TCONS_00071879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071879
Unique NameTCONS_00071879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071879 ID=TCONS_00071879|Name=TCONS_00071879|organism=Clytia hemisphaerica|type=transcript|length=1503bp
GGCGAAAACAATTCattgagaaatttaaatttaatgaaatagaattgatt
actctcgggtacctaataaacggggggtcggAATAAGTGGAATGGGtgga
aaaattcttaaaaattaataagcggtgGGGTTggaatgaataaaaatgtt
ctggGTGGAATATTTTTAAAAGGGAGCCAATACAGCAGagttagggcaaa
agagggaactttcaaaaacatttccccaaacattaataagcagggggtgg
tTGGAATAATAATCCTGGGTGAGAAATTTTCGAAGAATTAATTAGCAGGG
GGTTATCTTCTTATCCGAGAGTAAATATGTTTCGACTAATAATAAGATAA
TTACAAATTTAAAGATCATAAACTTGTTCTTTCGTTATCTGGCCATAGAA
CCGTGAATTAAAGATTGTTCGTAAACAGCTGATAAACATTGGCACAAGAA
ACAATCCATCATTTGTAGTAAAAGATGGCACCCAATAAGCAACCGAATAG
CACAAGTGGTATGGaagaacgaaaaataaaaagacCCCCAATAGACGTAA
TACCATACCCAAGTTTTTACCAACATCTATAGATTTATGGAGATTCCATG
CTTTTGGTATGCTGTTTTCAAGCGATCCTTTATCAAGCATATAATTTGCT
TCAAGACATTTCATTGATTGCTTTTCTAGCTTAACCTCCACATTCAAGTT
GCCCAAGGCATCTTTTTCAATGGCTCTCGTCTTCATACAGAATAAACGTA
ATGTCATTAGCCCGGTTAGAACAAACAAGTCTAAATAAGGGAGAGATAGG
GCAAATGTGATGAGAATATCACTGTAAAACTGACTCGAAGTCAAAGACAG
TTTTAGCGCTTTAGTTATTGTTTTGTTGTCCAGTAAAACGATCAATAATG
ATAAGATGGTAATGACAGCGAAACGGATGATTGTACCAGCATTGCCAGTA
AGGTGATCCAGAGCTATTGTGACCAATAGAATTGATGAAAACCAATGAAT
TGCCAACGCACAATGAATTTCAACGAAGATCCTCTTGCCGTAGTAGAAAT
ATTGTTGTGCCGCATGCAGATAAACAATGATTGATAAGAAATCCAGGACA
GCAAGTATACAATGGCGCATATCCTTTTTCGGTGAATTGAAACAAACACG
ATACAATGTTTGAATATTACATACCAATATTGCCAAGGAAATTAATGGTG
TTTGATACATGGTTTCGTACAATATTGGCTCAAGATAATCCATACTATCA
TAAAGTGATTTTCAAGATTGCCAATATAACTATCTAATTTATTTAATATC
TGTAAATCTTAAAGGGAATGAAAATATTAGGGTTTTTCAGCTCCGATAAC
AATACAAAAGTAATGCATCCGAAAACTAAAAGCATAGTAGCATCTAGAAC
TTGATCAAAAGTTTCCGTGGCACTATAAACattcagataaaaaaaacttg
acCAAAACATTCTGAGGCACTATAACATTCAGATAAAAAAACTTGAACGA
AAC
Run BLAST on NCBI

transcript from alignment at scaffold_64:113386..114940-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071879 ID=TCONS_00071879|Name=TCONS_00071879|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at scaffold_64:113386..114940- (Clytia hemisphaerica)
GGCGAAAACAATTCATTGAGAAATTTAAATTTAATGAAATAGAATTGATT ACTCTCGGGTACCTAATAAACGGGGGGTCGGAATAAGTGGAATGGGTGGA AAAATTCTTAAAAATTAATAAGCGGTGGGGTTGGAATGAATAAAAATGTT CTGGGTGGAATATTTTTAAAAGGGAGCCAATACAGCAGAGTTAGGGCAAA AGAGGGAACTTTCAAAAACATTTCCCCAAACATTAATAAGCAGGGGGTGG TTGGAATAATAATCCTGGGTGAGAAATTTTCGAAGAATTAATTAGCAGGG GGTTATCTTCTTATCCGAGAGTAAATATGTTTCGACTAATAATAAGATAA TTACAAATTTAAAGATCATAAACTTGTTCTTTCGTTATCTGGCCATAGAA CCGTGAATTAAAGATTGTTCGTAAACAGCTGATAAACATTGGCACAAGAA ACAATCCATCATTTGTAGTAAAAGATGGCACCCAATAAGCAACCGAATAG CACAAGTGGTATGGAAGAACGAAAAATAAAAAGACCCCCAATAGACGTAA TACCATACCCAAGTTTTTACCAACATCTATAGATTTATGGAGATTCCATG CTTTTGGTATGCTGTTTTCAAGCGATCCTTTATCAAGCATATAATTTGCT TCAAGACATTTCATTGATTGCTTTTCTAGCTTAACCTCCACATTCAAGTT GCCCAAGGCATCTTTTTCAATGGCTCTCGTCTTCATACAGAATAAACGTA ATGTCATTAGCCCGGTTAGAACAAACAAGTCTAAATAAGGGAGAGATAGG GCAAATGTGATGAGAATATCACTGTAAAACTGACTCGAAGTCAAAGACAG TTTTAGCGCTTTAGTTATTGTTTTGTTGTCCAGTAAAACGATCAATAATG ATAAGATGGTAATGACAGCGAAACGGATGATTGTACCAGCATTGCCAGTA AGGTGATCCAGAGCTATTGTGACCAATAGAATTGATGAAAACCAATGAAT TGCCAACGCACAATGAATTTCAACGAAGATCCTCTTGCCGTAGTAGAAAT ATTGTTGTGCCGCATGCAGATAAACAATGATTGATAAGAAATCCAGGACA GCAAGTATACAATGGCGCATATCCTTTTTCGGTGAATTGAAACAAACACG ATACAATGTTTGAATATTACATACCAATATTGCCAAGGAAATTAATGGTG TTTGATACATGGTTTCGTACAATATTGGTTCAAGATAATCCATACTNTGG TGTTTGATACATGGTTTCGTACAATATTGGCTCAAGATAATCCATACTAT CATAAAGTGATTTTCAAGATTGCCAATATAACTATCTAATTTATTTAATA TCTGTAAATCTTAAAGGGAATGAAAATATTAGGGTTTTTCAGCTCCGATA ACAATACAAAAGTAATGCATCCGAAAACTAAAAGCATAGTAGCATCTAGA ACTTGATCAAAAGTTTCCGTGGCACTATAAACATTCAGATAAAAAAAACT TGACCAAAACATTCTGAGGCACTATAACATTCAGATAAAAAAACTTGAAC GAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044619XLOC_044619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071879-exon-scaffold_64-1575043694:113733..114940TCONS_00071879-exon-scaffold_64-1575043694:113733..114940Clytia hemisphaericaexon
TCONS_00071879-exon-scaffold_64-1575043694:113386..113680TCONS_00071879-exon-scaffold_64-1575043694:113386..113680Clytia hemisphaericaexon
TCONS_00071879-exon-scaffold_64-1510915933:113733..114940TCONS_00071879-exon-scaffold_64-1510915933:113733..114940Clytia hemisphaericaexon
TCONS_00071879-exon-scaffold_64-1510915933:113386..113680TCONS_00071879-exon-scaffold_64-1510915933:113386..113680Clytia hemisphaericaexon
TCONS_00071879-exon-scaffold_64-1491911889:113733..114940TCONS_00071879-exon-scaffold_64-1491911889:113733..114940Clytia hemisphaericaexon
TCONS_00071879-exon-scaffold_64-1491911889:113386..113680TCONS_00071879-exon-scaffold_64-1491911889:113386..113680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:113386..114940 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301588 0.240624 0.248344 0.0911124 19.7808 13.3522 19.8452 20.4268 7.30082 7.46927 4.61102 2.72069 5.28794 4.92348 2.92685 4.10998 3.02554 3.05889 3.52654 2.37885 7.66093 4.92628 3.20646 4.68709 3.26746 5.12292 1.42858 0.361095 0.0912926 0.124017
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top