XLOC_044538 (gene) - C. hemisphaerica

Overview
NameXLOC_044538
Unique NameXLOC_044538
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_63:1235852..1243549+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044538 ID=XLOC_044538|Name=XLOC_044538|organism=Clytia hemisphaerica|type=gene|length=7698bp|location=Sequence derived from alignment at scaffold_63:1235852..1243549+ (Clytia hemisphaerica)
ACTCAAGAAGGAGGAGTGAGCAGACGAAGCTGGAGTGAGCAAGCAACTTG
GTGATTCCGGCACAAAAATCAAAGGGGGAGAGAGAGAGGTAGTAAAAAGG
ACCATCCCCAAAATATAAAAGTGTATTATTTAATGGATGATATTAATTAT
GATTTAATTATAGGTAAATGGCTTTTAAAATCAACTAGTGGAATTCATTA
ATTTGTAGTTATAATATAAGTACATATAATaagtagattttttatttcaa
aaggtcattcctttttttaatttctcttggcttttgttttgatgattttt
gacaTATCtctctgtttgtttgtttgtttgatttgtttatttgtccTGAA
AATGAATGTTTACTTTTTGGGCTAGaaagtatataaaaaaaatttcaaag
tgcattaaaaataaaacttagcTAACCAGATGCCAGACAGGCGCGCAGCT
GATATGGCTGAACACAGTTGGTGAAATCAAAATTCTCAATGACTGGTGGT
CACatatagcctggagatccatgctatcaTTTCTTCTTGTTTGCGTTGAG
TTTAAATTTTCCATATCCTAATTGACGATTGAAAATGCAGGCAGTCaaat
tttgttcattctttcactggtcacactacGACcgacggcatggcccgaac
NCCACTGAAAGCATAcaatttcacttgctttcaccttcGCGCACAAATTC
Gcaactttaaaagtacagttttgaattagctttgataaaaaaaatatttt
ttcattggccagcgTGCNGATGTTcgttcgggcctgttcggaccatgctc
gggccacaaaaaagtattattgaatcagcccgaacattttgtttgaacca
tgttcgggccatgcagttagtcacactaggaaatctagctttcagaaaaa
acaaaggtccggcaaaatttctgggaGATGCCTATCCGGCANCTTCATCG
Cgtctttttaactttcgttttgggtatgaacaaactcaatgttggtgcaa
ATAGACAAAAACTCAACAAAGACGGGTGGGAAGGTGAGATCAACGCGATG
GCAGACATGATTGTAAAAAATTGTGCTATCGAAGATGTAcaggcatcgaa
ataagggatagaaagtgcatcgcaattttttgataagcatgattttgcat
cctaaaatggatcaattttcaatttttagcttgtaagtaatccaaaaacg
catcgcgaattgcgaaatgcgatatgctaattcgatccctgatgtaaaag
ttggtttcaaaaattttggccgataagggGGGGAGAGGGTCTGGagctta
tcggcccaatgccgataaaaaattcgaaagttttttgtcgaagacccctt
atcatcatccattgttaaatattttcattagacaaattcaaagttccaaa
taccagtttgattcacaaagttgtataacagtacaaaaaacaaTCCAGtt
gcttcgaataggagaagatcacgagaaaagggaacgggataaagaataaa
aagaagaccatattatgtaagattcaaatcattctttttaataattttcc
taacttaattggaaaatagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCCTACCTTATGGCCcaccaaaaaatcaatttagaCTACCTTAGACCT
TTGGACCACACTTTTTGGCCTCATAGTGCGTGAAGCCCTAGGCAACTGGC
TGACTTCTAATGAAGTGCTGGGAAAATTTTTCAGGGGTCTCCATGGGCTT
GCCATGGAGCTCAAAAGGGAACCCCCTTTTCAATATTCTGGGGACTTGGT
AAAGGATCTGCCCCAACTGAGGTTCCAGTTGTTCTTGACTAAATTTTCAC
TACACTGTGCTCCATGAAACTGGAAGTACCCAGGCAGTCCCCCTATGGCC
ATGGCTCCTTCGTAAAAGTGAAAGACACATCTGGACTTATTTCATACTTT
TCAGTCCCTAGTTAGTTTGTAGTTATTCTGACTTCCTGGGACTTTGAGag
ttattttctttgtttttcaactgTTTGAATGATTTTCTGAAAGATCGACA
CCAATGGGATTCAAacccactaaatgtaaagttccGATAATAAGAAACCC
AGAGCcaagccatttttcatgccctttaagcGTCCGGTTAtcttgaaatt
actaaaatattggtaaaaacagcctttttagtggaaaaacactggaaaaa
gtgccctttttggccaccaacggacgctaccttgcctttctaaaatatgg
cctgggAGCCCTGCCTATCCACTGCGCTACGGATTCATACCAGCAGAAGA
TCGTTTCTAACGGCTATTTATACTGTACGTACATACAAACTACAGAATTT
ACCATATTAAGAGAAAATtgcaaaagagtgcttgtttcgagctctaaccc
taaccctaactgaaaataacccaattcctagccaatctgatacataacca
tacccaaccctactaggttgcctgcaggtcctgacattGTCAGATCCGAA
AAATATAGATGTGTCTTTTGCTTTCATCATCAAGCATTATCCTGGCCAGA
CGATGCTTAACATCAATGGCATGGGTGCCTTAATCATATGTTTCTCTCTT
CCCTGtgtcaatcaaattactcaCAATTGAAACATGCGAAATCTATATGT
CAGGTGTATAGAAACTCAAAACttaattattttgtttgtttattttagtC
CAGTTAGAATGATAtaaatcaaataattttttagagttttaaggTGAGTC
ATAAGGTAGGCCATATGGCTGGGCCAATGAGGCCAATCTGTCTGAGTTAT
ATTATAATATTTTGAATTATATGCAAAATTACAGGAACAAAAAGGATGAC
CCATGGTATGGCCTGAACTTTTCAGGTAATGTTTATGCCAAAATAGCTAA
AAAGATTTCTGccacaaaattttgaatttttgcatAGGTCATCATGTTAA
GAGACTatttcaatttcacaattgTCAAGTGGCCTTAAAAATTTCTGTCC
TTACcatggttggatttagttggaaaatatgcaaaacatataccgtgaga
ttgagTAAttcttgcatcagtggaggctaacatacatagccctcaaatga
aaaacctggctggtcattaaaatacaaagttaaatcaaaacaaaatggta
gagtagagctgcgaccggagctgcgtagttgtattttaatgaccagacag
gtcattcatttgagggctatgcatgttagcctccactgatgcaagttacc
caatctcaggGTAGAACTTTACACACTCAGATTATAAAGACAACAAAGGA
TTTTTTAAATGTTATACTCGTTTTTGTATAACAATAAAATATGGAATTTT
ATACCTccatctaattctgacacccctCAAATTTTTACCTCAATTGCTGT
ATAAACATATTGATCATATATTTTTAAAGCACAAACGAGATATTATTTCt
gtagatcagattcttttaataaagacAATGTTTTTCTCGTACTATTTTTT
ACAatcgatgtttgtttatctttgttgaCTAGCACTATTGTTAAATATGT
CTGTAAAATATATAGGCTGAACAATAAATGAAAACTACCAATATCAAGGG
GATTCTCTGACTGGTAGAGagaaagaaatcatttttaatcagtgattctg
acATTTCTATTACAGTCTGACAGTTTACTGCTAGTTATTCTAAGTTCCAC
AGAGGATAAGAATTTACTACAAGTGGCTAGAAATTTGTTTTCCTGTCAGA
TTTAAACTTAACCTTAATGTTTTAAATATGAAAGTGTTATGATCACAGAA
AGTCAATGTTCTCACTGGACTACTGTACATCTCAATAAGACTTGAATAAC
TGAGAGTGATTTAGGCTATAATTGACCCCAAGAAGAATAGAAATCGCTTT
GAATAACTGAAGTTTTGAATAACTAAGAGTGTTTTTGCCTGAGTTGGGTT
AGAAGATCCAAGAGGGTCGCCATCTCACTTCAAATAATTGAATTATTCCA
ATCAGTACAGGTTCAAATAACAGGGAGTCCATTGTAAATATCTTTAAAGA
CTGGTGTTGAAATTAGATGAGGGGTGTCGACAAAAGAACATTTCACGgta
tataattcaaaaagaaagaacTGTACCTTATAATGCTGATATACCTTGTA
TGATTCCGTCATAGCATCTATCTATATGGTCTTTTAATGTTTATTAATGA
AAACTAAGtaagctgtttaaaaaaatcactgtAACCACTTTGCTAGAGAT
GGATATAAAGACTTTCCTTTTCAAGCAAGAAAATATTAGAACCCTCGTTT
TGATATACAAGAATCAGCGCAACAAGTTAATTTATAAATAAGTATTTAGC
TGCTATCAATTAGGGGGTTCAGAtctatgttttgatttgaaatatgATGT
CACTTTGCAGGGATATTCCCAAGAGAATATAATCTACCATCAGAATTATA
AGAAGTCTGACTGTGCCAGGTATTGATTCCATAATATCATCATGCATTAT
TACTTGTAAGTAAAAGTGTAAAATGTAGTATATTTTTAGCTTGTAATTTT
TGGTAGAGATCCTCAACTTAATGATTTTCTAGACCTCTTTTAAGCTCCAT
TGAAGAAATCTtgtggtattttttattttttaggttGGTTAGAGTTTGTA
AAAGTACAGTAACATACTTTTAGTCGTTACTTCATGTATGTAGTTATAaa
gaataaagaataaaaagcaTAAAATCATTCTAGCCATTTGGAATATAGGC
ATTGGGTAACCTGGGGAATATCCTTAAGTAATCACTTTCAAGCAGTAAGC
AAGAGACATTTACATCTAGAAACCATAGATTGATCAAAAGTTTGTCTGCT
TGCATAAGTTTTCTATATTCATTAGAATACTAACTTTTACAGCTTGTAAA
TGCTAAATGGCAAAGCTAAACCCAAATTTACTAATGGTTAACATCAATTT
ATCTACTTCCtccttttaatttgaaaaattataaatgAATTGTTAGCATC
ATTATGCAACCGTCTCTGGATGTTTTTTGTTGTCAAGTTGTATTCATTTT
AGTGAATGAATTTATCCTTGTTATGATTtgatttaaaatattgatgCATC
TCTATTTACCAGGCAACAATGACAATAACTTGAAAGTTATGCACAAAAGA
TGGAAAAACATTGCAAATACAGAACTAACAAAAACAAGATAATTATATTT
GATATGAGCTGATAGTACATTGAAACAAAAAGTATATTATGGAGAACGAT
TATGCGGAAAAGAGGCTTCGTGCCTTGGAAAGGCTATATCTTTCACCTAA
CAATATCCCTAGAGAAATGTTCAGTGCTGAAACCTTACTGGATATTCTCA
TTGTTTTGTATGACGAATGTAACACAACTGTCATGAAGAGGGATAAACGT
GTTGTTGACTTTCTGGAAGTTGGTAAATGAATTTTATTGTAATATGCTCA
AATGTCATTGAAACAATATGTGTTAATTTACAATATCCTGTAACTTTTGG
ATAGTGATGCTTTCATATTGATACTGANTTGTAATATGCTCAAATGTCAT
TGAAACAATATGTGTTAATTTACAATATCCTGTAACTTTTGGATAGTGAT
GCTTTCATATTGATACTGACTTGCTAACATATTCCCATAGGAAGGAAAAA
TCCCCTTTGATATTGCTATTTAAAAATTTCTCCTCCAGTCACCATAATAA
ATATCCATACTGTCACATTTTATAACTACATTTGAATTTTAGCTAANTAA
TAAATATCCATACTGTCACATTTTATAACTACATTTGAATTTTAGCTAAA
CCTGTTGCAACAAGAGTGAAGAATTTGAGATTGAAACGTGAGGACTTTGA
AACTCTCAATGTTATTGGAAGAGGAGCATTTGGAGAGGTAAGATTTGTCA
TCAACCTTTTGAGGATCTATATATCAAGATCAGATATATAGTGGTTTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00071698TCONS_00071698Clytia hemisphaericatranscript
TCONS_00071699TCONS_00071699Clytia hemisphaericatranscript
TCONS_00071700TCONS_00071700Clytia hemisphaericatranscript
TCONS_00071701TCONS_00071701Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00071699-proteinTCONS_00071699-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1235852..1243549 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.34	4.99	2.76	2.03	47.35	38.46	41.07	45.2	26.3	30.41	20.63	20.14	22.05	20.71	20.98	26.08	16.2	25.98	18.53	25.38	21.1	17.42	9.37	15.38	19.64	26.99	19.22	11.95	17.73	20.54