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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071699 ID=TCONS_00071699|Name=TCONS_00071699|organism=Clytia hemisphaerica|type=transcript|length=563bp
AAAAATCAAAGGGGGAGAGAGAGAGGTAGTAAAAAGGACCATCCCCAAAA
TATAAAAGTGTATTATTTAATGGATGATATTAATTATGATTTAATTATAG
GCAACAATGACAATAACTTGAAAGTTATGCACAAAAGATGGAAAAACATT
GCAAATACAGAACTAACAAAAACAAGATAATTATATTTGATATGAGCTGA
TAGTACATTGAAACAAAAAGTATATTATGGAGAACGATTATGCGGAAAAG
AGGCTTCGTGCCTTGGAAAGGCTATATCTTTCACCTAACAATATCCCTAG
AGAAATGTTCAGTGCTGAAACCTTACTGGATATTCTCATTGTTTTGTATG
ACGAATGTAACACAACTGTCATGAAGAGGGATAAACGTGTTGTTGACTTT
CTGGAAGTTGCTAAACCTGTTGCAACAAGAGTGAAGAATTTGAGATTGAA
ACGTGAGGACTTTGAAACTCTCAATGTTATTGGAAGAGGAGCATTTGGAG
AGGTAAGATTTGTCATCAACCTTTTGAGGATCTATATATCAAGATCAGAT
ATATAGTGGTTTC Run BLAST on NCBI protein sequence of TCONS_00071699-protein >TCONS_00071699-protein ID=TCONS_00071699-protein|Name=TCONS_00071699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MENDYAEKRLRALERLYLSPNNIPREMFSAETLLDILIVLYDECNTTVMK
RDKRVVDFLEVAKPVATRVKNLRLKREDFETLNVIGRGAFGEVRFVINLL
RIYISRSDI Run BLAST on NCBI transcript from alignment at scaffold_63:1235915..1243549+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071699 ID=TCONS_00071699|Name=TCONS_00071699|organism=Clytia hemisphaerica|type=transcript|length=7635bp|location=Sequence derived from alignment at scaffold_63:1235915..1243549+ (Clytia hemisphaerica)
AAAAATCAAAGGGGGAGAGAGAGAGGTAGTAAAAAGGACCATCCCCAAAA
TATAAAAGTGTATTATTTAATGGATGATATTAATTATGATTTAATTATAG
GTAAATGGCTTTTAAAATCAACTAGTGGAATTCATTAATTTGTAGTTATA
ATATAAGTACATATAATaagtagattttttatttcaaaaggtcattcctt
tttttaatttctcttggcttttgttttgatgatttttgacaTATCtctct
gtttgtttgtttgtttgatttgtttatttgtccTGAAAATGAATGTTTAC
TTTTTGGGCTAGaaagtatataaaaaaaatttcaaagtgcattaaaaata
aaacttagcTAACCAGATGCCAGACAGGCGCGCAGCTGATATGGCTGAAC
ACAGTTGGTGAAATCAAAATTCTCAATGACTGGTGGTCACatatagcctg
gagatccatgctatcaTTTCTTCTTGTTTGCGTTGAGTTTAAATTTTCCA
TATCCTAATTGACGATTGAAAATGCAGGCAGTCaaattttgttcattctt
tcactggtcacactacGACcgacggcatggcccgaacNCCACTGAAAGCA
TAcaatttcacttgctttcaccttcGCGCACAAATTCGcaactttaaaag
tacagttttgaattagctttgataaaaaaaatattttttcattggccagc
gTGCNGATGTTcgttcgggcctgttcggaccatgctcgggccacaaaaaa
gtattattgaatcagcccgaacattttgtttgaaccatgttcgggccatg
cagttagtcacactaggaaatctagctttcagaaaaaacaaaggtccggc
aaaatttctgggaGATGCCTATCCGGCANCTTCATCGCgtctttttaact
ttcgttttgggtatgaacaaactcaatgttggtgcaaATAGACAAAAACT
CAACAAAGACGGGTGGGAAGGTGAGATCAACGCGATGGCAGACATGATTG
TAAAAAATTGTGCTATCGAAGATGTAcaggcatcgaaataagggatagaa
agtgcatcgcaattttttgataagcatgattttgcatcctaaaatggatc
aattttcaatttttagcttgtaagtaatccaaaaacgcatcgcgaattgc
gaaatgcgatatgctaattcgatccctgatgtaaaagttggtttcaaaaa
ttttggccgataagggGGGGAGAGGGTCTGGagcttatcggcccaatgcc
gataaaaaattcgaaagttttttgtcgaagaccccttatcatcatccatt
gttaaatattttcattagacaaattcaaagttccaaataccagtttgatt
cacaaagttgtataacagtacaaaaaacaaTCCAGttgcttcgaatagga
gaagatcacgagaaaagggaacgggataaagaataaaaagaagaccatat
tatgtaagattcaaatcattctttttaataattttcctaacttaattgga
aaatagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTACCTTAT
GGCCcaccaaaaaatcaatttagaCTACCTTAGACCTTTGGACCACACTT
TTTGGCCTCATAGTGCGTGAAGCCCTAGGCAACTGGCTGACTTCTAATGA
AGTGCTGGGAAAATTTTTCAGGGGTCTCCATGGGCTTGCCATGGAGCTCA
AAAGGGAACCCCCTTTTCAATATTCTGGGGACTTGGTAAAGGATCTGCCC
CAACTGAGGTTCCAGTTGTTCTTGACTAAATTTTCACTACACTGTGCTCC
ATGAAACTGGAAGTACCCAGGCAGTCCCCCTATGGCCATGGCTCCTTCGT
AAAAGTGAAAGACACATCTGGACTTATTTCATACTTTTCAGTCCCTAGTT
AGTTTGTAGTTATTCTGACTTCCTGGGACTTTGAGagttattttctttgt
ttttcaactgTTTGAATGATTTTCTGAAAGATCGACACCAATGGGATTCA
AacccactaaatgtaaagttccGATAATAAGAAACCCAGAGCcaagccat
ttttcatgccctttaagcGTCCGGTTAtcttgaaattactaaaatattgg
taaaaacagcctttttagtggaaaaacactggaaaaagtgccctttttgg
ccaccaacggacgctaccttgcctttctaaaatatggcctgggAGCCCTG
CCTATCCACTGCGCTACGGATTCATACCAGCAGAAGATCGTTTCTAACGG
CTATTTATACTGTACGTACATACAAACTACAGAATTTACCATATTAAGAG
AAAATtgcaaaagagtgcttgtttcgagctctaaccctaaccctaactga
aaataacccaattcctagccaatctgatacataaccatacccaaccctac
taggttgcctgcaggtcctgacattGTCAGATCCGAAAAATATAGATGTG
TCTTTTGCTTTCATCATCAAGCATTATCCTGGCCAGACGATGCTTAACAT
CAATGGCATGGGTGCCTTAATCATATGTTTCTCTCTTCCCTGtgtcaatc
aaattactcaCAATTGAAACATGCGAAATCTATATGTCAGGTGTATAGAA
ACTCAAAACttaattattttgtttgtttattttagtCCAGTTAGAATGAT
AtaaatcaaataattttttagagttttaaggTGAGTCATAAGGTAGGCCA
TATGGCTGGGCCAATGAGGCCAATCTGTCTGAGTTATATTATAATATTTT
GAATTATATGCAAAATTACAGGAACAAAAAGGATGACCCATGGTATGGCC
TGAACTTTTCAGGTAATGTTTATGCCAAAATAGCTAAAAAGATTTCTGcc
acaaaattttgaatttttgcatAGGTCATCATGTTAAGAGACTatttcaa
tttcacaattgTCAAGTGGCCTTAAAAATTTCTGTCCTTACcatggttgg
atttagttggaaaatatgcaaaacatataccgtgagattgagTAAttctt
gcatcagtggaggctaacatacatagccctcaaatgaaaaacctggctgg
tcattaaaatacaaagttaaatcaaaacaaaatggtagagtagagctgcg
accggagctgcgtagttgtattttaatgaccagacaggtcattcatttga
gggctatgcatgttagcctccactgatgcaagttacccaatctcaggGTA
GAACTTTACACACTCAGATTATAAAGACAACAAAGGATTTTTTAAATGTT
ATACTCGTTTTTGTATAACAATAAAATATGGAATTTTATACCTccatcta
attctgacacccctCAAATTTTTACCTCAATTGCTGTATAAACATATTGA
TCATATATTTTTAAAGCACAAACGAGATATTATTTCtgtagatcagattc
ttttaataaagacAATGTTTTTCTCGTACTATTTTTTACAatcgatgttt
gtttatctttgttgaCTAGCACTATTGTTAAATATGTCTGTAAAATATAT
AGGCTGAACAATAAATGAAAACTACCAATATCAAGGGGATTCTCTGACTG
GTAGAGagaaagaaatcatttttaatcagtgattctgacATTTCTATTAC
AGTCTGACAGTTTACTGCTAGTTATTCTAAGTTCCACAGAGGATAAGAAT
TTACTACAAGTGGCTAGAAATTTGTTTTCCTGTCAGATTTAAACTTAACC
TTAATGTTTTAAATATGAAAGTGTTATGATCACAGAAAGTCAATGTTCTC
ACTGGACTACTGTACATCTCAATAAGACTTGAATAACTGAGAGTGATTTA
GGCTATAATTGACCCCAAGAAGAATAGAAATCGCTTTGAATAACTGAAGT
TTTGAATAACTAAGAGTGTTTTTGCCTGAGTTGGGTTAGAAGATCCAAGA
GGGTCGCCATCTCACTTCAAATAATTGAATTATTCCAATCAGTACAGGTT
CAAATAACAGGGAGTCCATTGTAAATATCTTTAAAGACTGGTGTTGAAAT
TAGATGAGGGGTGTCGACAAAAGAACATTTCACGgtatataattcaaaaa
gaaagaacTGTACCTTATAATGCTGATATACCTTGTATGATTCCGTCATA
GCATCTATCTATATGGTCTTTTAATGTTTATTAATGAAAACTAAGtaagc
tgtttaaaaaaatcactgtAACCACTTTGCTAGAGATGGATATAAAGACT
TTCCTTTTCAAGCAAGAAAATATTAGAACCCTCGTTTTGATATACAAGAA
TCAGCGCAACAAGTTAATTTATAAATAAGTATTTAGCTGCTATCAATTAG
GGGGTTCAGAtctatgttttgatttgaaatatgATGTCACTTTGCAGGGA
TATTCCCAAGAGAATATAATCTACCATCAGAATTATAAGAAGTCTGACTG
TGCCAGGTATTGATTCCATAATATCATCATGCATTATTACTTGTAAGTAA
AAGTGTAAAATGTAGTATATTTTTAGCTTGTAATTTTTGGTAGAGATCCT
CAACTTAATGATTTTCTAGACCTCTTTTAAGCTCCATTGAAGAAATCTtg
tggtattttttattttttaggttGGTTAGAGTTTGTAAAAGTACAGTAAC
ATACTTTTAGTCGTTACTTCATGTATGTAGTTATAaagaataaagaataa
aaagcaTAAAATCATTCTAGCCATTTGGAATATAGGCATTGGGTAACCTG
GGGAATATCCTTAAGTAATCACTTTCAAGCAGTAAGCAAGAGACATTTAC
ATCTAGAAACCATAGATTGATCAAAAGTTTGTCTGCTTGCATAAGTTTTC
TATATTCATTAGAATACTAACTTTTACAGCTTGTAAATGCTAAATGGCAA
AGCTAAACCCAAATTTACTAATGGTTAACATCAATTTATCTACTTCCtcc
ttttaatttgaaaaattataaatgAATTGTTAGCATCATTATGCAACCGT
CTCTGGATGTTTTTTGTTGTCAAGTTGTATTCATTTTAGTGAATGAATTT
ATCCTTGTTATGATTtgatttaaaatattgatgCATCTCTATTTACCAGG
CAACAATGACAATAACTTGAAAGTTATGCACAAAAGATGGAAAAACATTG
CAAATACAGAACTAACAAAAACAAGATAATTATATTTGATATGAGCTGAT
AGTACATTGAAACAAAAAGTATATTATGGAGAACGATTATGCGGAAAAGA
GGCTTCGTGCCTTGGAAAGGCTATATCTTTCACCTAACAATATCCCTAGA
GAAATGTTCAGTGCTGAAACCTTACTGGATATTCTCATTGTTTTGTATGA
CGAATGTAACACAACTGTCATGAAGAGGGATAAACGTGTTGTTGACTTTC
TGGAAGTTGGTAAATGAATTTTATTGTAATATGCTCAAATGTCATTGAAA
CAATATGTGTTAATTTACAATATCCTGTAACTTTTGGATAGTGATGCTTT
CATATTGATACTGANTTGTAATATGCTCAAATGTCATTGAAACAATATGT
GTTAATTTACAATATCCTGTAACTTTTGGATAGTGATGCTTTCATATTGA
TACTGACTTGCTAACATATTCCCATAGGAAGGAAAAATCCCCTTTGATAT
TGCTATTTAAAAATTTCTCCTCCAGTCACCATAATAAATATCCATACTGT
CACATTTTATAACTACATTTGAATTTTAGCTAANTAATAAATATCCATAC
TGTCACATTTTATAACTACATTTGAATTTTAGCTAAACCTGTTGCAACAA
GAGTGAAGAATTTGAGATTGAAACGTGAGGACTTTGAAACTCTCAATGTT
ATTGGAAGAGGAGCATTTGGAGAGGTAAGATTTGTCATCAACCTTTTGAG
GATCTATATATCAAGATCAGATATATAGTGGTTTC Coding sequence (CDS) from alignment at scaffold_63:1235915..1243549+ >TCONS_00071699 ID=TCONS_00071699|Name=TCONS_00071699|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_63:1235915..1243549+ (Clytia hemisphaerica)
ATGGAGAACGATTATGCGGAAAAGAGGCTTCGTGCCTTGGAAAGGCTATA
TCTTTCACCTAACAATATCCCTAGAGAAATGTTCAGTGCTGAAACCTTAC
TGGATATTCTCATTGTTTTGTATGACGAATGTAACACAACTGTCATGAAG
AGGGATAAACGTGTTGTTGACTTTCTGGAAGTTGCTAAACCTGTTGCAAC
AAGAGTGAAGAATTTGAGATTGAAACGTGAGGACTTTGAAACTCTCAATG
TTATTGGAAGAGGAGCATTTGGAGAGGTAAGATTTGTCATCAACCTTTTG
AGGATCTATATATCAAGATCAGATATATAGATGGAGAACGATTATGCGGA
AAAGAGGCTTCGTGCCTTGGAAAGGCTATATCTTTCACCTAACAATATCC
CTAGAGAAATGTTCAGTGCTGAAACCTTACTGGATATTCTCATTGTTTTG
TATGACGAATGTAACACAACTGTCATGAAGAGGGATAAACGTGTTGTTGA
CTTTCTGGAAGTTGCTAAACCTGTTGCAACAAGAGTGAAGAATTTGAGAT
TGAAACGTGAGGACTTTGAAACTCTCAATGTTATTGGAAGAGGAGCATTT
GGAGAGGTAAGATTTGTCATCAACCTTTTGAGGATCTATATATCAAGATC
AGATATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071699-exon-scaffold_63-1491911889:1235915..1236014 | TCONS_00071699-exon-scaffold_63-1491911889:1235915..1236014 | Clytia hemisphaerica | exon |
| TCONS_00071699-exon-scaffold_63-1510915933:1235915..1236014 | TCONS_00071699-exon-scaffold_63-1510915933:1235915..1236014 | Clytia hemisphaerica | exon |
| TCONS_00071699-exon-scaffold_63-1575043694:1235915..1236014 | TCONS_00071699-exon-scaffold_63-1575043694:1235915..1236014 | Clytia hemisphaerica | exon |
| TCONS_00071699-exon-scaffold_63-1491911889:1242714..1243023 | TCONS_00071699-exon-scaffold_63-1491911889:1242714..1243023 | Clytia hemisphaerica | exon |
| TCONS_00071699-exon-scaffold_63-1510915933:1242714..1243023 | TCONS_00071699-exon-scaffold_63-1510915933:1242714..1243023 | Clytia hemisphaerica | exon |
| TCONS_00071699-exon-scaffold_63-1575043694:1242714..1243023 | TCONS_00071699-exon-scaffold_63-1575043694:1242714..1243023 | Clytia hemisphaerica | exon |
| TCONS_00071699-exon-scaffold_63-1491911889:1243397..1243549 | TCONS_00071699-exon-scaffold_63-1491911889:1243397..1243549 | Clytia hemisphaerica | exon |
| TCONS_00071699-exon-scaffold_63-1510915933:1243397..1243549 | TCONS_00071699-exon-scaffold_63-1510915933:1243397..1243549 | Clytia hemisphaerica | exon |
| TCONS_00071699-exon-scaffold_63-1575043694:1243397..1243549 | TCONS_00071699-exon-scaffold_63-1575043694:1243397..1243549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:1235915..1243549 + |
Blast
BLAST of TCONS_00071699 vs. Swiss-Prot (Human)
Match: MRCKA (Serine/threonine-protein kinase MRCK alpha OS=Homo sapiens GN=CDC42BPA PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.313e-24 Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 2
Query: 242 AEKRLRALERLYLS-PNNIPREMFSAETLLDILIVLYDECNTTVMKRDKRVVDFLEVAKPVATRVKNLRLKREDFETLNVIGRGAFGEVRFV 514
E RLR LE+ L P + FS ETLLDILI LYDECN + ++R+K ++++LE AKP ++VK +RL REDFE L VIGRGAFGEV V
Sbjct: 3 GEVRLRQLEQFILDGPAQTNGQCFSVETLLDILICLYDECNNSPLRREKNILEYLEWAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVV 94
The following BLAST results are available for this feature:
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