TCONS_00071483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071483
Unique NameTCONS_00071483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071483 ID=TCONS_00071483|Name=TCONS_00071483|organism=Clytia hemisphaerica|type=transcript|length=1330bp
aaaaacaatgaaacGCAAAAAGTATAAGTACCcatcaaattttgtcaatt
ggTCATTCAAAAGCAACCTTGGGGAAAAAGTGAACCAATACAGAGCACTG
AAGAACAAAGGAACTAACTTGACTTTTTAAGgaagaaaatgaagatcagT
TTGTTGGTTTTAGTGCTGGCAACTCTTGTAGttGCTGATCGAGCTTACCG
AGATGATATTCGAGAGTTGAAAAAACTCGATCAAAACATTTTATACGACA
TGTTGAAAGATAAACGATTATACGATCATGTTGATTTTGATGACGAGACG
AAAAAATTTCTAACCAGCCATTCTAAAGacgAACTGCGAGATATAATGGA
TATGCTTTCAgctgatgaagatgaagatgaagacaCTGGCGATGATAAAG
AACTGGAGGAAGAAAAAGGATTAGGAGACAAAGAAATGGAGACTAGACCC
AAAAGAAAGGAAACCTTGGATGAAAACAAAAAGGATAATGACAATGATGA
GGATTTAGATGAAGTTTTAGCTGACGACGCTGACGATTTCGATGAAGAAG
ACGTACGACATTTACCTAAAGAACAACGTGATCCATGGTGGCGTGGACGT
CGCCGACGACGATTTTGGAGAACAATTGCCAAACCGTTCAAACACGTTGG
CAATTTCGTCAAAAAACATCACAAAAAGATTGTGAAAGGTGTGGTAGCTG
CAGCTAAGTTGTGTAGACAAACCAGATGTCACCGTATGATTAGaggtaaa
aaataaaatggGTTACAAATAATTCCAAACCCCTTCAGTACCCTGCTTGC
TCATCATATCTCAATGACGGTATacagggttttttataagaaaattcaac
cttattggatgttcttaactttttttatttttaagcctaaaaatattctt
aatgcatcttcttattttccccatttcgtgagcatttttgtccattttcc
ttagaaatcggatgttttctcaaagtccacaaagccttaaaaatgttctt
aacttgttcttaacattcttgctatcgaagccttatgttcttatatagtt
tattcttatataaaaaaaatctcaatcaaAAGATCAAGCAACCCgtatta
tttaatttttatatgTGTAATTTTGAATATAAAATATAAGCTGTCAAAAG
TCAAATAAGTCATAAAATTCTGAAATCGACTTTCGTTTGATTATGCTTAT
GTGAATGATAGCTTATTTCTTTGTGGGGAATACTTATaatcttaaaaatt
attttttgataaacttttgtattttttacaTTATTTACATTTTACTATTT
TAGATAAAATGAATCTTTAACGGAAAacaa
Run BLAST on NCBI

protein sequence of TCONS_00071483-protein

>TCONS_00071483-protein ID=TCONS_00071483-protein|Name=TCONS_00071483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MKISLLVLVLATLVVADRAYRDDIRELKKLDQNILYDMLKDKRLYDHVDF
DDETKKFLTSHSKDELRDIMDMLSADEDEDEDTGDDKELEEEKGLGDKEM
ETRPKRKETLDENKKDNDNDEDLDEVLADDADDFDEEDVRHLPKEQRDPW
WRGRRRRRFWRTIAKPFKHVGNFVKKHHKKIVKGVVAAAKLCRQTRCHRM
IRGKK
Run BLAST on NCBI

transcript from alignment at scaffold_60:1700040..1704098-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071483 ID=TCONS_00071483|Name=TCONS_00071483|organism=Clytia hemisphaerica|type=transcript|length=4059bp|location=Sequence derived from alignment at scaffold_60:1700040..1704098- (Clytia hemisphaerica)
AAAAACAATGAAACGCAAAAAGTATAAGTACCCATCAAATTTTGTCAATT
GGTCATTCAAAAGCAACCTTGGGGAAAAAGTGAACCAATACAGAGCACTG
AAGAACAAAGGAACTAACTTGACTTTTTAAGGTAAGTAAATTGAAACTGT
TTATATTGAACTATTTTGGATAAGCCGAAACCTACTAAACATTTTACAGT
AGAGTCTCTTTAACTCGAACATCTTAACTCGAATGTTTATCATAAACTCG
AACAAGTTTTCTCGCCCCTTTTGTTAACAATGCGTTATAAACCTTATTTC
ATAACTAAAACTTTCCTTGACTCGAATAAATATGTGAACCACGTGAGTGT
TCGAGTTACGGAGACTCAACATATACATAGTGTCCTCCAGGGTTTGTTCC
CCCCACCAAATTCTTGATTTTTTTAAATCTCCCCCCTCTTTTTTTCCCCC
TATGACTTTTCAGTTTTTTAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACTATCGATGTTTTCCCCCTCTTTTTTTCCCCCCTTTACTATTCAAATTT
TCATTTCCCCCCCTCACCCATTCAAAACTGGAAAATTGATTCCCCCCCCC
TTTATAAAGGGGGGGGGAGGACACTATGATATATGAATTGACTCTTTCGG
AAAATTTTTCATTGATATTTCCTATTAATTCTAAAATTTACTCCTTTGGG
TGCTATTGATGCTAAAATTTTGAAGCCTGCTTTTTATTCTCATATGTACT
TGAAGAGGTTTGAACCAACCATCATACTTTTCCCCATTGTCTATGTCCCC
TGAGAGTTAATATTTTCTCTGTTTTATTCCACAGGAAGAAAATGAAGATC
AGTTTGTTGGTTTTAGTGCTGGCAACTCTTGTAGGTTAGTAAAATATCAA
TCTCTATTTAGCTTACACATTTTTTATGTGGCTAAAATTTCAAAGCTTTA
AAACAGGAGCAGCCCATATAAAGTTGTTGGACGGATTTTTCTAAACCATT
TATTGGGCTATTCCATAAAAAAATATTTGTACCCCCTATACCCTATGTTG
AGGAGGTCTTTTTTGGGAAAGGTTTTTTTAATTTTCAGGACCCCCTTGAA
TTTTTTTCCTCATTTCTGGACCACCCTGGATTTTCGACCTCGTTTTACTG
ACCACCCTGAATTTTTCACCCCATTTTACTGTATACCAGACCCCTTTGAA
TTTTTACTTTCCAGACAACCCTTGACAACACCTGTCACACCTTCGCAACA
TATTGAATAGACTATTTTCTGGAATAGCCCATCGGGATGGTAGTGTAATT
TGAAGTGGTGTTTGTTTTTAAAATAAGTGTGTTTCTATGAACAAAAAACT
GATTCATTTATTTTTCAGTTGCTGATCGAGCTTACCGAGATGATATTCGA
GAGTTGAAAAAACTCGATCAAAACATTTTATACGACATGTTGAAAGATAA
ACGATTATACGATCATGTTGATTTTGATGACGAGACGAAAAAATTTCTAA
CCAGCCATTCTAAAGGTAAGTCGTCAGTAATTAAACTATTTATGATTCTG
AGATCATGTTCAGACGTTACGGTTCCGTATCGCTCCGGTATGGTATTTGT
TACGGATAGAAAGTGTTCGTACTGATTTTAGAACGTTTCCAAGCAATGAA
ATGGAGGAGTTCCGTTCCGATGTAAAAAGTGAAGCGAAACCGTTTCGATC
TGTTGTGCCTGTACCGCCCTGCACAAGGGCGTTTTTCATGTCTTGAAAAA
ACTTGCCGCGTATCTTTAGCAATATAAACATTGAACCAAGCTATATCCGC
GATTTATGACCGGAGGTTTTTTTGAAATTGGTACCCGCAAAGAAGCCATT
CTTGTGTTAGAACTTTTCCTTAAGACAAACGGCGCTGCAGCACTAGTCTA
TGAAGTCTACAAGTAAAGGAAGAAGATCTAATAACTTCTAAATAACCTAA
ATAACTTCTTGAGTTCACAAAAAAGCTTCAACCGATGCAAAATAGAACAG
ATTTGCGCTGTCATTCGCCAAAATAAGTTCTCGCCAAAATTAAAAAGATC
GTTCTCTCGCCAAATTAAGTTCTCGACAAAATTTAAAAAAAAATTGAATC
GACCGTTCGTCAAAATTAGTTCTCGCCAAAAAAAGTTCCATTAAGGTATC
TAGCCCATCTTCTGTCGAAAAGTGGCGTATATCTATCCAGTCATTAATGA
AATATCATTTTTATTTTATTTTCAGACGAACTGCGAGATATAATGGATAT
GCTTTCAGCTGATGAAGATGAAGATGAAGACACTGGCGATGATAAAGAAC
TGGAGGAAGAAAAAGGTTAGAAATTGACCCCAACAAAATAATTTTAAGTA
CTTTAACTTTTTTGGTCATATTTTTTTGATGTTGCTTTTCTTTTACGCAA
TAAGCCTGGGAACCTGTTCTGGTCTGGTCTGTAAAATACACAAACAGGTG
GCATTTTTTTGGGTCCTAGATTTAAATCCATTTTTTACCCCTAAACTATA
ATCATGCAAAATCTCGTACTTTTACGCCTTTGTGCACATATTTTACTCAA
CTAGACCGTACTACTTCTCTAAGGTCCCGAATAAATGTCCCCATCCGGTT
ATTCATTTTCAAAATTAAAACATTTTTTCTATCCTATTTTTATAAAGGAT
TAGGAGACAAAGAAATGGAGACTAGACCCAAAAGAAAGGAAACCTTGGAT
GAAAACAAAAAGGATAATGACAATGATGAGGATTTAGATGAAGTTTTAGC
TGACGACGCTGACGATTTCGATGAAGAAGACGTACGACATTTACCTAAAG
AACAACGTGATCCATGGTGGCGTGGACGTCGCCGACGACGATTTTGGAGA
ACAATTGCCAAACCGTTCAAACACGTTGGCAATTTCGTCAAAAAACATCA
CAAAAAGATTGTGAAAGGTGTGGTAGCTGCAGCTAAGTTGTGTAGACAAA
CCAGATGTCACCGTATGATTAGAGGTAAAAAATAAAATGGGTTACAAATA
ATTCCAAACCCCTTCAGTACCCTGCTTGCTCATCATATCTCAATGACGGT
ATACAGGGTTTTTTATAAGAAAATTCAACCTTATTGGATGTTCTTAACTT
TTTTTATTTTTAAGCCTAAAAATATTCTTAATGCATCTTCTTATTTTCCC
CATTTCGTGAGCATTTTTGTCCATTTTCCTTAGAAATCGGATGTTTTCTC
AAAGTCCACAAAGCCTTAAAAATGTTCTTAACTTGTTCTTAACATTCTTG
CTATCGAAGCCTTATGTTCTTATATAGTTTATTCTTATATAAAAAAAATC
TCAATCAAAAGATCAAGCAACCCGTATTATTTAATTTTTATATGTGTAAT
TTTGAATATAAAATATAAGCTGTCAAAAGTCAAATAAGTCATAAAATTCT
GAAATCGACTTTCGTTTGATTATGCTTATGTGAATGATAGCTTATTTCTT
TGTGGGGAATACTTATAATCTTAAAAATTATTTTTTGATAAACTTTTGTA
TTTTTTACATTATTTACATTTTACTATTTTAGATAAAATGAATCTTTAAC
GGAAAACAA

Coding sequence (CDS) from alignment at scaffold_60:1700040..1704098-

>TCONS_00071483 ID=TCONS_00071483|Name=TCONS_00071483|organism=Clytia hemisphaerica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_60:1700040..1704098- (Clytia hemisphaerica)
GATTAGGAGACAAAGAAATGGAGACTAGACCCAAAAGAAAGGAAACCTTG
GATGAAAACAAAAAGGATAATGACAATGATGAGGATTTAGATGAAGTTTT
AGCTGACGACGCTGACGATTTCGATGAAGAAGACGTACGACATTTACCTA
AAGAACAACGTGATCCATGGTGGCGTGGACGTCGCCGACGACGATTTTGG
AGAACAATTGCCAAACCGTTCAAACACGTTGGCAATTTCGTCAAAAAACA
TCACAAAAAGATTGTGAAAGGTGTGGTAGCTGCAGCTAAGTTGTGTAGAC
AAACCAGATGTCACCGTATGATTAGAGGTAAAAAATAAACGAACTGCGAG
ATATAATGGATATGCTTTCAGCTGATGAAGATGAAGATGAAGACACTGGC
GATGATAAAGAACTGGAGGAAGAAAAAGTTGCTGATCGAGCTTACCGAGA
TGATATTCGAGAGTTGAAAAAACTCGATCAAAACATTTTATACGACATGT
TGAAAGATAAACGATTATACGATCATGTTGATTTTGATGACGAGACGAAA
AAATTTCTAACCAGCCATTCTAAAGATGAAGATCAGTTTGTTGGTTTTAG
TGCTGGCAACTCTTGTAGGATTAGGAGACAAAGAAATGGAGACTAGACCC
AAAAGAAAGGAAACCTTGGATGAAAACAAAAAGGATAATGACAATGATGA
GGATTTAGATGAAGTTTTAGCTGACGACGCTGACGATTTCGATGAAGAAG
ACGTACGACATTTACCTAAAGAACAACGTGATCCATGGTGGCGTGGACGT
CGCCGACGACGATTTTGGAGAACAATTGCCAAACCGTTCAAACACGTTGG
CAATTTCGTCAAAAAACATCACAAAAAGATTGTGAAAGGTGTGGTAGCTG
CAGCTAAGTTGTGTAGACAAACCAGATGTCACCGTATGATTAGAGGTAAA
AAATAAACGAACTGCGAGATATAATGGATATGCTTTCAGCTGATGAAGAT
GAAGATGAAGACACTGGCGATGATAAAGAACTGGAGGAAGAAAAAGTTGC
TGATCGAGCTTACCGAGATGATATTCGAGAGTTGAAAAAACTCGATCAAA
ACATTTTATACGACATGTTGAAAGATAAACGATTATACGATCATGTTGAT
TTTGATGACGAGACGAAAAAATTTCTAACCAGCCATTCTAAAGATGAAGA
TCAGTTTGTTGGTTTTAGTGCTGGCAACTCTTGTAGGATTAGGAGACAAA
GAAATGGAGACTAGACCCAAAAGAAAGGAAACCTTGGATGAAAACAAAAA
GGATAATGACAATGATGAGGATTTAGATGAAGTTTTAGCTGACGACGCTG
ACGATTTCGATGAAGAAGACGTACGACATTTACCTAAAGAACAACGTGAT
CCATGGTGGCGTGGACGTCGCCGACGACGATTTTGGAGAACAATTGCCAA
ACCGTTCAAACACGTTGGCAATTTCGTCAAAAAACATCACAAAAAGATTG
TGAAAGGTGTGGTAGCTGCAGCTAAGTTGTGTAGACAAACCAGATGTCAC
CGTATGATTAGAGGTAAAAAATAAACGAACTGCGAGATATAATGGATATG
CTTTCAGCTGATGAAGATGAAGATGAAGACACTGGCGATGATAAAGAACT
GGAGGAAGAAAAAGTTGCTGATCGAGCTTACCGAGATGATATTCGAGAGT
TGAAAAAACTCGATCAAAACATTTTATACGACATGTTGAAAGATAAACGA
TTATACGATCATGTTGATTTTGATGACGAGACGAAAAAATTTCTAACCAG
CCATTCTAAAGATGAAGATCAGTTTGTTGGTTTTAGTGCTGGCAACTCTT
GTAGGATTAGGAGACAAAGAAATGGAGACTAGACCCAAAAGAAAGGAAAC
CTTGGATGAAAACAAAAAGGATAATGACAATGATGAGGATTTAGATGAAG
TTTTAGCTGACGACGCTGACGATTTCGATGAAGAAGACGTACGACATTTA
CCTAAAGAACAACGTGATCCATGGTGGCGTGGACGTCGCCGACGACGATT
TTGGAGAACAATTGCCAAACCGTTCAAACACGTTGGCAATTTCGTCAAAA
AACATCACAAAAAGATTGTGAAAGGTGTGGTAGCTGCAGCTAAGTTGTGT
AGACAAACCAGATGTCACCGTATGATTAGAGGTAAAAAATAAACGAACTG
CGAGATATAATGGATATGCTTTCAGCTGATGAAGATGAAGATGAAGACAC
TGGCGATGATAAAGAACTGGAGGAAGAAAAAGTTGCTGATCGAGCTTACC
GAGATGATATTCGAGAGTTGAAAAAACTCGATCAAAACATTTTATACGAC
ATGTTGAAAGATAAACGATTATACGATCATGTTGATTTTGATGACGAGAC
GAAAAAATTTCTAACCAGCCATTCTAAAGATGAAGATCAGTTTGTTGGTT
TTAGTGCTGGCAACTCTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044384XLOC_044384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071483-exon-scaffold_60-1575043694:1703968..1704098TCONS_00071483-exon-scaffold_60-1575043694:1703968..1704098Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1575043694:1702715..1702764TCONS_00071483-exon-scaffold_60-1575043694:1702715..1702764Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1575043694:1702084..1702230TCONS_00071483-exon-scaffold_60-1575043694:1702084..1702230Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1575043694:1701284..1701373TCONS_00071483-exon-scaffold_60-1575043694:1701284..1701373Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1575043694:1700040..1700951TCONS_00071483-exon-scaffold_60-1575043694:1700040..1700951Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1510915933:1703968..1704098TCONS_00071483-exon-scaffold_60-1510915933:1703968..1704098Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1510915933:1702715..1702764TCONS_00071483-exon-scaffold_60-1510915933:1702715..1702764Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1510915933:1702084..1702230TCONS_00071483-exon-scaffold_60-1510915933:1702084..1702230Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1510915933:1701284..1701373TCONS_00071483-exon-scaffold_60-1510915933:1701284..1701373Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1510915933:1700040..1700951TCONS_00071483-exon-scaffold_60-1510915933:1700040..1700951Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1491911889:1703968..1704098TCONS_00071483-exon-scaffold_60-1491911889:1703968..1704098Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1491911889:1702715..1702764TCONS_00071483-exon-scaffold_60-1491911889:1702715..1702764Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1491911889:1702084..1702230TCONS_00071483-exon-scaffold_60-1491911889:1702084..1702230Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1491911889:1701284..1701373TCONS_00071483-exon-scaffold_60-1491911889:1701284..1701373Clytia hemisphaericaexon
TCONS_00071483-exon-scaffold_60-1491911889:1700040..1700951TCONS_00071483-exon-scaffold_60-1491911889:1700040..1700951Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071483-proteinTCONS_00071483-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1700040..1704098 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.00659	2.71586	2.79504	3.96153	0.597513	0.876874	0.569644	0.533294	0.693405	0.561584	0.384768	0.548017	8.27198	18.0773	0.736809	0.578567	1.40174	1.09582	1226.01	1280.89	0.48959	0.671639	12.0474	7.22479	20.8633	14.2531	17.6622	11.2542	0.87612	1.25262
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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