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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071879 ID=TCONS_00071879|Name=TCONS_00071879|organism=Clytia hemisphaerica|type=transcript|length=1503bp
GGCGAAAACAATTCattgagaaatttaaatttaatgaaatagaattgatt
actctcgggtacctaataaacggggggtcggAATAAGTGGAATGGGtgga
aaaattcttaaaaattaataagcggtgGGGTTggaatgaataaaaatgtt
ctggGTGGAATATTTTTAAAAGGGAGCCAATACAGCAGagttagggcaaa
agagggaactttcaaaaacatttccccaaacattaataagcagggggtgg
tTGGAATAATAATCCTGGGTGAGAAATTTTCGAAGAATTAATTAGCAGGG
GGTTATCTTCTTATCCGAGAGTAAATATGTTTCGACTAATAATAAGATAA
TTACAAATTTAAAGATCATAAACTTGTTCTTTCGTTATCTGGCCATAGAA
CCGTGAATTAAAGATTGTTCGTAAACAGCTGATAAACATTGGCACAAGAA
ACAATCCATCATTTGTAGTAAAAGATGGCACCCAATAAGCAACCGAATAG
CACAAGTGGTATGGaagaacgaaaaataaaaagacCCCCAATAGACGTAA
TACCATACCCAAGTTTTTACCAACATCTATAGATTTATGGAGATTCCATG
CTTTTGGTATGCTGTTTTCAAGCGATCCTTTATCAAGCATATAATTTGCT
TCAAGACATTTCATTGATTGCTTTTCTAGCTTAACCTCCACATTCAAGTT
GCCCAAGGCATCTTTTTCAATGGCTCTCGTCTTCATACAGAATAAACGTA
ATGTCATTAGCCCGGTTAGAACAAACAAGTCTAAATAAGGGAGAGATAGG
GCAAATGTGATGAGAATATCACTGTAAAACTGACTCGAAGTCAAAGACAG
TTTTAGCGCTTTAGTTATTGTTTTGTTGTCCAGTAAAACGATCAATAATG
ATAAGATGGTAATGACAGCGAAACGGATGATTGTACCAGCATTGCCAGTA
AGGTGATCCAGAGCTATTGTGACCAATAGAATTGATGAAAACCAATGAAT
TGCCAACGCACAATGAATTTCAACGAAGATCCTCTTGCCGTAGTAGAAAT
ATTGTTGTGCCGCATGCAGATAAACAATGATTGATAAGAAATCCAGGACA
GCAAGTATACAATGGCGCATATCCTTTTTCGGTGAATTGAAACAAACACG
ATACAATGTTTGAATATTACATACCAATATTGCCAAGGAAATTAATGGTG
TTTGATACATGGTTTCGTACAATATTGGCTCAAGATAATCCATACTATCA
TAAAGTGATTTTCAAGATTGCCAATATAACTATCTAATTTATTTAATATC
TGTAAATCTTAAAGGGAATGAAAATATTAGGGTTTTTCAGCTCCGATAAC
AATACAAAAGTAATGCATCCGAAAACTAAAAGCATAGTAGCATCTAGAAC
TTGATCAAAAGTTTCCGTGGCACTATAAACattcagataaaaaaaacttg
acCAAAACATTCTGAGGCACTATAACATTCAGATAAAAAAACTTGAACGA
AAC Run BLAST on NCBI transcript from alignment at scaffold_64:113386..114940- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071879 ID=TCONS_00071879|Name=TCONS_00071879|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at scaffold_64:113386..114940- (Clytia hemisphaerica)
GGCGAAAACAATTCATTGAGAAATTTAAATTTAATGAAATAGAATTGATT
ACTCTCGGGTACCTAATAAACGGGGGGTCGGAATAAGTGGAATGGGTGGA
AAAATTCTTAAAAATTAATAAGCGGTGGGGTTGGAATGAATAAAAATGTT
CTGGGTGGAATATTTTTAAAAGGGAGCCAATACAGCAGAGTTAGGGCAAA
AGAGGGAACTTTCAAAAACATTTCCCCAAACATTAATAAGCAGGGGGTGG
TTGGAATAATAATCCTGGGTGAGAAATTTTCGAAGAATTAATTAGCAGGG
GGTTATCTTCTTATCCGAGAGTAAATATGTTTCGACTAATAATAAGATAA
TTACAAATTTAAAGATCATAAACTTGTTCTTTCGTTATCTGGCCATAGAA
CCGTGAATTAAAGATTGTTCGTAAACAGCTGATAAACATTGGCACAAGAA
ACAATCCATCATTTGTAGTAAAAGATGGCACCCAATAAGCAACCGAATAG
CACAAGTGGTATGGAAGAACGAAAAATAAAAAGACCCCCAATAGACGTAA
TACCATACCCAAGTTTTTACCAACATCTATAGATTTATGGAGATTCCATG
CTTTTGGTATGCTGTTTTCAAGCGATCCTTTATCAAGCATATAATTTGCT
TCAAGACATTTCATTGATTGCTTTTCTAGCTTAACCTCCACATTCAAGTT
GCCCAAGGCATCTTTTTCAATGGCTCTCGTCTTCATACAGAATAAACGTA
ATGTCATTAGCCCGGTTAGAACAAACAAGTCTAAATAAGGGAGAGATAGG
GCAAATGTGATGAGAATATCACTGTAAAACTGACTCGAAGTCAAAGACAG
TTTTAGCGCTTTAGTTATTGTTTTGTTGTCCAGTAAAACGATCAATAATG
ATAAGATGGTAATGACAGCGAAACGGATGATTGTACCAGCATTGCCAGTA
AGGTGATCCAGAGCTATTGTGACCAATAGAATTGATGAAAACCAATGAAT
TGCCAACGCACAATGAATTTCAACGAAGATCCTCTTGCCGTAGTAGAAAT
ATTGTTGTGCCGCATGCAGATAAACAATGATTGATAAGAAATCCAGGACA
GCAAGTATACAATGGCGCATATCCTTTTTCGGTGAATTGAAACAAACACG
ATACAATGTTTGAATATTACATACCAATATTGCCAAGGAAATTAATGGTG
TTTGATACATGGTTTCGTACAATATTGGTTCAAGATAATCCATACTNTGG
TGTTTGATACATGGTTTCGTACAATATTGGCTCAAGATAATCCATACTAT
CATAAAGTGATTTTCAAGATTGCCAATATAACTATCTAATTTATTTAATA
TCTGTAAATCTTAAAGGGAATGAAAATATTAGGGTTTTTCAGCTCCGATA
ACAATACAAAAGTAATGCATCCGAAAACTAAAAGCATAGTAGCATCTAGA
ACTTGATCAAAAGTTTCCGTGGCACTATAAACATTCAGATAAAAAAAACT
TGACCAAAACATTCTGAGGCACTATAACATTCAGATAAAAAAACTTGAAC
GAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071879-exon-scaffold_64-1575043694:113733..114940 | TCONS_00071879-exon-scaffold_64-1575043694:113733..114940 | Clytia hemisphaerica | exon |
| TCONS_00071879-exon-scaffold_64-1575043694:113386..113680 | TCONS_00071879-exon-scaffold_64-1575043694:113386..113680 | Clytia hemisphaerica | exon |
| TCONS_00071879-exon-scaffold_64-1510915933:113733..114940 | TCONS_00071879-exon-scaffold_64-1510915933:113733..114940 | Clytia hemisphaerica | exon |
| TCONS_00071879-exon-scaffold_64-1510915933:113386..113680 | TCONS_00071879-exon-scaffold_64-1510915933:113386..113680 | Clytia hemisphaerica | exon |
| TCONS_00071879-exon-scaffold_64-1491911889:113733..114940 | TCONS_00071879-exon-scaffold_64-1491911889:113733..114940 | Clytia hemisphaerica | exon |
| TCONS_00071879-exon-scaffold_64-1491911889:113386..113680 | TCONS_00071879-exon-scaffold_64-1491911889:113386..113680 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:113386..114940 - |
Blast
The following BLAST results are available for this feature:
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