TCONS_00071732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071732
Unique NameTCONS_00071732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071732 ID=TCONS_00071732|Name=TCONS_00071732|organism=Clytia hemisphaerica|type=transcript|length=1262bp
tttttattgataaattaAAAACCTCATGCCAATATCTATAACATGATGTC
ATATCTCTTTAGATAATAGGTCTATTAAtttatgttaattcatgcggtTA
TGATAAGCAACAAATTTATGCAACCATCATGCTGACTTTagcatttgaaa
atattatagtATAAAACCCCCTGGAATACAGACATCTTTTACATTCGTTT
ctcaatgtttttttcttcttatccTCTCTACATATCTTTGAGATATTCGT
GGAACTGAGCACGGAGTCGAATGGTACCGTGGCTGTTTGCTCGTCGACTG
ATATATTTAATGTGGAAAGAAATATGATCAGATGTTAGTTGTTCGCCGGC
TAGCTAAAAGGAAGTCAAATGTCTGAAAACATTGCGTCAGCAGTAGCCTC
GAATTCGTGCTGTTCTCATGACAACAAACAGCCTCGTTCTCAGTCCTGCA
TTATTGAACAATCTAATAATTTCCCCAAAATGGTAGACAATACACCACGA
AGTATTTTAAAGAAATCTGTTAGTGCTGATGCGGCGTCCATTGCTATTTT
GAGAGAAAGTTTACTGGAATCGAAGTGTTTGTCTATCAGCTTGTCAGACA
CTAATATAGCTCTATCGTCTTCGTGTGACGGTTCCACGACGCCAGAGGAG
CCAAAAACACCAACCAAAAATGTAACATTTGCTGACGACAACAATTTATC
TTTATGCAAAGTTCATAATTTTGTACCGAGTAGTGAAAAACTTGATCAGT
GGCAATTCAACGTGTTTCATCAAACTCATTTCAAGACGGACCGTTTATCC
GGAAATCAACTTATGAATCCGGTCAAAGGTAAGAAAGTAATCCGGAAACC
TAACGAGTTGTTATTATGTTTCAAGGAGCCGTGTTCGAATGATGATTTCG
AACAACGTTTTAAATATAAATGTGTGGCTTTAGAAAGATGTGCTACTCGC
AATCGGACCTTGACTGGTATCATTCTTGTCAAAAACATCGAATTTCATAA
ATACGTCGCTGTTCGGTACACGGTTGATCGTTGGAAAACGAGTGATGAGG
TTGAAGCGTGTTACGTTCCAAACTCTAACGACGGTGAGACCGATCGTTTC
TCTTTCACGCTTGCTTTACCGAGAAGTTACAAAGAAATGGAATTTGCGAT
TTGCTATAAAACAGGTGCTCATGAGTACTGGGACAATAATTATAATAGAA
ACTATAAAGTGAAAGATGCCCTATCCCCTGCTTCATTAGCTTAAGTTATT
AAGTAATTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00071732-protein

>TCONS_00071732-protein ID=TCONS_00071732-protein|Name=TCONS_00071732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MSENIASAVASNSCCSHDNKQPRSQSCIIEQSNNFPKMVDNTPRSILKKS
VSADAASIAILRESLLESKCLSISLSDTNIALSSSCDGSTTPEEPKTPTK
NVTFADDNNLSLCKVHNFVPSSEKLDQWQFNVFHQTHFKTDRLSGNQLMN
PVKGKKVIRKPNELLLCFKEPCSNDDFEQRFKYKCVALERCATRNRTLTG
IILVKNIEFHKYVAVRYTVDRWKTSDEVEACYVPNSNDGETDRFSFTLAL
PRSYKEMEFAICYKTGAHEYWDNNYNRNYKVKDALSPASLA
Run BLAST on NCBI

transcript from alignment at scaffold_63:335257..336907-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071732 ID=TCONS_00071732|Name=TCONS_00071732|organism=Clytia hemisphaerica|type=transcript|length=1651bp|location=Sequence derived from alignment at scaffold_63:335257..336907- (Clytia hemisphaerica)
TTTTTATTGATAAATTAAAAACCTCATGCCAATATCTATAACATGATGTC
ATATCTCTTTAGATAATAGGTCTATTAATTTATGTTAATTCATGCGGTTA
TGATAAGCAACAAATTTATGCAACCATCATGCTGACTTTAGCATTTGAAA
ATATTATAGTATAAAACCCCCTGGAATACAGACATCTTTTACATTCGTTT
CTCAATGTTTTTTTCTTCTTATCCTCTCTACATATCTTTGAGATATTCGT
GGAACTGAGCACGGAGTCGAATGGTACCGTGGCTGTTTGCTCGTCGACTG
ATATATTTAATGTGGAAAGAAATATGATCAGATGTTAGTTGTTCGCCGGC
TAGCTAAAAGGAAGTCAAATGTCTGGCAAGCTGTCTACTGTTTATCTGGA
AGATCGATTCATATCCACATTAAAAGGAGTTCTAGTTTCCTATTTTATTG
GTTAAAACTCTGGTAATTTTTTCATTGAAATTTGTTGTTATTTTTGCCAT
AAACAAAGTTGGCTGAGGTAACAGAGACAAATAAAGACATGACTTTGATA
TATACTCCTGGTTATCGAGCTGCAAACACAGGGAGCGGGTCTCCCTTACG
CTGTTCAAGTCCTATCAGTTTTCGATCATCTGCTCGCACCGATACCTCAA
AAGATATGGATGGTACGCAGGTAATTAGCACATCACCTCACAGTCGAGTC
TTGGCTGAACGAATGAAGGAGATTCAAATTTCACTTTCCTTTGAAGATCT
TTCTTCATCTATAGAAAACATTGCGTCAGCAGTAGCCTCGAATTCGTGCT
GTTCTCATGACAACAAACAGCCTCGTTCTCAGTCCTGCATTATTGAACAA
TCTAATAATTTCCCCAAAATGGTAGACAATACACCACGAAGTATTTTAAA
GAAATCTGTTAGTGCTGATGCGGCGTCCATTGCTATTTTGAGAGAAAGTT
TACTGGAATCGAAGTGTTTGTCTATCAGCTTGTCAGACACTAATATAGCT
CTATCGTCTTCGTGTGACGGTTCCACGACGCCAGAGGAGCCAAAAACACC
AACCAAAAATGTAACATTTGCTGACGACAACAATTTATCTTTATGCAAAG
TTCATAATTTTGTACCGAGTAGTGAAAAACTTGATCAGTGGCAATTCAAC
GTGTTTCATCAAACTCATTTCAAGACGGACCGTTTATCCGGAAATCAACT
TATGAATCCGGTCAAAGGTAAGAAAGTAATCCGGAAACCTAACGAGTTGT
TATTATGTTTCAAGGAGCCGTGTTCGAATGATGATTTCGAACAACGTTTT
AAATATAAATGTGTGGCTTTAGAAAGATGTGCTACTCGCAATCGGACCTT
GACTGGTATCATTCTTGTCAAAAACATCGAATTTCATAAATACGTCGCTG
TTCGGTACACGGTTGATCGTTGGAAAACGAGTGATGAGGTTGAAGCGTGT
TACGTTCCAAACTCTAACGACGGTGAGACCGATCGTTTCTCTTTCACGCT
TGCTTTACCGAGAAGTTACAAAGAAATGGAATTTGCGATTTGCTATAAAA
CAGGTGCTCATGAGTACTGGGACAATAATTATAATAGAAACTATAAAGTG
AAAGATGCCCTATCCCCTGCTTCATTAGCTTAAGTTATTAAGTAATTTTC
T

Coding sequence (CDS) from alignment at scaffold_63:335257..336907-

>TCONS_00071732 ID=TCONS_00071732|Name=TCONS_00071732|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_63:335257..336907- (Clytia hemisphaerica)
AAAACATTGCGTCAGCAGTAGCCTCGAATTCGTGCTGTTCTCATGACAAC
AAACAGCCTCGTTCTCAGTCCTGCATTATTGAACAATCTAATAATTTCCC
CAAAATGGTAGACAATACACCACGAAGTATTTTAAAGAAATCTGTTAGTG
CTGATGCGGCGTCCATTGCTATTTTGAGAGAAAGTTTACTGGAATCGAAG
TGTTTGTCTATCAGCTTGTCAGACACTAATATAGCTCTATCGTCTTCGTG
TGACGGTTCCACGACGCCAGAGGAGCCAAAAACACCAACCAAAAATGTAA
CATTTGCTGACGACAACAATTTATCTTTATGCAAAGTTCATAATTTTGTA
CCGAGTAGTGAAAAACTTGATCAGTGGCAATTCAACGTGTTTCATCAAAC
TCATTTCAAGACGGACCGTTTATCCGGAAATCAACTTATGAATCCGGTCA
AAGGTAAGAAAGTAATCCGGAAACCTAACGAGTTGTTATTATGTTTCAAG
GAGCCGTGTTCGAATGATGATTTCGAACAACGTTTTAAATATAAATGTGT
GGCTTTAGAAAGATGTGCTACTCGCAATCGGACCTTGACTGGTATCATTC
TTGTCAAAAACATCGAATTTCATAAATACGTCGCTGTTCGGTACACGGTT
GATCGTTGGAAAACGAGTGATGAGGTTGAAGCGTGTTACGTTCCAAACTC
TAACGACGGTGAGACCGATCGTTTCTCTTTCACGCTTGCTTTACCGAGAA
GTTACAAAGAAATGGAATTTGCGATTTGCTATAAAACAGGTGCTCATGAG
TACTGGGACAATAATTATAATAGAAACTATAAAGTGAAAGATGCCCTATC
CCCTGCTTCATTAGCTTAAATGTCTGAAAACATTGCGTCAGCAGTAGCCT
CGAATTCGTGCTGTTCTCATGACAACAAACAGCCTCGTTCTCAGTCCTGC
ATTATTGAACAATCTAATAATTTCCCCAAAATGGTAGACAATACACCACG
AAGTATTTTAAAGAAATCTGTTAGTGCTGATGCGGCGTCCATTGCTATTT
TGAGAGAAAGTTTACTGGAATCGAAGTGTTTGTCTATCAGCTTGTCAGAC
ACTAATATAGCTCTATCGTCTTCGTGTGACGGTTCCACGACGCCAGAGGA
GCCAAAAACACCAACCAAAAATGTAACATTTGCTGACGACAACAATTTAT
CTTTATGCAAAGTTCATAATTTTGTACCGAGTAGTGAAAAACTTGATCAG
TGGCAATTCAACGTGTTTCATCAAACTCATTTCAAGACGGACCGTTTATC
CGGAAATCAACTTATGAATCCGGTCAAAGGTAAGAAAGTAATCCGGAAAC
CTAACGAGTTGTTATTATGTTTCAAGGAGCCGTGTTCGAATGATGATTTC
GAACAACGTTTTAAATATAAATGTGTGGCTTTAGAAAGATGTGCTACTCG
CAATCGGACCTTGACTGGTATCATTCTTGTCAAAAACATCGAATTTCATA
AATACGTCGCTGTTCGGTACACGGTTGATCGTTGGAAAACGAGTGATGAG
GTTGAAGCGTGTTACGTTCCAAACTCTAACGACGGTGAGACCGATCGTTT
CTCTTTCACGCTTGCTTTACCGAGAAGTTACAAAGAAATGGAATTTGCGA
TTTGCTATAAAACAGGTGCTCATGAGTACTGGGACAATAATTATAATAGA
AACTATAAAGTGAAAGATGCCCTATCCCCTGCTTCATTAGCTTAAATGTC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044547XLOC_044547Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071732-proteinTCONS_00071732-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071732-exon-scaffold_63-1575043694:336533..336907TCONS_00071732-exon-scaffold_63-1575043694:336533..336907Clytia hemisphaericaexon
TCONS_00071732-exon-scaffold_63-1575043694:335257..336143TCONS_00071732-exon-scaffold_63-1575043694:335257..336143Clytia hemisphaericaexon
TCONS_00071732-exon-scaffold_63-1510915933:336533..336907TCONS_00071732-exon-scaffold_63-1510915933:336533..336907Clytia hemisphaericaexon
TCONS_00071732-exon-scaffold_63-1510915933:335257..336143TCONS_00071732-exon-scaffold_63-1510915933:335257..336143Clytia hemisphaericaexon
TCONS_00071732-exon-scaffold_63-1491911889:336533..336907TCONS_00071732-exon-scaffold_63-1491911889:336533..336907Clytia hemisphaericaexon
TCONS_00071732-exon-scaffold_63-1491911889:335257..336143TCONS_00071732-exon-scaffold_63-1491911889:335257..336143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:335257..336907 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134768	0.0222777	0	0.261252	0.0908713	0.16796	2.77861	2.45491	2.56386	5.43935	3.10843	2.92374	3.43428	1.19487	0.316376	1.04348	8.26877	19.0507	12.745	13.5818	6.2158	8.4293	5.54028	7.64992	12.4253	17.5007	4.14238	3.59541	0.265603	0.0910707
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005036CBM21_dom
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00071732 vs. Swiss-Prot (Human)
Match: PPR3C (Protein phosphatase 1 regulatory subunit 3C OS=Homo sapiens GN=PPP1R3C PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 6.196e-21
Identity = 60/187 (32.09%), Postives = 92/187 (49.20%), Query Frame = 3 
Query:  672 VTFADDNNLSLCKVHNF--VPSSEKLDQWQFNVFHQTHFKTDRLSGNQLMNPVKGKKVIRKPNELLLCFKEPCSND-DFEQRFKYKCVALERCATRNRTLTGIILVKNIEFHKYVAVRYTVDRWKTSDEVEACYVPNSNDG-ETDRFSFTLALP---RSYKEMEFAICYKTGAHEYWDNNYNRNYKV 1211
            V FAD   LSL  +H F  +P     D            + D L  N + + +K      +   L+L F +P ++   F   F+   V LE C+ + RT+TG + VKN+ F K V +R T D WK   +V+  Y+ N   G ++D FSF + LP    + +++EF I Y      +WDNN  +NY++
Sbjct:   85 VVFADSKGLSLTAIHVFSDLPEEPAWD-----------LQFDLLDLNDISSALKH----HEEKNLILDFPQPSTDYLSFRSHFQKNFVCLENCSLQERTVTGTVKVKNVSFEKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAIDLPPVIPTEQKIEFCISYHANGQVFWDNNDGQNYRI 256
The following BLAST results are available for this feature:
BLAST of TCONS_00071732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPR3C6.196e-2132.09Protein phosphatase 1 regulatory subunit 3C OS=Hom... [more]
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