TCONS_00071701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071701
Unique NameTCONS_00071701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071701 ID=TCONS_00071701|Name=TCONS_00071701|organism=Clytia hemisphaerica|type=transcript|length=498bp
CCTGGGGAATATCCTTAAGTAATCACTTTCAAGCAGCAACAATGACAATA
ACTTGAAAGTTATGCACAAAAGATGGAAAAACATTGCAAATACAGAACTA
ACAAAAACAAGATAATTATATTTGATATGAGCTGATAGTACATTGAAACA
AAAAGTATATTATGGAGAACGATTATGCGGAAAAGAGGCTTCGTGCCTTG
GAAAGGCTATATCTTTCACCTAACAATATCCCTAGAGAAATGTTCAGTGC
TGAAACCTTACTGGATATTCTCATTGTTTTGTATGACGAATGTAACACAA
CTGTCATGAAGAGGGATAAACGTGTTGTTGACTTTCTGGAAGTTGCTAAA
CCTGTTGCAACAAGAGTGAAGAATTTGAGATTGAAACGTGAGGACTTTGA
AACTCTCAATGTTATTGGAAGAGGAGCATTTGGAGAGGTAAGATTTGTCA
TCAACCTTTTGAGGATCTATATATCAAGATCAGATATATAGTGGTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_63:1242361..1243549+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071701 ID=TCONS_00071701|Name=TCONS_00071701|organism=Clytia hemisphaerica|type=transcript|length=1189bp|location=Sequence derived from alignment at scaffold_63:1242361..1243549+ (Clytia hemisphaerica)
CCTGGGGAATATCCTTAAGTAATCACTTTCAAGCAGTAAGCAAGAGACAT
TTACATCTAGAAACCATAGATTGATCAAAAGTTTGTCTGCTTGCATAAGT
TTTCTATATTCATTAGAATACTAACTTTTACAGCTTGTAAATGCTAAATG
GCAAAGCTAAACCCAAATTTACTAATGGTTAACATCAATTTATCTACTTC
CtccttttaatttgaaaaattataaatgAATTGTTAGCATCATTATGCAA
CCGTCTCTGGATGTTTTTTGTTGTCAAGTTGTATTCATTTTAGTGAATGA
ATTTATCCTTGTTATGATTtgatttaaaatattgatgCATCTCTATTTAC
CAGGCAACAATGACAATAACTTGAAAGTTATGCACAAAAGATGGAAAAAC
ATTGCAAATACAGAACTAACAAAAACAAGATAATTATATTTGATATGAGC
TGATAGTACATTGAAACAAAAAGTATATTATGGAGAACGATTATGCGGAA
AAGAGGCTTCGTGCCTTGGAAAGGCTATATCTTTCACCTAACAATATCCC
TAGAGAAATGTTCAGTGCTGAAACCTTACTGGATATTCTCATTGTTTTGT
ATGACGAATGTAACACAACTGTCATGAAGAGGGATAAACGTGTTGTTGAC
TTTCTGGAAGTTGGTAAATGAATTTTATTGTAATATGCTCAAATGTCATT
GAAACAATATGTGTTAATTTACAATATCCTGTAACTTTTGGATAGTGATG
CTTTCATATTGATACTGANTTGTAATATGCTCAAATGTCATTGAAACAAT
ATGTGTTAATTTACAATATCCTGTAACTTTTGGATAGTGATGCTTTCATA
TTGATACTGACTTGCTAACATATTCCCATAGGAAGGAAAAATCCCCTTTG
ATATTGCTATTTAAAAATTTCTCCTCCAGTCACCATAATAAATATCCATA
CTGTCACATTTTATAACTACATTTGAATTTTAGCTAANTAATAAATATCC
ATACTGTCACATTTTATAACTACATTTGAATTTTAGCTAAACCTGTTGCA
ACAAGAGTGAAGAATTTGAGATTGAAACGTGAGGACTTTGAAACTCTCAA
TGTTATTGGAAGAGGAGCATTTGGAGAGGTAAGATTTGTCATCAACCTTT
TGAGGATCTATATATCAAGATCAGATATATAGTGGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044538XLOC_044538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071701-exon-scaffold_63-1491911889:1242361..1242395TCONS_00071701-exon-scaffold_63-1491911889:1242361..1242395Clytia hemisphaericaexon
TCONS_00071701-exon-scaffold_63-1510915933:1242361..1242395TCONS_00071701-exon-scaffold_63-1510915933:1242361..1242395Clytia hemisphaericaexon
TCONS_00071701-exon-scaffold_63-1575043694:1242361..1242395TCONS_00071701-exon-scaffold_63-1575043694:1242361..1242395Clytia hemisphaericaexon
TCONS_00071701-exon-scaffold_63-1491911889:1242714..1243023TCONS_00071701-exon-scaffold_63-1491911889:1242714..1243023Clytia hemisphaericaexon
TCONS_00071701-exon-scaffold_63-1510915933:1242714..1243023TCONS_00071701-exon-scaffold_63-1510915933:1242714..1243023Clytia hemisphaericaexon
TCONS_00071701-exon-scaffold_63-1575043694:1242714..1243023TCONS_00071701-exon-scaffold_63-1575043694:1242714..1243023Clytia hemisphaericaexon
TCONS_00071701-exon-scaffold_63-1491911889:1243397..1243549TCONS_00071701-exon-scaffold_63-1491911889:1243397..1243549Clytia hemisphaericaexon
TCONS_00071701-exon-scaffold_63-1510915933:1243397..1243549TCONS_00071701-exon-scaffold_63-1510915933:1243397..1243549Clytia hemisphaericaexon
TCONS_00071701-exon-scaffold_63-1575043694:1243397..1243549TCONS_00071701-exon-scaffold_63-1575043694:1243397..1243549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1242361..1243549 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49443	0	0	0	12.151	1.94678e-07	1.50947	3.84698e-05	0	0	1.4172e-05	0	0	0	0	0	0.0132109	0	0	0	0	0	0	0	14.6058	0.00170721	0	0.000110184	0	0
Blast
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BLAST of TCONS_00071701 vs. Swiss-Prot (Human)
Match: MRCKA (Serine/threonine-protein kinase MRCK alpha OS=Homo sapiens GN=CDC42BPA PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.111e-25
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 3 
Query:  177 AEKRLRALERLYLS-PNNIPREMFSAETLLDILIVLYDECNTTVMKRDKRVVDFLEVAKPVATRVKNLRLKREDFETLNVIGRGAFGEVRFV 449
             E RLR LE+  L  P     + FS ETLLDILI LYDECN + ++R+K ++++LE AKP  ++VK +RL REDFE L VIGRGAFGEV  V
Sbjct:    3 GEVRLRQLEQFILDGPAQTNGQCFSVETLLDILICLYDECNNSPLRREKNILEYLEWAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVV 94
The following BLAST results are available for this feature:
BLAST of TCONS_00071701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRCKA7.111e-2556.52Serine/threonine-protein kinase MRCK alpha OS=Homo... [more]
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