TCONS_00071693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071693
Unique NameTCONS_00071693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071693 ID=TCONS_00071693|Name=TCONS_00071693|organism=Clytia hemisphaerica|type=transcript|length=1817bp
TAACACAAAGAagtatgaatttgaaaattctaaagTCAAATGATGTCTAT
GTTCTCACGATTTGTTTGATTCTTGTGGTTGGTTCTGGGGCCAATTTCTC
GAATGGTACTGGTAACATTACCAGAGGCAAGTCACTAACGGATATTTACG
ACAAAATATTCGGAGAATCAGCCAATTATAAACCAGAAGTCAAAGCATCG
CAGGAGGAAGGACGAAGACGACTTGATGTCATATTTGATATCAACATTCG
TACAATACTCGGACTGgAAGTCAAAACTCAAACCTTCCATCTCACAGCTG
TTATACACATGaGATGGAAAGACAAAAGATTGACTTGGAACGAAAGTGAA
TTTGATGGTATCGATACGTTAAACGTTGGGAATTCCATTGTCTGGACTCC
TGACATCATGCTTTATAACGAcGTGAACGAGGAAACGTTATCACACACAG
AGATATTCCGTTCCAAAGTGTTGATTCAAAATGACGGTACAGTAATATGG
ACGAACCCGGTGACTATCAAATCCACGTGTCAAGTTGATGTCACGTGGTT
CCCTGTTGATTATCAAGTTTGTAATTTGACGTTTGGTTCATGGTCCTATT
CTGAGCAAGTCATGAATATAAAGTTtcgaaataaaaagaaagatcGCGAC
ATGATTAAGTCAGattttcacaTTCCAAGTGGCGAATGGTCGATGGagga
aatcaagtttttcgaagaagaaaaaacatttgaatGCTGCAAAAATCCTT
TCTCAGTCATTACATTACAAGTCTTCATGAAGCGTTATCCAGATTTTTAC
TATCTCTATGTATTTCTCCCCTTTATCTCACAAATCATTCTATTCCTGCT
GATTTTTCACATCCATCCTGACCAAGGAGATCGTTTGAGTTACGGAGTTG
CCCTGCTGTTAAATATGACTATGTACATGATTTTCCTATCTGATAAACTA
CCAGAGAAATCAGACAGTGTGCCATACGTTGGAGCTCTGTTTGTCACATT
CTTCTTCCTACTCTCTATTGCATTGGTTTTATCAGCTGTAACGATGCATT
GCTCGACACGCGATACACCTTTACCAATGATTGCTCACAAAGTTAAAGCA
ATTACTAATCGAATATGGCCTTGTGGAAAGAAATCAAATGCTAGATCCAA
ATCGAGTAAATACGGATCTTACAACATGAAACTCCGAAAACCAAAATCAG
AAACAGATTCCAATTTCAATGATCCTCGTGGTCCCAAGGGTGATGCAAAT
CGAAAAGTGTCGGATTTGATAGAATCGGATTCTGAGTCAAGCTCAGTTGA
AATTGCCCGTAACGACAAATATGAGAATCGTTTCGAAGGATGGTTCGAAT
TCATGAGATTTACGGAAAAATGGCTAACAGTCATCTTTGCATTTTTGCTG
GTTGTTATACCAATAATAATTGCCGGCTCTGTTAACACACGAATGACTCA
ACCTGATTACTGATAAATTTAAAACTGTATTATATTTTACTATGCGTCAT
CAATGAAACAATATTGGAAGAATTTGCCCAGAAGGTCAATTTAATGATAG
AATAAATGTATACCCAGCTGgcgcacaacgttgtttcgacgttgatctag
aaacaacgttgtgtgccagctggttaAGACccaaactttcttttaattct
TGTAGAAGATGTAGTATTTCTTTAGGATTCAGATTTGCTCTctggaaaaa
tgtaaaaattaagGAGGCGAATTTTCGGGATGCGTAAGGCGTTTTTCGTA
GGGGTAAGTTTCCTGTAACCATTTATTTAATGATGTAAATAGTTTAATTT
CAAAtgtctaaaatgaa
Run BLAST on NCBI

protein sequence of TCONS_00071693-protein

>TCONS_00071693-protein ID=TCONS_00071693-protein|Name=TCONS_00071693-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
TQRSMNLKILKSNDVYVLTICLILVVGSGANFSNGTGNITRGKSLTDIYD
KIFGESANYKPEVKASQEEGRRRLDVIFDINIRTILGLEVKTQTFHLTAV
IHMRWKDKRLTWNESEFDGIDTLNVGNSIVWTPDIMLYNDVNEETLSHTE
IFRSKVLIQNDGTVIWTNPVTIKSTCQVDVTWFPVDYQVCNLTFGSWSYS
EQVMNIKFRNKKKDRDMIKSDFHIPSGEWSMEEIKFFEEEKTFECCKNPF
SVITLQVFMKRYPDFYYLYVFLPFISQIILFLLIFHIHPDQGDRLSYGVA
LLLNMTMYMIFLSDKLPEKSDSVPYVGALFVTFFFLLSIALVLSAVTMHC
STRDTPLPMIAHKVKAITNRIWPCGKKSNARSKSSKYGSYNMKLRKPKSE
TDSNFNDPRGPKGDANRKVSDLIESDSESSSVEIARNDKYENRFEGWFEF
MRFTEKWLTVIFAFLLVVIPIIIAGSVNTRMTQPDY
Run BLAST on NCBI

transcript from alignment at scaffold_63:1161701..1167377+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071693 ID=TCONS_00071693|Name=TCONS_00071693|organism=Clytia hemisphaerica|type=transcript|length=5677bp|location=Sequence derived from alignment at scaffold_63:1161701..1167377+ (Clytia hemisphaerica)
TAACACAAAGAagtatgaatttgaaaattctaaagTCAAATGATGTCTAT
GTTCTCACGATTTGTTTGATTCTTGTGGTTGGTTCTGGGGCCAATTTCTC
GAATGGTACTGGTAACATTACCAGAGGTAAGtaaatattttcaacatttt
atgattacacgtttttttataagaacacccaaaatttttgaagccttcag
atgttcttaacatgtccttattttccccatattttgagtatttctatcca
ttttcctaagaaaataggtgttttagagtccccaaagccttaaaatgttc
ttaactttttggccatcgaagcattgtgtccttatatagtttgttcttat
ataaagaACACGTAACAATTCTATCAAGGGGCGATTTCAAGCGATTTACC
TTAGGTGCGGCTTTTAAGGGTACGTTTTCAAGGGTTCTCAAATTGCattg
taccgtcaactgctctaacttgggacgattggtcgaaacatgggactgct
tgatatctggcctgtattttcacttacttttaaatctctttgacaacaaa
tttgttttgatagctccaccaagtttatcaatcatacttcttcgttcctc
ttagagtgcacagacactcgcgtgtgtttcactacggatttttttttcat
atttcgatttaaaagcgtactcggtgcgaaagagaaatcgtgtatttttt
aatacgccgttcatttactcaaatcaaatgactttggaggttaaGTGAAA
ttgtggccaaattgccgtcccatgttttgtcagatagtcccaagttagag
cagttgacggtaagggTCGGAATAAGAGAAAATGCGCATCCTAAAGGTGT
AAAGAATGAGAAGAACGAAATATTTAAGGCGAAATTCGGGAAAAACCTga
ccatttttttctttaaaatgagcaaaagttttaaagaaaatgcACCTTAA
GGGtcattttcttccaaatttactcaaatttacaTGCATTGGACGGCATG
AGGCCATGCAAAAATCAacattgaataattaaaaataatatttaaacaAT
CAGCCAGTGAAACAAAACTCTTAGTCTCTTATTTTCAAAGAGAACCTTTT
TGGGTCTTTTTCGCGGAACGGAAAATTAAGGACTGTTacaaaagaattca
aatccccaggcATAAaagatatgggaatatcaatccccatcgagtttgtG
TCCATTAATTTTATACCCACTGGTAGAAAAAACCctatcgggtctgtgag
aagggggtgtttttgaGCTCATATCACTGAATACTTTCCATTTCATTTCA
GGCAAGTCACTAACGGATATTTACGACAAAATATTCGGAGAATCAGCCAA
TTATAAACCAGAAGTCAAAGCATCGCAGGAGGAAGGACGAAGACGACTTG
ATGTCATATTTGATATCAACATTCGTACAATACTCGGACTGGTAATGGCT
ATTTGTATTATTTCTGTATCTCAGTCTGATAAATAATTGCTCAAAAGAGG
TCCTAACTATTAAAAAATAGTGCGTCCTAGAAGAAGCATCTAGAAAAGCC
CgagcattttttgatgacgCGCAGATTTCAACAATACAACCCTAGGCTTT
TGATGGTTAAATCACAAGATATCTGCTTGGTTTTAAGATCAATGATTTTA
CATAGAGGTAAAACTTGGGCCGAATGTTAATAATTTTACAATCTGCATAC
GTTGCAACcgaattctttgaatttttttttgtaggAAGTCAAAACTCAAA
CCTTCCATCTCACAGCTGTTATACACATGGTAAGAAAATCTTAGTCATCT
AATATAGGACTTTTAGTCAAAACCTTTAGACAGTTGTTAGATATTTCTGA
GCTGAacaggaaaatttcaactttttgtgcCTCAAATTGACAATGACACC
AGTCCCAAATAGGgtaggaaaattgacaaaatttccctcctttttagtcc
catTAAGACACTGAGGGTCAAAAGTCGGGTGGCACATGCCCGTCATATTG
CAAACttaatgccccccccccccaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNcactgtaagggtgcaattttaaaagcca
atttttggcccgcacataccgtcagtccgcaaacccagtgcccctcCCCC
CGGGGTTTGTGGTACTGAAATCAACCCTAAGATCCTGGCTTAAGTATATT
TCTTTATAATGCTAGTATATCTACATCAATatgattaaaatttttagaGA
TGGAAAGACAAAAGATTGACTTGGAACGAAAGTGAATTTGATGGTATCGA
TACGTTAAACGTTGGGAATTCCATTGTCTGGACTCCTGACATCATGCTTT
ATAACGAGTAAGAGAATTGTTTGGTGTTTTACTGGTGATCAAACATTCTG
TTTTCTGCATTATCGACTATTCTGTTATAgaagaataaaaatataataCA
CCTTGGTCTTGTAGTATTGATAATGAAACCCAGATTATAAACTGGACAGG
GCTGCACCCCGGgaaagtacactttttttataaaagagactaaaaaactt
taaaaaatactcAACTTTTGCCAAAACTTTAgaataaaataagaacaatg
cAAAAGATTCTGATTGTAAGTGAATGCCAATAAGTGAATAAAGTAAAGAT
ACGAAGAACAGTCTTAAAATcacagaaaataaaattttttttcacgaatT
GCAGCAAAAACTCCGGTGTCTCCGTAAACACATTATACGAATCATGAATA
AATATGTTTTCCTAAATCTTGATccatctttctttcttttagcGTGAACG
AGGAAACGTTATCACACACAGAGATATTCCGTTCCAAAGTGTTGATTCAA
AATGACGGTACAGTAATATGGACGAACCCGGTGACTATCAAATCCACGTG
TCAAGTTGATGTCACGTGGTTCCCTGTTGATTATCAAGTAATGAGTTATT
GATTTTTAAAGGAAAGGGTCTGTTGCTGagggaaaaggaaaaaaataatt
ttgttgcCAGAACTTACAAAACATGGGAAAACAGGCATACTGGAATGGGA
TGAAAGTTCCAAAGTACCCTCTACGTGGGACCAAGGAATTCCTTGGTGGG
ACTGAGctaaattttatgttttgcgACACCACACCTGTCACAGGTGGAGG
TGAAAAATAAACACATCCCCGAACCTCTTTATATCCAAGTCAATCTCCAG
AGCTAAgataatattttcataaaatcttACACTTATATTTCCCTTTTGTA
GGTTTGTAATTTGACGTTTGGTTCATGGTCCTATTCTGAGCAAGTCATGA
ATATAAAGTTtcgaaataaaaagaaagatcGCGACATGATTAAGTCAGGT
AAATCTTTAAAAACCTTCAAATGTTCCTTGTTACACCTGCTCTGTACCAg
cgtgtatctcacgattatcgtagcgtagttcactctgtgcgcattgtctg
tttcataaaaattttcccgaacggagacctctgcgatgaagtataatttt
aaaataaagtgGCAGCCAAAAAGCTACGACAATTGTAAACAAAGAGATGG
GGTCCATTATTAAGGATCACTTTCTAAGCATGTtttggctgcttttttaa
tgtttttgagccaaactaaaagctgataattattgaaaattattttccca
TTACCCtatattttaccattttacctatactccatcgcagcggttggttt
gaaaaatctcaaacaagaaaagacaatgaaaacagaccctctacggcaat
gaattttaaaatcttaaatctttaaaaagcttaaaaaataaTTGGGAATG
GTTTTGCAGTGCACTTTTTTACATTgcatttcgaatggggatgagaTCAA
ATTTTCCTGGTTGGGCTCAAATGGAAGAGAATTTTCCCACTAGGGTTGAA
CTTTTGGGTAAATTTTCAAGTGAGGCTGGGGTTCCAgcgtgacacagggg
tgtcttgGTTGAAATAGGTTACTGAACTGAAATGCTGGAATCTCCATTCC
CAGCTTGTAAACAATATTGATTCAACGTTTATCTATCACATGTATCTGTA
TCacaacgtctatataacgttatatgaacgttgaaacaacgttgtgttcc
AGTTATTTTGGCAACTTCCCTTTCCATAGGAGAACGCATGCTCAAAGAAA
ATCAAGatgcaaaattttgatttttaaaacagaTTTGAAATATCACAACT
GATGTTTaccttttcatttttagattttcacaTTCCAAGTGGCGAATGGT
CGATGGaggaaatcaagtttttcgaagaagaaaaaacatttgaatGCTGC
AAAAATCCTTTCTCAGTCATTACATTACAAGTCTTCATGAAGCGTTATCC
AGATTTTTACTATCTCTATGTATTTCTCCCCTTTATCTCACAAATCATTC
TATTCCTGCTGATTTTTCACATCCATCCTGACCAAGGAGATCGTTTGAGT
TACGGAGTTGCCCTGCTGTTAAATATGACTATGTACATGATTTTCCTATC
TGATAAACTACCAGAGAAATCAGACAGTGTGCCATACGTTGGAGCTCTGT
TTGTCACATTCTTCTTCCTACTCTCTATTGCATTGGTTTTATCAGCTGTA
ACGATGCATTGCTCGACACGCGATACACCTTTACCAATGATTGCTCACAA
AGTTAAAGCAATTACTAATCGAATATGGCCTTGTGGAAAGAAATCAAATG
CTAGATCCAAATCGAGTAAATACGGATCTTACAACATGAAACTCCGAAAA
CCAAAATCAGAAACAGATTCCAATTTCAATGATCCTCGTGGTCCCAAGGG
TGATGCAAATCGAAAAGTGTCGGATTTGATAGAATCGGATTCTGAGTCAA
GCTCAGTTGAAATTGCCCGTAACGACAAATATGAGAATCGTTTCGAAGGA
TGGTTCGAATTCATGAGATTTACGGAAAAATGGCTAACAGTCATCTTTGC
ATTTTTGCTGGTTGTTATACCAATAATAATTGCCGGCTCTGTTAACACAC
GAATGACTCAACCTGATTACTGATAAATTTAAAACTGTATTATATTTTAC
TATGCGTCATCAATGAAACAATATTGGAAGAATTTGCCCAGAAGGTCAAT
TTAATGATAGAATAAATGTATACCCAGCTGgcgcacaacgttgtttcgac
gttgatctagaaacaacgttgtgtgccagctggttaAGACccaaactttc
ttttaattctTGTAGAAGATGTAGTATTTCTTTAGGATTCAGATTTGCTC
TctggaaaaatgtaaaaattaagGAGGCGAATTTTCGGGATGCGTAAGGC
GTTTTTCGTAGGGGTAAGTTTCCTGTAACCATTTATTTAATGATGTAAAT
AGTTTAATTTCAAAtgtctaaaatgaa

Coding sequence (CDS) from alignment at scaffold_63:1161701..1167377+

>TCONS_00071693 ID=TCONS_00071693|Name=TCONS_00071693|organism=Clytia hemisphaerica|type=CDS|length=10227bp|location=Sequence derived from alignment at scaffold_63:1161701..1167377+ (Clytia hemisphaerica)
ACACAAAGAagtatgaatttgaaaattctaaagTCAAATGATGTCTATGT
TCTCACGATTTGTTTGATTCTTGTGGTTGGTTCTGGGGCCAATTTCTCGA
ATGGTACTGGTAACATTACCAGAGGCAAGTCACTAACGGATATTTACGAC
AAAATATTCGGAGAATCAGCCAATTATAAACCAGAAGTCAAAGCATCGCA
GGAGGAAGGACGAAGACGACTTGATGTCATATTTGATATCAACATTCGTA
CAATACTCGGACTGgAAGTCAAAACTCAAACCTTCCATCTCACAGCTGTT
ATACACATGaGATGGAAAGACAAAAGATTGACTTGGAACGAAAGTGAATT
TGATGGTATCGATACGTTAAACGTTGGGAATTCCATTGTCTGGACTCCTG
ACATCATGCTTTATAACGAcGTGAACGAGGAAACGTTATCACACACAGAG
ATATTCCGTTCCAAAGTGTTGATTCAAAATGACGGTACAGTAATATGGAC
GAACCCGGTGACTATCAAATCCACGTGTCAAGTTGATGTCACGTGGTTCC
CTGTTGATTATCAAGTTTGTAATTTGACGTTTGGTTCATGGTCCTATTCT
GAGCAAGTCATGAATATAAAGTTtcgaaataaaaagaaagatcGCGACAT
GATTAAGTCAGattttcacaTTCCAAGTGGCGAATGGTCGATGGaggaaa
tcaagtttttcgaagaagaaaaaacatttgaatGCTGCAAAAATCCTTTC
TCAGTCATTACATTACAAGTCTTCATGAAGCGTTATCCAGATTTTTACTA
TCTCTATGTATTTCTCCCCTTTATCTCACAAATCATTCTATTCCTGCTGA
TTTTTCACATCCATCCTGACCAAGGAGATCGTTTGAGTTACGGAGTTGCC
CTGCTGTTAAATATGACTATGTACATGATTTTCCTATCTGATAAACTACC
AGAGAAATCAGACAGTGTGCCATACGTTGGAGCTCTGTTTGTCACATTCT
TCTTCCTACTCTCTATTGCATTGGTTTTATCAGCTGTAACGATGCATTGC
TCGACACGCGATACACCTTTACCAATGATTGCTCACAAAGTTAAAGCAAT
TACTAATCGAATATGGCCTTGTGGAAAGAAATCAAATGCTAGATCCAAAT
CGAGTAAATACGGATCTTACAACATGAAACTCCGAAAACCAAAATCAGAA
ACAGATTCCAATTTCAATGATCCTCGTGGTCCCAAGGGTGATGCAAATCG
AAAAGTGTCGGATTTGATAGAATCGGATTCTGAGTCAAGCTCAGTTGAAA
TTGCCCGTAACGACAAATATGAGAATCGTTTCGAAGGATGGTTCGAATTC
ATGAGATTTACGGAAAAATGGCTAACAGTCATCTTTGCATTTTTGCTGGT
TGTTATACCAATAATAATTGCCGGCTCTGTTAACACACGAATGACTCAAC
CTGATTACTGAACACAAAGAagtatgaatttgaaaattctaaagTCAAAT
GATGTCTATGTTCTCACGATTTGTTTGATTCTTGTGGTTGGTTCTGGGGC
CAATTTCTCGAATGGTACTGGTAACATTACCAGAGGCAAGTCACTAACGG
ATATTTACGACAAAATATTCGGAGAATCAGCCAATTATAAACCAGAAGTC
AAAGCATCGCAGGAGGAAGGACGAAGACGACTTGATGTCATATTTGATAT
CAACATTCGTACAATACTCGGACTGgAAGTCAAAACTCAAACCTTCCATC
TCACAGCTGTTATACACATGaGATGGAAAGACAAAAGATTGACTTGGAAC
GAAAGTGAATTTGATGGTATCGATACGTTAAACGTTGGGAATTCCATTGT
CTGGACTCCTGACATCATGCTTTATAACGAcGTGAACGAGGAAACGTTAT
CACACACAGAGATATTCCGTTCCAAAGTGTTGATTCAAAATGACGGTACA
GTAATATGGACGAACCCGGTGACTATCAAATCCACGTGTCAAGTTGATGT
CACGTGGTTCCCTGTTGATTATCAAGTTTGTAATTTGACGTTTGGTTCAT
GGTCCTATTCTGAGCAAGTCATGAATATAAAGTTtcgaaataaaaagaaa
gatcGCGACATGATTAAGTCAGattttcacaTTCCAAGTGGCGAATGGTC
GATGGaggaaatcaagtttttcgaagaagaaaaaacatttgaatGCTGCA
AAAATCCTTTCTCAGTCATTACATTACAAGTCTTCATGAAGCGTTATCCA
GATTTTTACTATCTCTATGTATTTCTCCCCTTTATCTCACAAATCATTCT
ATTCCTGCTGATTTTTCACATCCATCCTGACCAAGGAGATCGTTTGAGTT
ACGGAGTTGCCCTGCTGTTAAATATGACTATGTACATGATTTTCCTATCT
GATAAACTACCAGAGAAATCAGACAGTGTGCCATACGTTGGAGCTCTGTT
TGTCACATTCTTCTTCCTACTCTCTATTGCATTGGTTTTATCAGCTGTAA
CGATGCATTGCTCGACACGCGATACACCTTTACCAATGATTGCTCACAAA
GTTAAAGCAATTACTAATCGAATATGGCCTTGTGGAAAGAAATCAAATGC
TAGATCCAAATCGAGTAAATACGGATCTTACAACATGAAACTCCGAAAAC
CAAAATCAGAAACAGATTCCAATTTCAATGATCCTCGTGGTCCCAAGGGT
GATGCAAATCGAAAAGTGTCGGATTTGATAGAATCGGATTCTGAGTCAAG
CTCAGTTGAAATTGCCCGTAACGACAAATATGAGAATCGTTTCGAAGGAT
GGTTCGAATTCATGAGATTTACGGAAAAATGGCTAACAGTCATCTTTGCA
TTTTTGCTGGTTGTTATACCAATAATAATTGCCGGCTCTGTTAACACACG
AATGACTCAACCTGATTACTGAACACAAAGAagtatgaatttgaaaattc
taaagTCAAATGATGTCTATGTTCTCACGATTTGTTTGATTCTTGTGGTT
GGTTCTGGGGCCAATTTCTCGAATGGTACTGGTAACATTACCAGAGGCAA
GTCACTAACGGATATTTACGACAAAATATTCGGAGAATCAGCCAATTATA
AACCAGAAGTCAAAGCATCGCAGGAGGAAGGACGAAGACGACTTGATGTC
ATATTTGATATCAACATTCGTACAATACTCGGACTGgAAGTCAAAACTCA
AACCTTCCATCTCACAGCTGTTATACACATGaGATGGAAAGACAAAAGAT
TGACTTGGAACGAAAGTGAATTTGATGGTATCGATACGTTAAACGTTGGG
AATTCCATTGTCTGGACTCCTGACATCATGCTTTATAACGAcGTGAACGA
GGAAACGTTATCACACACAGAGATATTCCGTTCCAAAGTGTTGATTCAAA
ATGACGGTACAGTAATATGGACGAACCCGGTGACTATCAAATCCACGTGT
CAAGTTGATGTCACGTGGTTCCCTGTTGATTATCAAGTTTGTAATTTGAC
GTTTGGTTCATGGTCCTATTCTGAGCAAGTCATGAATATAAAGTTtcgaa
ataaaaagaaagatcGCGACATGATTAAGTCAGattttcacaTTCCAAGT
GGCGAATGGTCGATGGaggaaatcaagtttttcgaagaagaaaaaacatt
tgaatGCTGCAAAAATCCTTTCTCAGTCATTACATTACAAGTCTTCATGA
AGCGTTATCCAGATTTTTACTATCTCTATGTATTTCTCCCCTTTATCTCA
CAAATCATTCTATTCCTGCTGATTTTTCACATCCATCCTGACCAAGGAGA
TCGTTTGAGTTACGGAGTTGCCCTGCTGTTAAATATGACTATGTACATGA
TTTTCCTATCTGATAAACTACCAGAGAAATCAGACAGTGTGCCATACGTT
GGAGCTCTGTTTGTCACATTCTTCTTCCTACTCTCTATTGCATTGGTTTT
ATCAGCTGTAACGATGCATTGCTCGACACGCGATACACCTTTACCAATGA
TTGCTCACAAAGTTAAAGCAATTACTAATCGAATATGGCCTTGTGGAAAG
AAATCAAATGCTAGATCCAAATCGAGTAAATACGGATCTTACAACATGAA
ACTCCGAAAACCAAAATCAGAAACAGATTCCAATTTCAATGATCCTCGTG
GTCCCAAGGGTGATGCAAATCGAAAAGTGTCGGATTTGATAGAATCGGAT
TCTGAGTCAAGCTCAGTTGAAATTGCCCGTAACGACAAATATGAGAATCG
TTTCGAAGGATGGTTCGAATTCATGAGATTTACGGAAAAATGGCTAACAG
TCATCTTTGCATTTTTGCTGGTTGTTATACCAATAATAATTGCCGGCTCT
GTTAACACACGAATGACTCAACCTGATTACTGAACACAAAGAagtatgaa
tttgaaaattctaaagTCAAATGATGTCTATGTTCTCACGATTTGTTTGA
TTCTTGTGGTTGGTTCTGGGGCCAATTTCTCGAATGGTACTGGTAACATT
ACCAGAGGCAAGTCACTAACGGATATTTACGACAAAATATTCGGAGAATC
AGCCAATTATAAACCAGAAGTCAAAGCATCGCAGGAGGAAGGACGAAGAC
GACTTGATGTCATATTTGATATCAACATTCGTACAATACTCGGACTGgAA
GTCAAAACTCAAACCTTCCATCTCACAGCTGTTATACACATGaGATGGAA
AGACAAAAGATTGACTTGGAACGAAAGTGAATTTGATGGTATCGATACGT
TAAACGTTGGGAATTCCATTGTCTGGACTCCTGACATCATGCTTTATAAC
GAcGTGAACGAGGAAACGTTATCACACACAGAGATATTCCGTTCCAAAGT
GTTGATTCAAAATGACGGTACAGTAATATGGACGAACCCGGTGACTATCA
AATCCACGTGTCAAGTTGATGTCACGTGGTTCCCTGTTGATTATCAAGTT
TGTAATTTGACGTTTGGTTCATGGTCCTATTCTGAGCAAGTCATGAATAT
AAAGTTtcgaaataaaaagaaagatcGCGACATGATTAAGTCAGattttc
acaTTCCAAGTGGCGAATGGTCGATGGaggaaatcaagtttttcgaagaa
gaaaaaacatttgaatGCTGCAAAAATCCTTTCTCAGTCATTACATTACA
AGTCTTCATGAAGCGTTATCCAGATTTTTACTATCTCTATGTATTTCTCC
CCTTTATCTCACAAATCATTCTATTCCTGCTGATTTTTCACATCCATCCT
GACCAAGGAGATCGTTTGAGTTACGGAGTTGCCCTGCTGTTAAATATGAC
TATGTACATGATTTTCCTATCTGATAAACTACCAGAGAAATCAGACAGTG
TGCCATACGTTGGAGCTCTGTTTGTCACATTCTTCTTCCTACTCTCTATT
GCATTGGTTTTATCAGCTGTAACGATGCATTGCTCGACACGCGATACACC
TTTACCAATGATTGCTCACAAAGTTAAAGCAATTACTAATCGAATATGGC
CTTGTGGAAAGAAATCAAATGCTAGATCCAAATCGAGTAAATACGGATCT
TACAACATGAAACTCCGAAAACCAAAATCAGAAACAGATTCCAATTTCAA
TGATCCTCGTGGTCCCAAGGGTGATGCAAATCGAAAAGTGTCGGATTTGA
TAGAATCGGATTCTGAGTCAAGCTCAGTTGAAATTGCCCGTAACGACAAA
TATGAGAATCGTTTCGAAGGATGGTTCGAATTCATGAGATTTACGGAAAA
ATGGCTAACAGTCATCTTTGCATTTTTGCTGGTTGTTATACCAATAATAA
TTGCCGGCTCTGTTAACACACGAATGACTCAACCTGATTACTGAACACAA
AGAagtatgaatttgaaaattctaaagTCAAATGATGTCTATGTTCTCAC
GATTTGTTTGATTCTTGTGGTTGGTTCTGGGGCCAATTTCTCGAATGGTA
CTGGTAACATTACCAGAGGCAAGTCACTAACGGATATTTACGACAAAATA
TTCGGAGAATCAGCCAATTATAAACCAGAAGTCAAAGCATCGCAGGAGGA
AGGACGAAGACGACTTGATGTCATATTTGATATCAACATTCGTACAATAC
TCGGACTGgAAGTCAAAACTCAAACCTTCCATCTCACAGCTGTTATACAC
ATGaGATGGAAAGACAAAAGATTGACTTGGAACGAAAGTGAATTTGATGG
TATCGATACGTTAAACGTTGGGAATTCCATTGTCTGGACTCCTGACATCA
TGCTTTATAACGAcGTGAACGAGGAAACGTTATCACACACAGAGATATTC
CGTTCCAAAGTGTTGATTCAAAATGACGGTACAGTAATATGGACGAACCC
GGTGACTATCAAATCCACGTGTCAAGTTGATGTCACGTGGTTCCCTGTTG
ATTATCAAGTTTGTAATTTGACGTTTGGTTCATGGTCCTATTCTGAGCAA
GTCATGAATATAAAGTTtcgaaataaaaagaaagatcGCGACATGATTAA
GTCAGattttcacaTTCCAAGTGGCGAATGGTCGATGGaggaaatcaagt
ttttcgaagaagaaaaaacatttgaatGCTGCAAAAATCCTTTCTCAGTC
ATTACATTACAAGTCTTCATGAAGCGTTATCCAGATTTTTACTATCTCTA
TGTATTTCTCCCCTTTATCTCACAAATCATTCTATTCCTGCTGATTTTTC
ACATCCATCCTGACCAAGGAGATCGTTTGAGTTACGGAGTTGCCCTGCTG
TTAAATATGACTATGTACATGATTTTCCTATCTGATAAACTACCAGAGAA
ATCAGACAGTGTGCCATACGTTGGAGCTCTGTTTGTCACATTCTTCTTCC
TACTCTCTATTGCATTGGTTTTATCAGCTGTAACGATGCATTGCTCGACA
CGCGATACACCTTTACCAATGATTGCTCACAAAGTTAAAGCAATTACTAA
TCGAATATGGCCTTGTGGAAAGAAATCAAATGCTAGATCCAAATCGAGTA
AATACGGATCTTACAACATGAAACTCCGAAAACCAAAATCAGAAACAGAT
TCCAATTTCAATGATCCTCGTGGTCCCAAGGGTGATGCAAATCGAAAAGT
GTCGGATTTGATAGAATCGGATTCTGAGTCAAGCTCAGTTGAAATTGCCC
GTAACGACAAATATGAGAATCGTTTCGAAGGATGGTTCGAATTCATGAGA
TTTACGGAAAAATGGCTAACAGTCATCTTTGCATTTTTGCTGGTTGTTAT
ACCAATAATAATTGCCGGCTCTGTTAACACACGAATGACTCAACCTGATT
ACTGAACACAAAGAagtatgaatttgaaaattctaaagTCAAATGATGTC
TATGTTCTCACGATTTGTTTGATTCTTGTGGTTGGTTCTGGGGCCAATTT
CTCGAATGGTACTGGTAACATTACCAGAGGCAAGTCACTAACGGATATTT
ACGACAAAATATTCGGAGAATCAGCCAATTATAAACCAGAAGTCAAAGCA
TCGCAGGAGGAAGGACGAAGACGACTTGATGTCATATTTGATATCAACAT
TCGTACAATACTCGGACTGgAAGTCAAAACTCAAACCTTCCATCTCACAG
CTGTTATACACATGaGATGGAAAGACAAAAGATTGACTTGGAACGAAAGT
GAATTTGATGGTATCGATACGTTAAACGTTGGGAATTCCATTGTCTGGAC
TCCTGACATCATGCTTTATAACGAcGTGAACGAGGAAACGTTATCACACA
CAGAGATATTCCGTTCCAAAGTGTTGATTCAAAATGACGGTACAGTAATA
TGGACGAACCCGGTGACTATCAAATCCACGTGTCAAGTTGATGTCACGTG
GTTCCCTGTTGATTATCAAGTTTGTAATTTGACGTTTGGTTCATGGTCCT
ATTCTGAGCAAGTCATGAATATAAAGTTtcgaaataaaaagaaagatcGC
GACATGATTAAGTCAGattttcacaTTCCAAGTGGCGAATGGTCGATGGa
ggaaatcaagtttttcgaagaagaaaaaacatttgaatGCTGCAAAAATC
CTTTCTCAGTCATTACATTACAAGTCTTCATGAAGCGTTATCCAGATTTT
TACTATCTCTATGTATTTCTCCCCTTTATCTCACAAATCATTCTATTCCT
GCTGATTTTTCACATCCATCCTGACCAAGGAGATCGTTTGAGTTACGGAG
TTGCCCTGCTGTTAAATATGACTATGTACATGATTTTCCTATCTGATAAA
CTACCAGAGAAATCAGACAGTGTGCCATACGTTGGAGCTCTGTTTGTCAC
ATTCTTCTTCCTACTCTCTATTGCATTGGTTTTATCAGCTGTAACGATGC
ATTGCTCGACACGCGATACACCTTTACCAATGATTGCTCACAAAGTTAAA
GCAATTACTAATCGAATATGGCCTTGTGGAAAGAAATCAAATGCTAGATC
CAAATCGAGTAAATACGGATCTTACAACATGAAACTCCGAAAACCAAAAT
CAGAAACAGATTCCAATTTCAATGATCCTCGTGGTCCCAAGGGTGATGCA
AATCGAAAAGTGTCGGATTTGATAGAATCGGATTCTGAGTCAAGCTCAGT
TGAAATTGCCCGTAACGACAAATATGAGAATCGTTTCGAAGGATGGTTCG
AATTCATGAGATTTACGGAAAAATGGCTAACAGTCATCTTTGCATTTTTG
CTGGTTGTTATACCAATAATAATTGCCGGCTCTGTTAACACACGAATGAC
TCAACCTGATTACTGAACACAAAGAagtatgaatttgaaaattctaaagT
CAAATGATGTCTATGTTCTCACGATTTGTTTGATTCTTGTGGTTGGTTCT
GGGGCCAATTTCTCGAATGGTACTGGTAACATTACCAGAGGCAAGTCACT
AACGGATATTTACGACAAAATATTCGGAGAATCAGCCAATTATAAACCAG
AAGTCAAAGCATCGCAGGAGGAAGGACGAAGACGACTTGATGTCATATTT
GATATCAACATTCGTACAATACTCGGACTGgAAGTCAAAACTCAAACCTT
CCATCTCACAGCTGTTATACACATGaGATGGAAAGACAAAAGATTGACTT
GGAACGAAAGTGAATTTGATGGTATCGATACGTTAAACGTTGGGAATTCC
ATTGTCTGGACTCCTGACATCATGCTTTATAACGAcGTGAACGAGGAAAC
GTTATCACACACAGAGATATTCCGTTCCAAAGTGTTGATTCAAAATGACG
GTACAGTAATATGGACGAACCCGGTGACTATCAAATCCACGTGTCAAGTT
GATGTCACGTGGTTCCCTGTTGATTATCAAGTTTGTAATTTGACGTTTGG
TTCATGGTCCTATTCTGAGCAAGTCATGAATATAAAGTTtcgaaataaaa
agaaagatcGCGACATGATTAAGTCAGattttcacaTTCCAAGTGGCGAA
TGGTCGATGGaggaaatcaagtttttcgaagaagaaaaaacatttgaatG
CTGCAAAAATCCTTTCTCAGTCATTACATTACAAGTCTTCATGAAGCGTT
ATCCAGATTTTTACTATCTCTATGTATTTCTCCCCTTTATCTCACAAATC
ATTCTATTCCTGCTGATTTTTCACATCCATCCTGACCAAGGAGATCGTTT
GAGTTACGGAGTTGCCCTGCTGTTAAATATGACTATGTACATGATTTTCC
TATCTGATAAACTACCAGAGAAATCAGACAGTGTGCCATACGTTGGAGCT
CTGTTTGTCACATTCTTCTTCCTACTCTCTATTGCATTGGTTTTATCAGC
TGTAACGATGCATTGCTCGACACGCGATACACCTTTACCAATGATTGCTC
ACAAAGTTAAAGCAATTACTAATCGAATATGGCCTTGTGGAAAGAAATCA
AATGCTAGATCCAAATCGAGTAAATACGGATCTTACAACATGAAACTCCG
AAAACCAAAATCAGAAACAGATTCCAATTTCAATGATCCTCGTGGTCCCA
AGGGTGATGCAAATCGAAAAGTGTCGGATTTGATAGAATCGGATTCTGAG
TCAAGCTCAGTTGAAATTGCCCGTAACGACAAATATGAGAATCGTTTCGA
AGGATGGTTCGAATTCATGAGATTTACGGAAAAATGGCTAACAGTCATCT
TTGCATTTTTGCTGGTTGTTATACCAATAATAATTGCCGGCTCTGTTAAC
ACACGAATGACTCAACCTGATTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044535XLOC_044535Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071693-proteinTCONS_00071693-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071693-exon-scaffold_63-1491911889:1161701..1161826TCONS_00071693-exon-scaffold_63-1491911889:1161701..1161826Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1510915933:1161701..1161826TCONS_00071693-exon-scaffold_63-1510915933:1161701..1161826Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1575043694:1161701..1161826TCONS_00071693-exon-scaffold_63-1575043694:1161701..1161826Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1491911889:1163002..1163141TCONS_00071693-exon-scaffold_63-1491911889:1163002..1163141Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1510915933:1163002..1163141TCONS_00071693-exon-scaffold_63-1510915933:1163002..1163141Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1575043694:1163002..1163141TCONS_00071693-exon-scaffold_63-1575043694:1163002..1163141Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1491911889:1163435..1163479TCONS_00071693-exon-scaffold_63-1491911889:1163435..1163479Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1510915933:1163435..1163479TCONS_00071693-exon-scaffold_63-1510915933:1163435..1163479Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1575043694:1163435..1163479TCONS_00071693-exon-scaffold_63-1575043694:1163435..1163479Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1491911889:1164248..1164357TCONS_00071693-exon-scaffold_63-1491911889:1164248..1164357Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1510915933:1164248..1164357TCONS_00071693-exon-scaffold_63-1510915933:1164248..1164357Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1575043694:1164248..1164357TCONS_00071693-exon-scaffold_63-1575043694:1164248..1164357Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1491911889:1164793..1164937TCONS_00071693-exon-scaffold_63-1491911889:1164793..1164937Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1510915933:1164793..1164937TCONS_00071693-exon-scaffold_63-1510915933:1164793..1164937Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1575043694:1164793..1164937TCONS_00071693-exon-scaffold_63-1575043694:1164793..1164937Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1491911889:1165252..1165348TCONS_00071693-exon-scaffold_63-1491911889:1165252..1165348Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1510915933:1165252..1165348TCONS_00071693-exon-scaffold_63-1510915933:1165252..1165348Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1575043694:1165252..1165348TCONS_00071693-exon-scaffold_63-1575043694:1165252..1165348Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1491911889:1166224..1167377TCONS_00071693-exon-scaffold_63-1491911889:1166224..1167377Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1510915933:1166224..1167377TCONS_00071693-exon-scaffold_63-1510915933:1166224..1167377Clytia hemisphaericaexon
TCONS_00071693-exon-scaffold_63-1575043694:1166224..1167377TCONS_00071693-exon-scaffold_63-1575043694:1166224..1167377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1161701..1167377 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
71.7403	70.7772	38.8916	35.6854	0.148768	0.14107	1.75868	1.79878	2.30518	1.4104	1.92236	1.77354	1.82995	1.35666	1.31222	1.64902	0.28339	0.252753	1.54795	1.16796	0.490637	0.566346	21.0762	21.4934	0.307949	0.283947	1.18302	2.16871	4.99348	8.05747
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00071693 vs. Swiss-Prot (Human)
Match: ACHA9 (Neuronal acetylcholine receptor subunit alpha-9 OS=Homo sapiens GN=CHRNA9 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.604e-39
Identity = 100/328 (30.49%), Postives = 179/328 (54.57%), Query Frame = 3 
Query:  126 GKSLTDIYDKIFGESANYKPEVKASQEEGRRRLDVIFDINIRTILGLEVKTQTFHLTAVIHMR--WKDKRLTWNESEFDGIDTLNVGNSIVWTPDIMLYNDVNEETLSHTEIFRSKVLIQNDGTVIWTNPVTIKSTCQVDVTWFPVDYQVCNLTFGSWSYSEQVMNIKFRNKKKDRDMIKSDFHIPSGEWSMXXXXXXXXXXXXXXXXNPFSVITLQVFMKRYPDFYYLYVXXXXXXXXXXXXXXXHIHPDQGDRLSYGVALLLNMTMYMIFLSDKLPEKSDSVPYVGALFVTFFFLLSIALVLSAVTMH---CSTRDTPLPMIAHKV 1094
            GK    +++ +F + +N    V    E+  + L+V   I +  I  ++ + Q   LTA + +R  W D  LTW+  ++DG+D++ + + +VW PDI+LYN  ++E+   +E   + V+++ DG + W  P   KS+C VDVT+FP D Q CNLTFGSW+Y+   ++I   N     D+  SDF I   EW +  +   +   ++ CC  P+  +T  + +KR   FY + + +P +    L  L F++    G+++S GV +LL MT++ + +++ +P  S++VP +G  ++    L++ +  L+ + M+   C     P+P  A  V
Sbjct:   28 GKYAQKLFNDLFEDYSNALRPV----EDTDKVLNVTLQITLSQIKDMDERNQI--LTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDES---SEPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDI--FNALDSGDL--SDF-IEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMP-ASENVPLIGKYYIATMALITASTALTIMVMNIHFCGAEARPVPHWARVV 340
The following BLAST results are available for this feature:
BLAST of TCONS_00071693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA91.604e-3930.49Neuronal acetylcholine receptor subunit alpha-9 OS... [more]
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