTTGACCG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072017-exon-scaffold_68-1491911889:5309..7173 | TCONS_00072017-exon-scaffold_68-1491911889:5309..7173 | Clytia hemisphaerica | exon |
| TCONS_00072017-exon-scaffold_68-1510915933:5309..7173 | TCONS_00072017-exon-scaffold_68-1510915933:5309..7173 | Clytia hemisphaerica | exon |
| TCONS_00072017-exon-scaffold_68-1575043694:5309..7173 | TCONS_00072017-exon-scaffold_68-1575043694:5309..7173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_68 | supercontig | scaffold_68:5309..7173 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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