TCONS_00071693-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071693-protein
Unique Name	TCONS_00071693-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	486

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071693-protein ID=TCONS_00071693-protein|Name=TCONS_00071693-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
TQRSMNLKILKSNDVYVLTICLILVVGSGANFSNGTGNITRGKSLTDIYD
KIFGESANYKPEVKASQEEGRRRLDVIFDINIRTILGLEVKTQTFHLTAV
IHMRWKDKRLTWNESEFDGIDTLNVGNSIVWTPDIMLYNDVNEETLSHTE
IFRSKVLIQNDGTVIWTNPVTIKSTCQVDVTWFPVDYQVCNLTFGSWSYS
EQVMNIKFRNKKKDRDMIKSDFHIPSGEWSMEEIKFFEEEKTFECCKNPF
SVITLQVFMKRYPDFYYLYVFLPFISQIILFLLIFHIHPDQGDRLSYGVA
LLLNMTMYMIFLSDKLPEKSDSVPYVGALFVTFFFLLSIALVLSAVTMHC
STRDTPLPMIAHKVKAITNRIWPCGKKSNARSKSSKYGSYNMKLRKPKSE
TDSNFNDPRGPKGDANRKVSDLIESDSESSSVEIARNDKYENRFEGWFEF
MRFTEKWLTVIFAFLLVVIPIIIAGSVNTRMTQPDY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044535	XLOC_044535	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071693	TCONS_00071693	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006201	Neur_channel
IPR006029	Neurotrans-gated_channel_TM
IPR006202	Neur_chan_lig-bd
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 96..112 score: 29.01 coord: 176..190 score: 47.03 coord: 129..140 score: 44.19 coord: 257..269 score: 24.05
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 273..424 e-value: 2.3E-10 score: 40.9
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 263..477
None	No IPR available	GENE3D	1.20.58.390		coord: 269..484 e-value: 1.8E-20 score: 72.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..425
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 32..268 e-value: 1.5E-53 score: 181.0
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 47..262 e-value: 5.1E-49 score: 166.6
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 46..261
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 176..190

Blast

[Close]

BLAST of TCONS_00071693-protein vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 181.415 bits (459), Expect = 2.983e-51
Identity = 90/297 (30.30%), Postives = 157/297 (52.86%), Query Frame = 0

Query:   58 NYKPEVKASQEEGRRRLDVIFDINIRTILGLEVKTQTFHLTAVIHMRWKDKRLTWNESEFDGIDTLNVGNSIVWTPDIMLYNDVNEETLSHTEIFRSKVLIQNDGTVIWTNPVTIKSTCQVDVTWFPVDYQVCNLTFGSWSYSEQVMNIKFRNKKKDRDMIKSDFHIPSGEWSMEEIKFFEEEKTFECCKNPFSVITLQVFMKRYPDFYYLYVFLPFISQIILFLLIFHIHPDQGDRLSYGVALLLNMTMYMIFLSDKLPEKSDSVPYVGALFVTFFFLLSIALVLSAVTMHCSTRD 354
            NY P  +    + +  L V F +++  I+ ++ K Q       + M W D  L WN SE+ G+ T+   +  +W PDI+LYN  +E        F + VL+ + G   +  P   KS+C +DV WFP D Q C L FGSWSY    ++++ +             +IP+GEW +  I     E+ +ECCK P+  +T  V M+R   +Y L + +P +    L LL+F +  D G+++S G+ +LL++T++M+ +++ +P  SDSVP +   F +   ++ +++V++ + +     D
Sbjct:   36 NYNPLERPVANDSQP-LTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADER---FDATFHTNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQMQEADISG-------YIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHD 321

The following BLAST results are available for this feature:

BLAST of TCONS_00071693-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071693-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACHA7	2.983e-51	30.30	Neuronal acetylcholine receptor subunit alpha-7 OS...	[more]

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TCONS_00071693-protein (polypeptide) - C. hemisphaerica