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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071836 ID=TCONS_00071836|Name=TCONS_00071836|organism=Clytia hemisphaerica|type=transcript|length=608bp
TTTCAATCGCACCACACAGCCAACAGCACAGCAGCACATATCTGTCTGGT
TTCAGTTCATTTCGGTCAGTTTCATTAATCATGGCAGAAAACAATGTCAA
TCAGgTTCTCAATCATCAAGTGGCGAGCAAAATCAACAATCAGAGATGAA
CTTTCAGAATGTCACTGAAGCATGCCAagGAATCAAGCAAGAGTTTGctt
attcattttcaaaatgggCGGCAGCCTTTCAAGAAAGTGAAAAGATCGAC
ATGTTTTTCGAGAAAAGGTTGGATGAGCTTATTCAAGAAGCAGAAAAAGC
CGAAGACATTTTGAAATCACAGAAGGCAGCTTTAAAAGAGAAATTAAGAT
GTTTGACAAAGACATTAAATCAAGTTgtagaaaatgaaagttaaaataaa
tataatgcAGAATCTTTAGTCAAATTTTGTTCTTAATAAAATAGAGTTCG
ATCCCAGGGAAGGGGTGCTCGATTTAAAAAGTTTAGATTCTAAAGTCCCC
TTGGTCGGTCCCTTACCTTGATAGTACCCTTATAGAATATTTTAAATGAA
ATCTTAGCTCAAAGTATTTGTTTATTTATCATATATAGTTTTATGTGTTT
GTTATTTG Run BLAST on NCBI transcript from alignment at scaffold_64:2975..10784+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071836 ID=TCONS_00071836|Name=TCONS_00071836|organism=Clytia hemisphaerica|type=transcript|length=7810bp|location=Sequence derived from alignment at scaffold_64:2975..10784+ (Clytia hemisphaerica)
TTTCAATCGCACCACACAGCCAACAGCACAGCAGCACATATCTGTCTGGT
TTCAGTTCATTTCGGTCAGTTTCATTAATCATGGCAGAAAACAATGTCAA
TCAGgtagaaaattaatttttcaaggAAAGTACCCTCTTAATCATCGTCA
AGTTAACCAGCAGTAGGATAATCATCTGAAAtcatttattaaaatatata
aaacacTGTGTCAATCATCAATGTCCAGAATGTCAGAAATGTATCCATCA
TTTCCACCACAAGCAAGCAAAATAAATACCGTCAAGAATCATTAATTCAG
TCTAATACAAGCTACAATCATGGTAGAAacatattgagattttggtgTAT
TTTAgcgttttcagaatttaaaagtTTGGGCGAGAGAATAGTTTGTTTGG
GAGAACGCAACGACATATTGACTCAGTCATtagtaaaaaacttttgaaag
ggGGAGGGTTGCGACCCTTCTAAAGAGTGATTTTTTATGCTTAATTAACA
TCCTGCTATAACCTGTGTAAAGTTAACATTTTCAATAGCATCATGGCGTA
TTCTTTGTTTTAAAGTGTACATAGTAGGAGTAAATCTGGCGCCAGCTACT
CTGAGCCAATGCGCCAAGACCAATCTCGAGTCTGCGCCGGAGATATCCAA
AGcaaccaaagcagcaaaatttcaaaacaaatgtttctgCTCGCAGTCTA
atctaccattttagaatctcatATTTGCACACTAGCGAGTAGTTTTGGCG
AATTAGTCCTGGACAGAATCACGTGTAAATAAAACAGCGTGCTtggataa
taaaaaatcatgcgCGAGTATAAATTTTAAGATGGCGGGNtaattataaa
atttatttataagatgctttgttgtctttttttttctttgtgtaaacttg
catatgttttgcatacacgttgtcgtttttttttaataaggaaccttaac
tttgctctgagcctggagttccttatttttccagagcatttcagcctcaa
agttccttatcgagttccttatttacatagctgctcagtttggataacca
tctcttactgttccttaaaacttgttttcttattctcagcctgagcagtt
cctaaacaattccttattttttgaaccattttcagccttgagttccttat
aaacgtgttccttataaaaaaaaacatgtactttccaactaaatccaacc
acggctttttcgttcctctatttttgcttATAATTCAAGATggtggatgg
aaaggcgaaaaggtctattcagaTGTTTCTTGATGGCNctctatttttgc
atattaTTCAAGATGGTGGATGGAAAggggaaaaggtctattcagaTGTT
TCTTGATGGCCAATTGACATCTAGCTAATCTCAAATTTTAATAATGATAT
TAAACATAACTATACATGACATCACTTATGATTAGGAGATATACATTTTA
CAATCTTTTGATAATATTTAATTTCCTGCTTGTTATACTTGCATCCACCA
aagtgtggagtaattagttatgtAAAAGACTGTTGCCTTCGCTAAAAGGA
gtattgctattttagcacttcaactttctttcattgaattgaatatttca
atttggaggGGATTGATGGCtcctaggctatattccaagccttattggag
caaatttgagctttaaaATCCTGACATCCTAAGAGAcaccgtcctgatat
gaaatcaaatatgtcaataagaatgtcctgggttgaaaattttctgaaaa
attaattagcaagAGAGACTCTTTTTAGGTACCCAAGATTGATTTGGCAT
TACAccattgcaaaatatttttcatggaaattaaCCTTTTCTAATGCTAA
TGTAATCTaaataggaaacaaatattgaATTCTATTCTCTTTTGCTCata
cattttaaatttcaagataagAACAgctattaataaaataaatgtaaatt
gatattgacatatttaatgatgtcataatcaatgcatACTCCACCTCCAG
AGCACAGAAGgttcttattttattttcaatttttcacacagACTCAACAT
ATTCTCACTTTTAAATCTCTTGGCCTTGGGATTTCTCCAAAAGCCGATTA
AAATAAGATATTTTTACATACTCCACAAAATActtcatttacaaaatatc
CTCATTGATGTAACTCTGAAACATATTATATTCAACAAACTTCGAAacct
taaaatttttaaaatttacataatttcgaACACTTTGAGGGGTCCATCAA
TTTCATCCActgatattttacaaattacatAGCTGTTTTAAGATAACGAT
CGCAAATGTCATAATCAATTTTGTCAGTGCTGTAAATTTTTAACAAtctc
cttttcattggataaatgccatcaaaatatacaaaattgGATGATTACAC
ATAGATTTACCCCTGCAAATACAGCTTAGATTCTTATTCATTATGTCTAT
AAATTGAAGCTGGTAAAGACAATTGCATGGGTTAGgcgaaccctaaaaat
atttttgtttccggtccaccgggtgacgaaaaaaccactcacccggccgg
ccgcaaaaaatttttttttgctaaatttcgatcccaaaactcgatttttt
aaagcactcgtaGAAGTTAAAATGATGGTCTTCTTNTCTTTCATTgaatt
gaatatttcaatttggaggGGATTGATGGCtcctaggctatattccaagt
cttattggagcaaatttgagctttaaaATCCTGATATCCTAAGAGAATCA
AATATGtcaataagaatgtcctgggtggaaaattttctgaaaaattaatt
GGCAAGGGAGACTCTTTTTAGGTACCCAAGATTGATTTGGCATAACAcca
ttgcaaaatatttttcatgacaGTTAACTTTTTCTAATGCTAAtgtaatc
tagataggaaacaaatattgaATTCTATTCTCTTTTGCTCatacatttta
aatttcaagataagAACAgctattaataaaataaatgtGAATTGATATTG
agatatttaatgatgtcataatcaatgcatACTCCACCTCCAGAGCACAG
GAGGttcttatttcattttcaatttttcacacagACTCAACATATTCTCA
CTTTTAAATCTCTTGGCCTTGGGATTTCTCCAAAAGCCGATTAAAATAAG
ATATTTTTACATACTCCACAAAATActtcatttacaaaatatcCTCATTG
ATGTAACTCTGAAACATATTATATTCAACAAACCTCGAAaccttaaattt
tttaaaactttacatAATTTCGAACACTTTGAGGGGTCCATCAATTTCAT
CCactgatatttttaaattacaTAGCTGTTTTAGGATAACGATCGCAAAT
GTCCCGAAATATCACACCAACGTTATCCTACCGGGAGTAATCCTGGTTGG
ATACTGATTTGatattttataatatttataaattattgcccttaatgaat
gtgaattgaTATTGAcatatatttaatgatgtcataatcaatttTGTCAG
TGCTGTAAATTTTTAACAAtctccttttcattggataaatgccatcaaaa
tatacaaaattgGATGATAACACATAGATTTATCCCTGCAAGTACAGCTT
AGATTCTTATTCATTATGTCTATGAATTGAAGCTGGTAAAGACAATTGCA
TGGGTTACTGGCGATTAATGGGTTTTTTAAGCTATCTTCAGTTATAATAA
AAGGTAGAAATAACTGAACATGGAAAGGGTTCAATTTTATGTTTAGATTT
CCATTTCCATTTATATTGGATCCCCTTGCATGGTTTATAGACCATTCAAT
GACCCAAATAGCTCAAAATATTCTATTGTTTCTTGCTATAGATGgccaca
ttttttcttttttcacacTTTCCTTTCATGAAAAGTTGGACCCCATTCAG
TAGGGTAGGCTCTAATCCCATACAGACCCAAGGATATTCCATCTCACCTG
AGTGGGTTAGGCCTTAGCCCCACTCCATTTGAAAACTCCTTAAGTGGGAT
TTCGGCAAGTTTGGCTGGTTCGGTTCTCATATGAACAGAATCCTTTTTTC
ATGCAAAATAGTATAAAGGAGAGATGAATCTCAAATGAGATCCCAGTCTG
TTGGCCTGCTTCCATGTTAATGGCCCCTTTATTTCAATATCCTTATCTTG
GCCTTTATTGATTATTTAATTGTTGGTTCATTTCAGttgatatgattatt
ttttaggCAAAGACCAAGGTTGCAGATAAAGAGCAAAGTAAGAGCTTAAC
TTTAGTTGAGTAAGAAAATAGGGCTAGATTTGTAtgctctttttataaga
ataacctTTATAGAAATATTATGGTTAGTTTTTTGAGTTAAAACTTTTGA
GTTTAGAACACTAGAGAAAAAGAATCTTCCTCAGACTAACTATTCCAGAC
TCTATTCTCATGAAAAGcaggtatttttttctttaagtttTTATCTTATG
ATCAAGATTATTACTAatgtctgtccagatataattggcagtggaaacaa
gaatgcctgtaacttttgatagtcaaatataatatagtttcgaaataata
aatgataccaatagcaataataccaatgcaccaacacttaacattttcca
acgtTTAATTGCAcagttcaaaaaagataacatgacccccgtttttagta
ataagttggagatttgatatttcacagaaaaatgctaccaaggggtattt
cgggtcccatatcttctgaaggacttttttgtttgccttgaaatttaaca
aacttcttaacctaaggttgaactaccactggtttaaaaatgaacgttat
agcataactagaaaaaaagctcaatttttgcaatcgcaaatttaaccgct
aaaaatcgcgaatttttcaaccaaaaatacattcaaatacagCACCTTTG
ACTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtctctaaaacaagcaaaaaaa
atttccataattatatttgactatcaaaagttacaggcattcttgtttcc
actgccaattatatctggacagactttaggagaaattattttttttccaa
aaaaaatattttttttaaatactcccATGTCTTAATTGCATATCGAATAA
ATCCAGATTAATCCATTCATATgttctgaaaaattgaaatttatcttGGA
TTACTTGTTACTTTATGGTATGAATTCCCaagttaaaaaaatggaaaata
actcggaaagctaaaggaagcaaaaattcccgagttacaaattcaaaaat
aacttggaaagctaaaggaagaaagAATTCcagagttaaaaaatgaaaaa
taactttgaaagttaaaggaagcaaaataaaccgagttatgaaatgtaaa
atgacgtcactgaattccaaaaatgacgtcataactcgggataacttgGT
TTTTTcgtaattcggtttttttaactcggaaaaaataactcgggaattcc
gggcctctgACTTTATAACCTTAGAACTTCATTCTAGAACTACTAATAAg
cagtttttttattattaggTTCTCAATCATCAAGTGGCGAGCAAAATCAA
CAATCAGAGATGAACTTTCAGAATGTCACTGAAGCATGCCAaggttattt
ttgaaatttatttgaaacaTGTCAGAAGCTTTTTTCAGTATAATGAAAAG
GGAATTTCGGCGTGGAATTCTGGGCAAGGGAGCCAGTGTGAGATATATAA
ATAGCCGTATCAAAAGCGCAAATTGGGCTAacttgttttttctgatttta
ttaTAACCTTGCTTTAAAATGGAGGGGGttaatctaaagaatcctacatc
tactaaaaatagacaaaaagaaggacaaatttcataaaaaatgacatatt
gcgcatccacaaccccgacccgGTTAGTTTGTCCATGTTTATCACAGGAT
TTAACTACATATGGCTAAAAGAAAGagaaattacgcatgcgtgttataaT
GCAGGATtttttagaggaacagactgaaATTGAGGCGAATATATTGAATT
TTTAGTATTTGTTGATTTATGATGTAATCATTTTTATTGCATCTTTAGGA
ATCAAGCAAGAGTTTGcttattcattttcaaaatgggCGGCAGCCTTTCA
GTAAGTGAATTTAAActacaaaaatcaatttaaaatgaaacataaaaagg
gactaatATTAAAATTTGACCGTTCACAAAGACATTCCCATAGACTTTTT
TACGTTTTACTTACTTTGagggaattaattttggcgagcatgaaaatcct
aaaaaattttgaTCTCAACAATAACGAATTTTTTtaagtactttaatggg
ataaattttcgcgggaattaattttcgcggatttcccGGATTTcccggat
ttgggtgtcatccgcgaaaataagtcccattggaaatttgaaaaaggccc
atccgcgaaaattagtttcagcaaaaaattagtttcagcgaaaaatttga
attttttttgcaatccgcgaaatttctatttttatcgttttttatttttt
ttctacatgagggcacgcaaccctcgaaaaaggtcaaATCCTCGATATGC
TtgttagcaaaaaatcgttttcctcaaaattttcttcacaaatttagAAA
CTTGGAAAAggtattggaaaattttttatctaaagtgatcgcttattaaa
agcttttcaatgcaagagggtaatccaactggcttgaaatttaacattta
aaatgatatgtaagaaaaggagggaaaacggaaaacaaaattcttaattt
cctggaaaaaatttatttcaatgttttgacccttttcaaaaattttaatt
tgtaccccaatccgcgaaattaaatccccgcgaaaaatcaggaaatccct
catccgcgaaaattaatccccgcgaaatcttaaaattttgcggatgagct
caaccgcgaaatttaatcaccGCAAagatttatcccattaaagtagtctA
AAGGTACACTATTTCCATTTTACTAAGTGTGTAAGGTTCTGGGTTGATTC
TCAAATTAGGTCTAACCTATTTAAAAAATAGTACTTTTTACCTCTGCTTA
ATGTTTGTCGATTTAAAGCGTAAACAATGGTCAGCTAAACCAAAGAGAAT
CTCTCTACTGTGGTAATTgttctaagaatattttaatatCAGAAAATCAT
ACAATGTTTTGATATCCTATTATATCCTATGAGATGGTGCCTCTCTGCCT
AATGTTTATCAGTTGAAGCATAGACTGAACTGAACTGACAACTAGAGCCA
AAGGGAGAAAAACTGTTATAAGAATACTATAAGGAGTTTTATTTGAATCA
TAAAATCTTGAAGTCCTACTTTTGTGTTTTTAGAGAAAGTGAAAAGATCG
ACATGTTTTTCGAGAAAAGGTTGGATGAGCTTATTCAAGAAGCAGAAAAA
GCCGAAGACATTTTGAAATCACAGAAGGCAGCTTTAAAAGAGAAATTAAG
ATGTTTGACAAAGACATTAAATCAAGTTgtagaaaatgaaagttaaaata
aatataatgcAGAATCTTTAGTCAAATTTTGTTCTTAATAAAATAGAGTT
CGATCCCAGGGAAGGGGTGCTCGATTTAAAAAGTTTAGATTCTAAAGTCC
CCTTGGTCGGTCCCTTACCTTGATAGTACCCTTATAGAATATTTTAAATG
AAATCTTAGCTCAAAGTATTTGTTTATTTATCATATATAGTTTTATGTGT
TTGTTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071836-exon-scaffold_64-1491911889:2975..3078 | TCONS_00071836-exon-scaffold_64-1491911889:2975..3078 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1510915933:2975..3078 | TCONS_00071836-exon-scaffold_64-1510915933:2975..3078 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1575043694:2975..3078 | TCONS_00071836-exon-scaffold_64-1575043694:2975..3078 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1491911889:8593..8667 | TCONS_00071836-exon-scaffold_64-1491911889:8593..8667 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1510915933:8593..8667 | TCONS_00071836-exon-scaffold_64-1510915933:8593..8667 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1575043694:8593..8667 | TCONS_00071836-exon-scaffold_64-1575043694:8593..8667 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1491911889:9123..9174 | TCONS_00071836-exon-scaffold_64-1491911889:9123..9174 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1510915933:9123..9174 | TCONS_00071836-exon-scaffold_64-1510915933:9123..9174 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1575043694:9123..9174 | TCONS_00071836-exon-scaffold_64-1575043694:9123..9174 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1491911889:10408..10784 | TCONS_00071836-exon-scaffold_64-1491911889:10408..10784 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1510915933:10408..10784 | TCONS_00071836-exon-scaffold_64-1510915933:10408..10784 | Clytia hemisphaerica | exon |
| TCONS_00071836-exon-scaffold_64-1575043694:10408..10784 | TCONS_00071836-exon-scaffold_64-1575043694:10408..10784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:2975..10784 + |
Blast
The following BLAST results are available for this feature:
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