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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071483 ID=TCONS_00071483|Name=TCONS_00071483|organism=Clytia hemisphaerica|type=transcript|length=1330bp aaaaacaatgaaacGCAAAAAGTATAAGTACCcatcaaattttgtcaatt ggTCATTCAAAAGCAACCTTGGGGAAAAAGTGAACCAATACAGAGCACTG AAGAACAAAGGAACTAACTTGACTTTTTAAGgaagaaaatgaagatcagT TTGTTGGTTTTAGTGCTGGCAACTCTTGTAGttGCTGATCGAGCTTACCG AGATGATATTCGAGAGTTGAAAAAACTCGATCAAAACATTTTATACGACA TGTTGAAAGATAAACGATTATACGATCATGTTGATTTTGATGACGAGACG AAAAAATTTCTAACCAGCCATTCTAAAGacgAACTGCGAGATATAATGGA TATGCTTTCAgctgatgaagatgaagatgaagacaCTGGCGATGATAAAG AACTGGAGGAAGAAAAAGGATTAGGAGACAAAGAAATGGAGACTAGACCC AAAAGAAAGGAAACCTTGGATGAAAACAAAAAGGATAATGACAATGATGA GGATTTAGATGAAGTTTTAGCTGACGACGCTGACGATTTCGATGAAGAAG ACGTACGACATTTACCTAAAGAACAACGTGATCCATGGTGGCGTGGACGT CGCCGACGACGATTTTGGAGAACAATTGCCAAACCGTTCAAACACGTTGG CAATTTCGTCAAAAAACATCACAAAAAGATTGTGAAAGGTGTGGTAGCTG CAGCTAAGTTGTGTAGACAAACCAGATGTCACCGTATGATTAGaggtaaa aaataaaatggGTTACAAATAATTCCAAACCCCTTCAGTACCCTGCTTGC TCATCATATCTCAATGACGGTATacagggttttttataagaaaattcaac cttattggatgttcttaactttttttatttttaagcctaaaaatattctt aatgcatcttcttattttccccatttcgtgagcatttttgtccattttcc ttagaaatcggatgttttctcaaagtccacaaagccttaaaaatgttctt aacttgttcttaacattcttgctatcgaagccttatgttcttatatagtt tattcttatataaaaaaaatctcaatcaaAAGATCAAGCAACCCgtatta tttaatttttatatgTGTAATTTTGAATATAAAATATAAGCTGTCAAAAG TCAAATAAGTCATAAAATTCTGAAATCGACTTTCGTTTGATTATGCTTAT GTGAATGATAGCTTATTTCTTTGTGGGGAATACTTATaatcttaaaaatt attttttgataaacttttgtattttttacaTTATTTACATTTTACTATTT TAGATAAAATGAATCTTTAACGGAAAacaa Run BLAST on NCBI protein sequence of TCONS_00071483-protein >TCONS_00071483-protein ID=TCONS_00071483-protein|Name=TCONS_00071483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MKISLLVLVLATLVVADRAYRDDIRELKKLDQNILYDMLKDKRLYDHVDF DDETKKFLTSHSKDELRDIMDMLSADEDEDEDTGDDKELEEEKGLGDKEM ETRPKRKETLDENKKDNDNDEDLDEVLADDADDFDEEDVRHLPKEQRDPW WRGRRRRRFWRTIAKPFKHVGNFVKKHHKKIVKGVVAAAKLCRQTRCHRM IRGKK Run BLAST on NCBI transcript from alignment at scaffold_60:1700040..1704098- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071483 ID=TCONS_00071483|Name=TCONS_00071483|organism=Clytia hemisphaerica|type=transcript|length=4059bp|location=Sequence derived from alignment at scaffold_60:1700040..1704098- (Clytia hemisphaerica) AAAAACAATGAAACGCAAAAAGTATAAGTACCCATCAAATTTTGTCAATT
GGTCATTCAAAAGCAACCTTGGGGAAAAAGTGAACCAATACAGAGCACTG
AAGAACAAAGGAACTAACTTGACTTTTTAAGGTAAGTAAATTGAAACTGT
TTATATTGAACTATTTTGGATAAGCCGAAACCTACTAAACATTTTACAGT
AGAGTCTCTTTAACTCGAACATCTTAACTCGAATGTTTATCATAAACTCG
AACAAGTTTTCTCGCCCCTTTTGTTAACAATGCGTTATAAACCTTATTTC
ATAACTAAAACTTTCCTTGACTCGAATAAATATGTGAACCACGTGAGTGT
TCGAGTTACGGAGACTCAACATATACATAGTGTCCTCCAGGGTTTGTTCC
CCCCACCAAATTCTTGATTTTTTTAAATCTCCCCCCTCTTTTTTTCCCCC
TATGACTTTTCAGTTTTTTAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACTATCGATGTTTTCCCCCTCTTTTTTTCCCCCCTTTACTATTCAAATTT
TCATTTCCCCCCCTCACCCATTCAAAACTGGAAAATTGATTCCCCCCCCC
TTTATAAAGGGGGGGGGAGGACACTATGATATATGAATTGACTCTTTCGG
AAAATTTTTCATTGATATTTCCTATTAATTCTAAAATTTACTCCTTTGGG
TGCTATTGATGCTAAAATTTTGAAGCCTGCTTTTTATTCTCATATGTACT
TGAAGAGGTTTGAACCAACCATCATACTTTTCCCCATTGTCTATGTCCCC
TGAGAGTTAATATTTTCTCTGTTTTATTCCACAGGAAGAAAATGAAGATC
AGTTTGTTGGTTTTAGTGCTGGCAACTCTTGTAGGTTAGTAAAATATCAA
TCTCTATTTAGCTTACACATTTTTTATGTGGCTAAAATTTCAAAGCTTTA
AAACAGGAGCAGCCCATATAAAGTTGTTGGACGGATTTTTCTAAACCATT
TATTGGGCTATTCCATAAAAAAATATTTGTACCCCCTATACCCTATGTTG
AGGAGGTCTTTTTTGGGAAAGGTTTTTTTAATTTTCAGGACCCCCTTGAA
TTTTTTTCCTCATTTCTGGACCACCCTGGATTTTCGACCTCGTTTTACTG
ACCACCCTGAATTTTTCACCCCATTTTACTGTATACCAGACCCCTTTGAA
TTTTTACTTTCCAGACAACCCTTGACAACACCTGTCACACCTTCGCAACA
TATTGAATAGACTATTTTCTGGAATAGCCCATCGGGATGGTAGTGTAATT
TGAAGTGGTGTTTGTTTTTAAAATAAGTGTGTTTCTATGAACAAAAAACT
GATTCATTTATTTTTCAGTTGCTGATCGAGCTTACCGAGATGATATTCGA
GAGTTGAAAAAACTCGATCAAAACATTTTATACGACATGTTGAAAGATAA
ACGATTATACGATCATGTTGATTTTGATGACGAGACGAAAAAATTTCTAA
CCAGCCATTCTAAAGGTAAGTCGTCAGTAATTAAACTATTTATGATTCTG
AGATCATGTTCAGACGTTACGGTTCCGTATCGCTCCGGTATGGTATTTGT
TACGGATAGAAAGTGTTCGTACTGATTTTAGAACGTTTCCAAGCAATGAA
ATGGAGGAGTTCCGTTCCGATGTAAAAAGTGAAGCGAAACCGTTTCGATC
TGTTGTGCCTGTACCGCCCTGCACAAGGGCGTTTTTCATGTCTTGAAAAA
ACTTGCCGCGTATCTTTAGCAATATAAACATTGAACCAAGCTATATCCGC
GATTTATGACCGGAGGTTTTTTTGAAATTGGTACCCGCAAAGAAGCCATT
CTTGTGTTAGAACTTTTCCTTAAGACAAACGGCGCTGCAGCACTAGTCTA
TGAAGTCTACAAGTAAAGGAAGAAGATCTAATAACTTCTAAATAACCTAA
ATAACTTCTTGAGTTCACAAAAAAGCTTCAACCGATGCAAAATAGAACAG
ATTTGCGCTGTCATTCGCCAAAATAAGTTCTCGCCAAAATTAAAAAGATC
GTTCTCTCGCCAAATTAAGTTCTCGACAAAATTTAAAAAAAAATTGAATC
GACCGTTCGTCAAAATTAGTTCTCGCCAAAAAAAGTTCCATTAAGGTATC
TAGCCCATCTTCTGTCGAAAAGTGGCGTATATCTATCCAGTCATTAATGA
AATATCATTTTTATTTTATTTTCAGACGAACTGCGAGATATAATGGATAT
GCTTTCAGCTGATGAAGATGAAGATGAAGACACTGGCGATGATAAAGAAC
TGGAGGAAGAAAAAGGTTAGAAATTGACCCCAACAAAATAATTTTAAGTA
CTTTAACTTTTTTGGTCATATTTTTTTGATGTTGCTTTTCTTTTACGCAA
TAAGCCTGGGAACCTGTTCTGGTCTGGTCTGTAAAATACACAAACAGGTG
GCATTTTTTTGGGTCCTAGATTTAAATCCATTTTTTACCCCTAAACTATA
ATCATGCAAAATCTCGTACTTTTACGCCTTTGTGCACATATTTTACTCAA
CTAGACCGTACTACTTCTCTAAGGTCCCGAATAAATGTCCCCATCCGGTT
ATTCATTTTCAAAATTAAAACATTTTTTCTATCCTATTTTTATAAAGGAT
TAGGAGACAAAGAAATGGAGACTAGACCCAAAAGAAAGGAAACCTTGGAT
GAAAACAAAAAGGATAATGACAATGATGAGGATTTAGATGAAGTTTTAGC
TGACGACGCTGACGATTTCGATGAAGAAGACGTACGACATTTACCTAAAG
AACAACGTGATCCATGGTGGCGTGGACGTCGCCGACGACGATTTTGGAGA
ACAATTGCCAAACCGTTCAAACACGTTGGCAATTTCGTCAAAAAACATCA
CAAAAAGATTGTGAAAGGTGTGGTAGCTGCAGCTAAGTTGTGTAGACAAA
CCAGATGTCACCGTATGATTAGAGGTAAAAAATAAAATGGGTTACAAATA
ATTCCAAACCCCTTCAGTACCCTGCTTGCTCATCATATCTCAATGACGGT
ATACAGGGTTTTTTATAAGAAAATTCAACCTTATTGGATGTTCTTAACTT
TTTTTATTTTTAAGCCTAAAAATATTCTTAATGCATCTTCTTATTTTCCC
CATTTCGTGAGCATTTTTGTCCATTTTCCTTAGAAATCGGATGTTTTCTC
AAAGTCCACAAAGCCTTAAAAATGTTCTTAACTTGTTCTTAACATTCTTG
CTATCGAAGCCTTATGTTCTTATATAGTTTATTCTTATATAAAAAAAATC
TCAATCAAAAGATCAAGCAACCCGTATTATTTAATTTTTATATGTGTAAT
TTTGAATATAAAATATAAGCTGTCAAAAGTCAAATAAGTCATAAAATTCT
GAAATCGACTTTCGTTTGATTATGCTTATGTGAATGATAGCTTATTTCTT
TGTGGGGAATACTTATAATCTTAAAAATTATTTTTTGATAAACTTTTGTA
TTTTTTACATTATTTACATTTTACTATTTTAGATAAAATGAATCTTTAAC
GGAAAACAA Coding sequence (CDS) from alignment at scaffold_60:1700040..1704098- >TCONS_00071483 ID=TCONS_00071483|Name=TCONS_00071483|organism=Clytia hemisphaerica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_60:1700040..1704098- (Clytia hemisphaerica) GATTAGGAGACAAAGAAATGGAGACTAGACCCAAAAGAAAGGAAACCTTG GATGAAAACAAAAAGGATAATGACAATGATGAGGATTTAGATGAAGTTTT AGCTGACGACGCTGACGATTTCGATGAAGAAGACGTACGACATTTACCTA AAGAACAACGTGATCCATGGTGGCGTGGACGTCGCCGACGACGATTTTGG AGAACAATTGCCAAACCGTTCAAACACGTTGGCAATTTCGTCAAAAAACA TCACAAAAAGATTGTGAAAGGTGTGGTAGCTGCAGCTAAGTTGTGTAGAC AAACCAGATGTCACCGTATGATTAGAGGTAAAAAATAAACGAACTGCGAG ATATAATGGATATGCTTTCAGCTGATGAAGATGAAGATGAAGACACTGGC GATGATAAAGAACTGGAGGAAGAAAAAGTTGCTGATCGAGCTTACCGAGA TGATATTCGAGAGTTGAAAAAACTCGATCAAAACATTTTATACGACATGT TGAAAGATAAACGATTATACGATCATGTTGATTTTGATGACGAGACGAAA AAATTTCTAACCAGCCATTCTAAAGATGAAGATCAGTTTGTTGGTTTTAG TGCTGGCAACTCTTGTAGGATTAGGAGACAAAGAAATGGAGACTAGACCC AAAAGAAAGGAAACCTTGGATGAAAACAAAAAGGATAATGACAATGATGA GGATTTAGATGAAGTTTTAGCTGACGACGCTGACGATTTCGATGAAGAAG ACGTACGACATTTACCTAAAGAACAACGTGATCCATGGTGGCGTGGACGT CGCCGACGACGATTTTGGAGAACAATTGCCAAACCGTTCAAACACGTTGG CAATTTCGTCAAAAAACATCACAAAAAGATTGTGAAAGGTGTGGTAGCTG CAGCTAAGTTGTGTAGACAAACCAGATGTCACCGTATGATTAGAGGTAAA AAATAAACGAACTGCGAGATATAATGGATATGCTTTCAGCTGATGAAGAT GAAGATGAAGACACTGGCGATGATAAAGAACTGGAGGAAGAAAAAGTTGC TGATCGAGCTTACCGAGATGATATTCGAGAGTTGAAAAAACTCGATCAAA ACATTTTATACGACATGTTGAAAGATAAACGATTATACGATCATGTTGAT TTTGATGACGAGACGAAAAAATTTCTAACCAGCCATTCTAAAGATGAAGA TCAGTTTGTTGGTTTTAGTGCTGGCAACTCTTGTAGGATTAGGAGACAAA GAAATGGAGACTAGACCCAAAAGAAAGGAAACCTTGGATGAAAACAAAAA GGATAATGACAATGATGAGGATTTAGATGAAGTTTTAGCTGACGACGCTG ACGATTTCGATGAAGAAGACGTACGACATTTACCTAAAGAACAACGTGAT CCATGGTGGCGTGGACGTCGCCGACGACGATTTTGGAGAACAATTGCCAA ACCGTTCAAACACGTTGGCAATTTCGTCAAAAAACATCACAAAAAGATTG TGAAAGGTGTGGTAGCTGCAGCTAAGTTGTGTAGACAAACCAGATGTCAC CGTATGATTAGAGGTAAAAAATAAACGAACTGCGAGATATAATGGATATG CTTTCAGCTGATGAAGATGAAGATGAAGACACTGGCGATGATAAAGAACT GGAGGAAGAAAAAGTTGCTGATCGAGCTTACCGAGATGATATTCGAGAGT TGAAAAAACTCGATCAAAACATTTTATACGACATGTTGAAAGATAAACGA TTATACGATCATGTTGATTTTGATGACGAGACGAAAAAATTTCTAACCAG CCATTCTAAAGATGAAGATCAGTTTGTTGGTTTTAGTGCTGGCAACTCTT GTAGGATTAGGAGACAAAGAAATGGAGACTAGACCCAAAAGAAAGGAAAC CTTGGATGAAAACAAAAAGGATAATGACAATGATGAGGATTTAGATGAAG TTTTAGCTGACGACGCTGACGATTTCGATGAAGAAGACGTACGACATTTA CCTAAAGAACAACGTGATCCATGGTGGCGTGGACGTCGCCGACGACGATT TTGGAGAACAATTGCCAAACCGTTCAAACACGTTGGCAATTTCGTCAAAA AACATCACAAAAAGATTGTGAAAGGTGTGGTAGCTGCAGCTAAGTTGTGT AGACAAACCAGATGTCACCGTATGATTAGAGGTAAAAAATAAACGAACTG CGAGATATAATGGATATGCTTTCAGCTGATGAAGATGAAGATGAAGACAC TGGCGATGATAAAGAACTGGAGGAAGAAAAAGTTGCTGATCGAGCTTACC GAGATGATATTCGAGAGTTGAAAAAACTCGATCAAAACATTTTATACGAC ATGTTGAAAGATAAACGATTATACGATCATGTTGATTTTGATGACGAGAC GAAAAAATTTCTAACCAGCCATTCTAAAGATGAAGATCAGTTTGTTGGTT TTAGTGCTGGCAACTCTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071483-exon-scaffold_60-1575043694:1703968..1704098 | TCONS_00071483-exon-scaffold_60-1575043694:1703968..1704098 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1575043694:1702715..1702764 | TCONS_00071483-exon-scaffold_60-1575043694:1702715..1702764 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1575043694:1702084..1702230 | TCONS_00071483-exon-scaffold_60-1575043694:1702084..1702230 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1575043694:1701284..1701373 | TCONS_00071483-exon-scaffold_60-1575043694:1701284..1701373 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1575043694:1700040..1700951 | TCONS_00071483-exon-scaffold_60-1575043694:1700040..1700951 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1510915933:1703968..1704098 | TCONS_00071483-exon-scaffold_60-1510915933:1703968..1704098 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1510915933:1702715..1702764 | TCONS_00071483-exon-scaffold_60-1510915933:1702715..1702764 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1510915933:1702084..1702230 | TCONS_00071483-exon-scaffold_60-1510915933:1702084..1702230 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1510915933:1701284..1701373 | TCONS_00071483-exon-scaffold_60-1510915933:1701284..1701373 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1510915933:1700040..1700951 | TCONS_00071483-exon-scaffold_60-1510915933:1700040..1700951 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1491911889:1703968..1704098 | TCONS_00071483-exon-scaffold_60-1491911889:1703968..1704098 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1491911889:1702715..1702764 | TCONS_00071483-exon-scaffold_60-1491911889:1702715..1702764 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1491911889:1702084..1702230 | TCONS_00071483-exon-scaffold_60-1491911889:1702084..1702230 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1491911889:1701284..1701373 | TCONS_00071483-exon-scaffold_60-1491911889:1701284..1701373 | Clytia hemisphaerica | exon |
TCONS_00071483-exon-scaffold_60-1491911889:1700040..1700951 | TCONS_00071483-exon-scaffold_60-1491911889:1700040..1700951 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_60 | supercontig | scaffold_60:1700040..1704098 - |
Blast
The following BLAST results are available for this feature:
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