TCONS_00071424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071424
Unique NameTCONS_00071424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071424 ID=TCONS_00071424|Name=TCONS_00071424|organism=Clytia hemisphaerica|type=transcript|length=979bp
tcactttcattattttattttcagaaattctaaaatccaaagaaaaatag
aataaaactaTACAATGGGAAAGGgacaaagtaaacaaacctttgaAGAA
AATCAATCCAGAGTTGATGGTGGTATTGGAATTGAATGTGAAAATGAGAT
GGAAGAATCTATTAGAGATGTTAAAGctgaggAATATGTTATCAAAACGC
AAGATGAATCTATATCGTACATTGTTTACAACATTcaaaacgaaacaaaa
attgTTCCAGAATCAACCATGGATGCTAACAATATTGTCGTAGAGGAAGT
TGATTATTCTCTGGATAATAACAAAACTCTACCTATTGTTTTCCATTGGG
GGTATGGTGGCAAAGAAGTCTTTCTTTCGGGCTCTTTTTATGAGTGGAAA
AAGAGAGTACCAATGATTAACagTGGTGACGAGTATACAACCACGGTGGA
CCTACCCAGTGGAACACATGAGTTTAAATACATTGTTGATGGCCATTGGC
AACATGACCCTAACCAGAACACAGTGAATGATCATTTTGCTGGTAGAAAC
AACATCTTGACAGTATCTTGACTATCTTAATTCATTCATATTGCGATCAC
ATCTTTATATTCTTTAACTATTTATAACAACAAAAATACACTCCGACAtt
actattttttttaattgcaacTATACCGTTTATTTTTCTCACATTGAGAA
TTGAATTACATTGAGATGTTTTCCGATTTTGTCAAACTTTTAAGAGTTTA
TTCAATTTTCTACCGATTCTTGGtttgtcttcttcttcttcatgatCTTT
CAACATTTTAGGAGTTCTTTTTTATCACGGGGTAATATTAAAACtgaaat
cttttaaatttttatttttattgtatatttttcatACAAGTCTTATTGCa
tataaattgaaattttttaaacaatttttacgaaaaactagaatattttt
taataagaaagtcttatttttatgtAGAG
Run BLAST on NCBI

protein sequence of TCONS_00071424-protein

>TCONS_00071424-protein ID=TCONS_00071424-protein|Name=TCONS_00071424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MGKGQSKQTFEENQSRVDGGIGIECENEMEESIRDVKAEEYVIKTQDESI
SYIVYNIQNETKIVPESTMDANNIVVEEVDYSLDNNKTLPIVFHWGYGGK
EVFLSGSFYEWKKRVPMINSGDEYTTTVDLPSGTHEFKYIVDGHWQHDPN
QNTVNDHFAGRNNILTVS
Run BLAST on NCBI

transcript from alignment at scaffold_60:1333734..1335881-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071424 ID=TCONS_00071424|Name=TCONS_00071424|organism=Clytia hemisphaerica|type=transcript|length=2148bp|location=Sequence derived from alignment at scaffold_60:1333734..1335881- (Clytia hemisphaerica)
TCACTTTCATTATTTTATTTTCAGAAATTCTAAAATCCAAAGAAAAATAG
AATAAAACTATACAATGGGAAAGGGACAAAGTAAACAAACCTTTGAAGAA
AATCAATCCAGAGTTGATGGTGGTATTGGAATTGAATGTGAAAATGAGAT
GGAAGAATCTATTAGAGATGTTAAAGCTGAGGGTAAAAATATTTGTATGT
TTATATTTCATATATAGCAATATGAAATGGATTTTTCTGAGAAAAACCAA
GGTGCCTTATATAAAACAGTAGGTGTAGCTTCTCTGTCTTTAGCTAAAGC
AAAATTATGAGCCATTTTATTTACTTATTAAAATAAATTTACGATATCTG
TGGAAATAAACTGTTCATTCATTTTTATGCTTGTGACTCCAACATGAGAT
TCCAGGTACTTTAGGTTGAATTCTGAATATTTACAAAATTTAAATAAAAC
CCAATGAACAACCAACAAATTTCAAACCCTTAGAGAAAAATCGACCTCTA
AAATAGAGAGCTCTTTTCTGATGAACCCGACAGATGAGTTTAGATTACTT
ACTGGATATGTGTGCTATTCCGTCTAGCAGGTATCTGATACTTAGGAAGA
ATACTTACAGTATAGTAAAGTATAGTACGTTTTCTTTTTAGAATATGTTA
TCAAAACGCAAGATGAATCTATATCGTACATTGTTTACAACATTCAAAAC
GAAACAAAAATTGTTCCAGAATCAACCATGGATGCTAACAATATTGTCGT
AGAGGAAGTTGATTATTCTCTGGATAATAACAAAACTCTACCTATTGTTT
TCCATTGGGGGTATGGTGGCAAAGAAGTCTTTCTTTCGGGCTCTTTTTAT
GAGTGGAAAAAGAGAGTACCAATGATTAACAGGTTTGTTTTGTATTTTAT
GTTTATTCTTGAAGTAATTCATCGAAGAAATCGATTGACCTAGGATGAAC
TCGACTAGTTTTAGTCGAAATAAAGCATTAACCCATTGAAATATAAAGAA
GGAAAATATTCGACTCTTCCATCTGCTTTGAAATGACGAGTTTGGTACTA
TCCGAAGACATGTTTTTATTTCATTTTTCTTCTAGTGGTGACGAGTATAC
AACCACGGTGGACCTACCCAGTGGAACACATGAGTTTAAATACATTGTTG
ATGGCCATTGGCAACATGACCCTAACCAGGTATACAATACTGGTCCTTAA
TTTTCATTTCGCATAACCCTTATGGAGAACGTTTCTGAACGTTCCCAAAT
GTTCCAAATGAGGTAATGATGTCAGCAACTAAAAACAAAGGGTCCATAGG
GTCCACCCCCCAGAAGTTTGAGGGTACCTAAAAAGTGTTAGAAAAGCCAG
GTACCTGGAAGTATTCTTAAATTCAGGGGGTACCTATATGTTTGGAGGTA
GCTGCCAAAAAATTTTTGGGGTTACCAAAATGATTGGGGGTACCTAATAA
TTTTGGGGGTACCTGAACCCTGGAGGACCCTATGCGGATCGTTCTGGAAC
ATTCATGGACGGATTATTTTGGATGATCTTGAACTAGCAAATAAAAGGAA
ACATTCAAAAACGCGACTGTTCGTTCAATTGTGTTCAAATTGGGTGCGAT
GTTACCAAACCACTGTTGTCATTATTTACTTTCAGTCTCGTTTTCGAGAT
TGTTATTGATTTATCTTTCTTTTCTTTACCTTGTAGAACACAGTGAATGA
TCATTTTGCTGGTAGAAACAACATCTTGACAGTATCTTGACTATCTTAAT
TCATTCATATTGCGATCACATCTTTATATTCTTTAACTATTTATAACAAC
AAAAATACACTCCGACATTACTATTTTTTTTAATTGCAACTATACCGTTT
ATTTTTCTCACATTGAGAATTGAATTACATTGAGATGTTTTCCGATTTTG
TCAAACTTTTAAGAGTTTATTCAATTTTCTACCGATTCTTGGTTTGTCTT
CTTCTTCTTCATGATCTTTCAACATTTTAGGAGTTCTTTTTTATCACGGG
GTAATATTAAAACTGAAATCTTTTAAATTTTTATTTTTATTGTATATTTT
TCATACAAGTCTTATTGCATATAAATTGAAATTTTTTAAACAATTTTTAC
GAAAAACTAGAATATTTTTTAATAAGAAAGTCTTATTTTTATGTAGAG

Coding sequence (CDS) from alignment at scaffold_60:1333734..1335881-

>TCONS_00071424 ID=TCONS_00071424|Name=TCONS_00071424|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_60:1333734..1335881- (Clytia hemisphaerica)
AACACAGTGAATGATCATTTTGCTGGTAGAAACAACATCTTGACAGTATC
TTGATGGTGACGAGTATACAACCACGGTGGACCTACCCAGTGGAACACAT
GAGTTTAAATACATTGTTGATGGCCATTGGCAACATGACCCTAACCAGAA
TATGTTATCAAAACGCAAGATGAATCTATATCGTACATTGTTTACAACAT
TCAAAACGAAACAAAAATTGTTCCAGAATCAACCATGGATGCTAACAATA
TTGTCGTAGAGGAAGTTGATTATTCTCTGGATAATAACAAAACTCTACCT
ATTGTTTTCCATTGGGGGTATGGTGGCAAAGAAGTCTTTCTTTCGGGCTC
TTTTTATGAGTGGAAAAAGAGAGTACCAATGATTAACAGATGGGAAAGGG
ACAAAGTAAACAAACCTTTGAAGAAAATCAATCCAGAGTTGATGGTGGTA
TTGGAATTGAATGTGAAAATGAGATGGAAGAATCTATTAGAGATGTTAAA
GCTGAGGAACACAGTGAATGATCATTTTGCTGGTAGAAACAACATCTTGA
CAGTATCTTGATGGTGACGAGTATACAACCACGGTGGACCTACCCAGTGG
AACACATGAGTTTAAATACATTGTTGATGGCCATTGGCAACATGACCCTA
ACCAGAATATGTTATCAAAACGCAAGATGAATCTATATCGTACATTGTTT
ACAACATTCAAAACGAAACAAAAATTGTTCCAGAATCAACCATGGATGCT
AACAATATTGTCGTAGAGGAAGTTGATTATTCTCTGGATAATAACAAAAC
TCTACCTATTGTTTTCCATTGGGGGTATGGTGGCAAAGAAGTCTTTCTTT
CGGGCTCTTTTTATGAGTGGAAAAAGAGAGTACCAATGATTAACAGATGG
GAAAGGGACAAAGTAAACAAACCTTTGAAGAAAATCAATCCAGAGTTGAT
GGTGGTATTGGAATTGAATGTGAAAATGAGATGGAAGAATCTATTAGAGA
TGTTAAAGCTGAGGAACACAGTGAATGATCATTTTGCTGGTAGAAACAAC
ATCTTGACAGTATCTTGATGGTGACGAGTATACAACCACGGTGGACCTAC
CCAGTGGAACACATGAGTTTAAATACATTGTTGATGGCCATTGGCAACAT
GACCCTAACCAGAATATGTTATCAAAACGCAAGATGAATCTATATCGTAC
ATTGTTTACAACATTCAAAACGAAACAAAAATTGTTCCAGAATCAACCAT
GGATGCTAACAATATTGTCGTAGAGGAAGTTGATTATTCTCTGGATAATA
ACAAAACTCTACCTATTGTTTTCCATTGGGGGTATGGTGGCAAAGAAGTC
TTTCTTTCGGGCTCTTTTTATGAGTGGAAAAAGAGAGTACCAATGATTAA
CAGATGGGAAAGGGACAAAGTAAACAAACCTTTGAAGAAAATCAATCCAG
AGTTGATGGTGGTATTGGAATTGAATGTGAAAATGAGATGGAAGAATCTA
TTAGAGATGTTAAAGCTGAGGAACACAGTGAATGATCATTTTGCTGGTAG
AAACAACATCTTGACAGTATCTTGATGGTGACGAGTATACAACCACGGTG
GACCTACCCAGTGGAACACATGAGTTTAAATACATTGTTGATGGCCATTG
GCAACATGACCCTAACCAGAATATGTTATCAAAACGCAAGATGAATCTAT
ATCGTACATTGTTTACAACATTCAAAACGAAACAAAAATTGTTCCAGAAT
CAACCATGGATGCTAACAATATTGTCGTAGAGGAAGTTGATTATTCTCTG
GATAATAACAAAACTCTACCTATTGTTTTCCATTGGGGGTATGGTGGCAA
AGAAGTCTTTCTTTCGGGCTCTTTTTATGAGTGGAAAAAGAGAGTACCAA
TGATTAACAGATGGGAAAGGGACAAAGTAAACAAACCTTTGAAGAAAATC
AATCCAGAGTTGATGGTGGTATTGGAATTGAATGTGAAAATGAGATGGAA
GAATCTATTAGAGATGTTAAAGCTGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044367XLOC_044367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071424-exon-scaffold_60-1575043694:1335700..1335881TCONS_00071424-exon-scaffold_60-1575043694:1335700..1335881Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1575043694:1335000..1335240TCONS_00071424-exon-scaffold_60-1575043694:1335000..1335240Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1575043694:1334703..1334796TCONS_00071424-exon-scaffold_60-1575043694:1334703..1334796Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1575043694:1333734..1334195TCONS_00071424-exon-scaffold_60-1575043694:1333734..1334195Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1510915933:1335700..1335881TCONS_00071424-exon-scaffold_60-1510915933:1335700..1335881Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1510915933:1335000..1335240TCONS_00071424-exon-scaffold_60-1510915933:1335000..1335240Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1510915933:1334703..1334796TCONS_00071424-exon-scaffold_60-1510915933:1334703..1334796Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1510915933:1333734..1334195TCONS_00071424-exon-scaffold_60-1510915933:1333734..1334195Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1491911889:1335700..1335881TCONS_00071424-exon-scaffold_60-1491911889:1335700..1335881Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1491911889:1335000..1335240TCONS_00071424-exon-scaffold_60-1491911889:1335000..1335240Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1491911889:1334703..1334796TCONS_00071424-exon-scaffold_60-1491911889:1334703..1334796Clytia hemisphaericaexon
TCONS_00071424-exon-scaffold_60-1491911889:1333734..1334195TCONS_00071424-exon-scaffold_60-1491911889:1333734..1334195Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071424-proteinTCONS_00071424-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1333734..1335881 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61262	1.4827	1.14771	1.17389	186.528	134.779	37.2599	37.9878	21.8205	20.3433	23.1067	11.7219	9.13162	9.54693	29.878	37.8475	7.29814	7.83487	4.604	4.71525	2.53923	2.15116	10.6186	8.64521	5.63943	4.32666	5.87555	2.83186	9.51197	11.7232
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR032640AMPK1_CBM
IPR014756Ig_E-set
Blast
[Close]
BLAST of TCONS_00071424 vs. Swiss-Prot (Human)
Match: AAKB2 (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.157e-19
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2 
Query:  320 NKTLPIVFHWGYGGKEVFLSGSFYEWKKRVPMINSGDEYTTTVDLPSGTHEFKYIVDGHWQHDPNQNTVNDHFAGRNNILTV 565
             +  P V  W  GGKEVF+SGSF  W  ++P+I S +++   +DLP G H++K+ VDG W HDP++  V       NN++ V
Sbjct:   74 QQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHV 155
The following BLAST results are available for this feature:
BLAST of TCONS_00071424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AAKB23.157e-1941.465'-AMP-activated protein kinase subunit beta-2 OS=... [more]
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