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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071763 ID=TCONS_00071763|Name=TCONS_00071763|organism=Clytia hemisphaerica|type=transcript|length=2968bpRun BLAST on NCBI protein sequence of TCONS_00071763-protein >TCONS_00071763-protein ID=TCONS_00071763-protein|Name=TCONS_00071763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp MMHGSQTEPAISSMTSERNHKNLSHGSRTSINSQRSTNKKVNSHVSFDESRun BLAST on NCBI transcript from alignment at scaffold_63:814336..906746- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071763 ID=TCONS_00071763|Name=TCONS_00071763|organism=Clytia hemisphaerica|type=transcript|length=92411bp|location=Sequence derived from alignment at scaffold_63:814336..906746- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:814336..906746- >TCONS_00071763 ID=TCONS_00071763|Name=TCONS_00071763|organism=Clytia hemisphaerica|type=CDS|length=19836bp|location=Sequence derived from alignment at scaffold_63:814336..906746- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071763 vs. Swiss-Prot (Human)
Match: CACB2 (Voltage-dependent L-type calcium channel subunit beta-2 OS=Homo sapiens GN=CACNB2 PE=1 SV=3) HSP 1 Score: 404.445 bits (1038), Expect = 3.446e-127 Identity = 215/421 (51.07%), Postives = 270/421 (64.13%), Query Frame = 3
Query: 579 DGRKTSGTSSEYGDGEDLEALRILALEKLQA----ARTRPVAFAVRANYGYNGSEDDDSPVHGMAVSFEKDDCLHIKDKFNKDWWIGRVVKEGHNIGFVPSPDKLESIR----QSGVSGKL-------------------KMRQSSTSSNMNL---------HDDPQNQRSPLGEAGGNNSFDDETVNSPVRXXXXXXXXXXXXXXXXXXXAQKGKKGIFKKNEQLHPYYVIPSMRPIIFVGPSLKGYEVTDMMQKALFDYLKHRFSERIIFTRVNADISLAKRSNLNNQNRQPNFPKKSNGQAGLAEVQEEVNRIFELCRSSQLVVLDCDTINNPSQVIKTSLAPIIVAIKIASPKVLTRLIKSRGKNQVKHLNIQMIAADKLSQCNEEMFDVVLDENQLEDACEHLGEFLEAYWRAAVP 1733
D + + S+ ED EA+R A + QA A+T+PVAFAVR N Y+ + +DD PV GMA+SFE D LH+K+KFN DWWIGR+VKEG IGF+PSP KLE++R Q GK + + SS +++ +D P N RSP A +V SP ++++ + FKK E PY V+PSMRP++ VGPSLKGYEVTDMMQKALFD+LKHRF RI TRV ADISLAKRS LNN ++ ++SN ++ LAEVQ E+ RIFEL R+ QLVVLD DTIN+P+Q+ KTSLAPIIV +KI+SPKVL RLIKSRGK+Q KHLN+QM+AADKL+QC E+FDV+LDENQLEDACEHL ++LEAYW+A P
Sbjct: 75 DSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAEENDIPANHRSPKPSAN--------SVTSP--------------------HSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAII-ERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHP 466 The following BLAST results are available for this feature:
BLAST of TCONS_00071763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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