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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071698 ID=TCONS_00071698|Name=TCONS_00071698|organism=Clytia hemisphaerica|type=transcript|length=551bp
ACTCAAGAAGGAGGAGTGAGCAGACGAAGCTGGAGTGAGCAAGCAACTTG
GTGATTCCGGCACAAAAATCAAAGGGGGAGAGAGAGAGGCAACAATGACA
ATAACTTGAAAGTTATGCACAAAAGATGGAAAAACATTGCAAATACAGAA
CTAACAAAAACAAGATAATTATATTTGATATGAGCTGATAGTACATTGAA
ACAAAAAGTATATTATGGAGAACGATTATGCGGAAAAGAGGCTTCGTGCC
TTGGAAAGGCTATATCTTTCACCTAACAATATCCCTAGAGAAATGTTCAG
TGCTGAAACCTTACTGGATATTCTCATTGTTTTGTATGACGAATGTAACA
CAACTGTCATGAAGAGGGATAAACGTGTTGTTGACTTTCTGGAAGTTGCT
AAACCTGTTGCAACAAGAGTGAAGAATTTGAGATTGAAACGTGAGGACTT
TGAAACTCTCAATGTTATTGGAAGAGGAGCATTTGGAGAGGTAAGATTTG
TCATCAACCTTTTGAGGATCTATATATCAAGATCAGATATATAGTGGTTT
C Run BLAST on NCBI transcript from alignment at scaffold_63:1235852..1243549+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071698 ID=TCONS_00071698|Name=TCONS_00071698|organism=Clytia hemisphaerica|type=transcript|length=7698bp|location=Sequence derived from alignment at scaffold_63:1235852..1243549+ (Clytia hemisphaerica)
ACTCAAGAAGGAGGAGTGAGCAGACGAAGCTGGAGTGAGCAAGCAACTTG
GTGATTCCGGCACAAAAATCAAAGGGGGAGAGAGAGAGGTAGTAAAAAGG
ACCATCCCCAAAATATAAAAGTGTATTATTTAATGGATGATATTAATTAT
GATTTAATTATAGGTAAATGGCTTTTAAAATCAACTAGTGGAATTCATTA
ATTTGTAGTTATAATATAAGTACATATAATaagtagattttttatttcaa
aaggtcattcctttttttaatttctcttggcttttgttttgatgattttt
gacaTATCtctctgtttgtttgtttgtttgatttgtttatttgtccTGAA
AATGAATGTTTACTTTTTGGGCTAGaaagtatataaaaaaaatttcaaag
tgcattaaaaataaaacttagcTAACCAGATGCCAGACAGGCGCGCAGCT
GATATGGCTGAACACAGTTGGTGAAATCAAAATTCTCAATGACTGGTGGT
CACatatagcctggagatccatgctatcaTTTCTTCTTGTTTGCGTTGAG
TTTAAATTTTCCATATCCTAATTGACGATTGAAAATGCAGGCAGTCaaat
tttgttcattctttcactggtcacactacGACcgacggcatggcccgaac
NCCACTGAAAGCATAcaatttcacttgctttcaccttcGCGCACAAATTC
Gcaactttaaaagtacagttttgaattagctttgataaaaaaaatatttt
ttcattggccagcgTGCNGATGTTcgttcgggcctgttcggaccatgctc
gggccacaaaaaagtattattgaatcagcccgaacattttgtttgaacca
tgttcgggccatgcagttagtcacactaggaaatctagctttcagaaaaa
acaaaggtccggcaaaatttctgggaGATGCCTATCCGGCANCTTCATCG
Cgtctttttaactttcgttttgggtatgaacaaactcaatgttggtgcaa
ATAGACAAAAACTCAACAAAGACGGGTGGGAAGGTGAGATCAACGCGATG
GCAGACATGATTGTAAAAAATTGTGCTATCGAAGATGTAcaggcatcgaa
ataagggatagaaagtgcatcgcaattttttgataagcatgattttgcat
cctaaaatggatcaattttcaatttttagcttgtaagtaatccaaaaacg
catcgcgaattgcgaaatgcgatatgctaattcgatccctgatgtaaaag
ttggtttcaaaaattttggccgataagggGGGGAGAGGGTCTGGagctta
tcggcccaatgccgataaaaaattcgaaagttttttgtcgaagacccctt
atcatcatccattgttaaatattttcattagacaaattcaaagttccaaa
taccagtttgattcacaaagttgtataacagtacaaaaaacaaTCCAGtt
gcttcgaataggagaagatcacgagaaaagggaacgggataaagaataaa
aagaagaccatattatgtaagattcaaatcattctttttaataattttcc
taacttaattggaaaatagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCCTACCTTATGGCCcaccaaaaaatcaatttagaCTACCTTAGACCT
TTGGACCACACTTTTTGGCCTCATAGTGCGTGAAGCCCTAGGCAACTGGC
TGACTTCTAATGAAGTGCTGGGAAAATTTTTCAGGGGTCTCCATGGGCTT
GCCATGGAGCTCAAAAGGGAACCCCCTTTTCAATATTCTGGGGACTTGGT
AAAGGATCTGCCCCAACTGAGGTTCCAGTTGTTCTTGACTAAATTTTCAC
TACACTGTGCTCCATGAAACTGGAAGTACCCAGGCAGTCCCCCTATGGCC
ATGGCTCCTTCGTAAAAGTGAAAGACACATCTGGACTTATTTCATACTTT
TCAGTCCCTAGTTAGTTTGTAGTTATTCTGACTTCCTGGGACTTTGAGag
ttattttctttgtttttcaactgTTTGAATGATTTTCTGAAAGATCGACA
CCAATGGGATTCAAacccactaaatgtaaagttccGATAATAAGAAACCC
AGAGCcaagccatttttcatgccctttaagcGTCCGGTTAtcttgaaatt
actaaaatattggtaaaaacagcctttttagtggaaaaacactggaaaaa
gtgccctttttggccaccaacggacgctaccttgcctttctaaaatatgg
cctgggAGCCCTGCCTATCCACTGCGCTACGGATTCATACCAGCAGAAGA
TCGTTTCTAACGGCTATTTATACTGTACGTACATACAAACTACAGAATTT
ACCATATTAAGAGAAAATtgcaaaagagtgcttgtttcgagctctaaccc
taaccctaactgaaaataacccaattcctagccaatctgatacataacca
tacccaaccctactaggttgcctgcaggtcctgacattGTCAGATCCGAA
AAATATAGATGTGTCTTTTGCTTTCATCATCAAGCATTATCCTGGCCAGA
CGATGCTTAACATCAATGGCATGGGTGCCTTAATCATATGTTTCTCTCTT
CCCTGtgtcaatcaaattactcaCAATTGAAACATGCGAAATCTATATGT
CAGGTGTATAGAAACTCAAAACttaattattttgtttgtttattttagtC
CAGTTAGAATGATAtaaatcaaataattttttagagttttaaggTGAGTC
ATAAGGTAGGCCATATGGCTGGGCCAATGAGGCCAATCTGTCTGAGTTAT
ATTATAATATTTTGAATTATATGCAAAATTACAGGAACAAAAAGGATGAC
CCATGGTATGGCCTGAACTTTTCAGGTAATGTTTATGCCAAAATAGCTAA
AAAGATTTCTGccacaaaattttgaatttttgcatAGGTCATCATGTTAA
GAGACTatttcaatttcacaattgTCAAGTGGCCTTAAAAATTTCTGTCC
TTACcatggttggatttagttggaaaatatgcaaaacatataccgtgaga
ttgagTAAttcttgcatcagtggaggctaacatacatagccctcaaatga
aaaacctggctggtcattaaaatacaaagttaaatcaaaacaaaatggta
gagtagagctgcgaccggagctgcgtagttgtattttaatgaccagacag
gtcattcatttgagggctatgcatgttagcctccactgatgcaagttacc
caatctcaggGTAGAACTTTACACACTCAGATTATAAAGACAACAAAGGA
TTTTTTAAATGTTATACTCGTTTTTGTATAACAATAAAATATGGAATTTT
ATACCTccatctaattctgacacccctCAAATTTTTACCTCAATTGCTGT
ATAAACATATTGATCATATATTTTTAAAGCACAAACGAGATATTATTTCt
gtagatcagattcttttaataaagacAATGTTTTTCTCGTACTATTTTTT
ACAatcgatgtttgtttatctttgttgaCTAGCACTATTGTTAAATATGT
CTGTAAAATATATAGGCTGAACAATAAATGAAAACTACCAATATCAAGGG
GATTCTCTGACTGGTAGAGagaaagaaatcatttttaatcagtgattctg
acATTTCTATTACAGTCTGACAGTTTACTGCTAGTTATTCTAAGTTCCAC
AGAGGATAAGAATTTACTACAAGTGGCTAGAAATTTGTTTTCCTGTCAGA
TTTAAACTTAACCTTAATGTTTTAAATATGAAAGTGTTATGATCACAGAA
AGTCAATGTTCTCACTGGACTACTGTACATCTCAATAAGACTTGAATAAC
TGAGAGTGATTTAGGCTATAATTGACCCCAAGAAGAATAGAAATCGCTTT
GAATAACTGAAGTTTTGAATAACTAAGAGTGTTTTTGCCTGAGTTGGGTT
AGAAGATCCAAGAGGGTCGCCATCTCACTTCAAATAATTGAATTATTCCA
ATCAGTACAGGTTCAAATAACAGGGAGTCCATTGTAAATATCTTTAAAGA
CTGGTGTTGAAATTAGATGAGGGGTGTCGACAAAAGAACATTTCACGgta
tataattcaaaaagaaagaacTGTACCTTATAATGCTGATATACCTTGTA
TGATTCCGTCATAGCATCTATCTATATGGTCTTTTAATGTTTATTAATGA
AAACTAAGtaagctgtttaaaaaaatcactgtAACCACTTTGCTAGAGAT
GGATATAAAGACTTTCCTTTTCAAGCAAGAAAATATTAGAACCCTCGTTT
TGATATACAAGAATCAGCGCAACAAGTTAATTTATAAATAAGTATTTAGC
TGCTATCAATTAGGGGGTTCAGAtctatgttttgatttgaaatatgATGT
CACTTTGCAGGGATATTCCCAAGAGAATATAATCTACCATCAGAATTATA
AGAAGTCTGACTGTGCCAGGTATTGATTCCATAATATCATCATGCATTAT
TACTTGTAAGTAAAAGTGTAAAATGTAGTATATTTTTAGCTTGTAATTTT
TGGTAGAGATCCTCAACTTAATGATTTTCTAGACCTCTTTTAAGCTCCAT
TGAAGAAATCTtgtggtattttttattttttaggttGGTTAGAGTTTGTA
AAAGTACAGTAACATACTTTTAGTCGTTACTTCATGTATGTAGTTATAaa
gaataaagaataaaaagcaTAAAATCATTCTAGCCATTTGGAATATAGGC
ATTGGGTAACCTGGGGAATATCCTTAAGTAATCACTTTCAAGCAGTAAGC
AAGAGACATTTACATCTAGAAACCATAGATTGATCAAAAGTTTGTCTGCT
TGCATAAGTTTTCTATATTCATTAGAATACTAACTTTTACAGCTTGTAAA
TGCTAAATGGCAAAGCTAAACCCAAATTTACTAATGGTTAACATCAATTT
ATCTACTTCCtccttttaatttgaaaaattataaatgAATTGTTAGCATC
ATTATGCAACCGTCTCTGGATGTTTTTTGTTGTCAAGTTGTATTCATTTT
AGTGAATGAATTTATCCTTGTTATGATTtgatttaaaatattgatgCATC
TCTATTTACCAGGCAACAATGACAATAACTTGAAAGTTATGCACAAAAGA
TGGAAAAACATTGCAAATACAGAACTAACAAAAACAAGATAATTATATTT
GATATGAGCTGATAGTACATTGAAACAAAAAGTATATTATGGAGAACGAT
TATGCGGAAAAGAGGCTTCGTGCCTTGGAAAGGCTATATCTTTCACCTAA
CAATATCCCTAGAGAAATGTTCAGTGCTGAAACCTTACTGGATATTCTCA
TTGTTTTGTATGACGAATGTAACACAACTGTCATGAAGAGGGATAAACGT
GTTGTTGACTTTCTGGAAGTTGGTAAATGAATTTTATTGTAATATGCTCA
AATGTCATTGAAACAATATGTGTTAATTTACAATATCCTGTAACTTTTGG
ATAGTGATGCTTTCATATTGATACTGANTTGTAATATGCTCAAATGTCAT
TGAAACAATATGTGTTAATTTACAATATCCTGTAACTTTTGGATAGTGAT
GCTTTCATATTGATACTGACTTGCTAACATATTCCCATAGGAAGGAAAAA
TCCCCTTTGATATTGCTATTTAAAAATTTCTCCTCCAGTCACCATAATAA
ATATCCATACTGTCACATTTTATAACTACATTTGAATTTTAGCTAANTAA
TAAATATCCATACTGTCACATTTTATAACTACATTTGAATTTTAGCTAAA
CCTGTTGCAACAAGAGTGAAGAATTTGAGATTGAAACGTGAGGACTTTGA
AACTCTCAATGTTATTGGAAGAGGAGCATTTGGAGAGGTAAGATTTGTCA
TCAACCTTTTGAGGATCTATATATCAAGATCAGATATATAGTGGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071698-exon-scaffold_63-1491911889:1235852..1235939 | TCONS_00071698-exon-scaffold_63-1491911889:1235852..1235939 | Clytia hemisphaerica | exon |
| TCONS_00071698-exon-scaffold_63-1510915933:1235852..1235939 | TCONS_00071698-exon-scaffold_63-1510915933:1235852..1235939 | Clytia hemisphaerica | exon |
| TCONS_00071698-exon-scaffold_63-1575043694:1235852..1235939 | TCONS_00071698-exon-scaffold_63-1575043694:1235852..1235939 | Clytia hemisphaerica | exon |
| TCONS_00071698-exon-scaffold_63-1491911889:1242714..1243023 | TCONS_00071698-exon-scaffold_63-1491911889:1242714..1243023 | Clytia hemisphaerica | exon |
| TCONS_00071698-exon-scaffold_63-1510915933:1242714..1243023 | TCONS_00071698-exon-scaffold_63-1510915933:1242714..1243023 | Clytia hemisphaerica | exon |
| TCONS_00071698-exon-scaffold_63-1575043694:1242714..1243023 | TCONS_00071698-exon-scaffold_63-1575043694:1242714..1243023 | Clytia hemisphaerica | exon |
| TCONS_00071698-exon-scaffold_63-1491911889:1243397..1243549 | TCONS_00071698-exon-scaffold_63-1491911889:1243397..1243549 | Clytia hemisphaerica | exon |
| TCONS_00071698-exon-scaffold_63-1510915933:1243397..1243549 | TCONS_00071698-exon-scaffold_63-1510915933:1243397..1243549 | Clytia hemisphaerica | exon |
| TCONS_00071698-exon-scaffold_63-1575043694:1243397..1243549 | TCONS_00071698-exon-scaffold_63-1575043694:1243397..1243549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:1235852..1243549 + |
Blast
BLAST of TCONS_00071698 vs. Swiss-Prot (Human)
Match: MRCKA (Serine/threonine-protein kinase MRCK alpha OS=Homo sapiens GN=CDC42BPA PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.179e-24 Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 2
Query: 230 AEKRLRALERLYLS-PNNIPREMFSAETLLDILIVLYDECNTTVMKRDKRVVDFLEVAKPVATRVKNLRLKREDFETLNVIGRGAFGEVRFV 502
E RLR LE+ L P + FS ETLLDILI LYDECN + ++R+K ++++LE AKP ++VK +RL REDFE L VIGRGAFGEV V
Sbjct: 3 GEVRLRQLEQFILDGPAQTNGQCFSVETLLDILICLYDECNNSPLRREKNILEYLEWAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVV 94
The following BLAST results are available for this feature:
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