TCONS_00071380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071380
Unique NameTCONS_00071380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071380 ID=TCONS_00071380|Name=TCONS_00071380|organism=Clytia hemisphaerica|type=transcript|length=1268bp
TAGATGCACTGGCATATGCAAGTACAAATATTCCTTTGGTACTTCATTTT
TCTACCTTACTTCACTGCTCAATGATGTTTTATCGATTGTATTTATTCCC
TTTTATTTACTTCCTTTTAATATCTTatataatttagaaaattacaaaac
aaaaatggtgaaGCTTTTTGCTATTGAACTATTTTACAAATCAGGAAAAG
TCAAGGAGTTGAAATCAGCTCATGATCTGCAATCATTTGGATATTTTCAA
AGAAGCAGTGTACGAGAATTCATGGATTTTACTGGCAAAATTATTGTTGA
AAGAACATCAGCTGGACAAAGAGCTTCAGTTTCAGAACAAGAATACTTGT
GTCATGTGTTTGTCGGAGGAGATGGTTTAAGTGGCGTGGCTATCACAGAT
AAAGAATACAATCAAAGAGTGGCATTCAATATGttaaataaaattttaga
agaattcaaaaaacaagtaCCTTCTGCACAATATATGAACCAAGACCCAA
GCACGTATAATTTCACACTATGCCAATCATATCTCGAAAAATATCAGAAT
CCAAGCGAAGCAGATCCAATGATGAAAGTACAAAGTGAACTGGACGACAC
AAAAATTATCATGTACGAAACGATAGAAAAAGTGTTACAGAGAGGGGAGA
AGATTGACGATTTGGTTGCAAAATCTGAAGGACTCAGTATGGGCTCCAAG
ACATTCTACAAAACGgcaaaaaagacAAACGCTTGTTGCAGCTGGTAGAC
ATGGAATTACGGTTAAATTTGGATCGGTGCAAATTTTAGGCTCTTCTTTT
TGTTAGAACATCAAAAGCTGAATTTTATATTGAGATAaggatttgaaaaa
agaatacgaaaaaaaaaattatcatggATTCTCGTGCCTTTTTTGCTAAA
GCCTGATTCAAGATTCTTTCACAAGGTAATTTAGAAACCATACCCGAAAT
CGGGATAAATTATGttgattttttgtccatttgGTTAGTTTAATATCAGc
atcaaaacagaaaattcttctttttctagAAATCATAAACgtaaagaaaa
tattgatttatttatcgtttattttttatgtttgaaatttttattcttca
atatttttatgTTAAAATAGCGATAAATTTTTGGTAATTTGTTTTGGGCA
CCCTACCCAAATAGTAATATAAATTTTGATAGACGAGCTAAGACTCCTGT
CGTCCCAAATAaatcaaaatgtaaaaaaatagcTGCAAGGTTCACTTTAG
GCTCACTTAAGCTTTGTC
Run BLAST on NCBI

protein sequence of TCONS_00071380-protein

>TCONS_00071380-protein ID=TCONS_00071380-protein|Name=TCONS_00071380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
RCTGICKYKYSFGTSFFYLTSLLNDVLSIVFIPFYLLPFNILYNLENYKT
KMVKLFAIELFYKSGKVKELKSAHDLQSFGYFQRSSVREFMDFTGKIIVE
RTSAGQRASVSEQEYLCHVFVGGDGLSGVAITDKEYNQRVAFNMLNKILE
EFKKQVPSAQYMNQDPSTYNFTLCQSYLEKYQNPSEADPMMKVQSELDDT
KIIMYETIEKVLQRGEKIDDLVAKSEGLSMGSKTFYKTAKKTNACCSW
Run BLAST on NCBI

transcript from alignment at scaffold_60:989698..994754-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071380 ID=TCONS_00071380|Name=TCONS_00071380|organism=Clytia hemisphaerica|type=transcript|length=5057bp|location=Sequence derived from alignment at scaffold_60:989698..994754- (Clytia hemisphaerica)
TAGATGCACTGGCATATGCAAGTACAAATATTCCTTTGGTACTTCATTTT
TCTACCTTACTTCACTGCTCAATGATGTTTTATCGATTGTATTTATTCCC
TTTTATTTACTTCCTTTTAATATCTTATATAATTTAGAAAATTACAAAAC
AAAAATGGTGAAGCTTTTTGCTATTGAACTATTTTACAAATCAGGAAAAG
TCAAGGAGTTGAAATCAGCTCATGATCTGCAATCATTTGGATATTTTCAA
AGAAGCAGGTAGAAAGTCGTAGTTTTTTTCAAAAATATTGGGGTTTCTCA
AAGCAATGGTAAAAAAGTAAAATTTTATGTTCGTTTTTATATCATAGCGT
CAGCCTGGGTTTAGGTCCCACTCTCAGGCAAAAATTAGGTCCCCCCAAAG
ATTTATGAATTTTTTGTTTGCCCCCAGGACCTTTGACCCTAGACACTTTC
AAAAAATTGTTCCAGTAAAAAAGGGTATTCCAATGTAAATTGCGTTCAGT
TCTAAGTTTAAGATAAAATATTTTACACACTTTTTATTAAAATATTGCGC
GGCAGGCGAAAATTTTCCAGATTCACGTGCTGAATTATTTTAGCCCTCAC
GTTAAGTGATGAGATTTTAGCTCCCCCAAATTACATAGGTCCACCCAAAA
AAGTGGTGTACTTCCAGCCCCCTCCTTTTTTGGGAAAACTTTTGGGTGTA
CCCCCCCCCAACTAGCAGGGGGGCTGACGCTCTGTATATGTTCACCTCTT
TTGCATTCATTCATTCTTAAAAGATATTTCTATTTTTTTTCATCCCCCTA
CCAGTGTACGAGAATTCATGGATTTTACTGGCAAAATTATTGTTGAAAGA
ACATCAGCTGGACAAAGAGCTTCAGTTTCAGAACAAGGTAAACTATACAA
TTGTGTACCCTTTTAAGGTTTTAAATTTTTTAAGATTTTTAGCTTTTTTA
AGAAAATGAGGGCTTCTAATATTTAGTTATCACAAGAAACTATATTGAAA
GCAATTCTCATTCAAAGGTAAAAAGTTTAGGCAATGCGCCCCAAATTTCT
AAGTTTCTTTAACTTAAGAACTGAGATTCTTCGCTTTCAAAAGGTTACCA
AACTCATTTTGCTGGGTCTTTACATTGAGTGGCTTTTAAGAAAGTTTGGT
ATCCCTCTTTTATACTTAAAGCGTTATTTTCTAACCCAGATTAAATGATA
AAAGGTCAGACTTTTGGGAAAGGGTTGCATTTTGCAGTAACAGGGTCAGT
CATAAGGAGTGATTGATAAATTCTTGTTTCTTGTATGTTTCAGAATACTT
GTGTCATGTGTTTGTCGGAGGAGATGGTTTAAGTGGCGTGGCTATCACAG
ATAAAGAATACAATCAAAGAGTGGCATTCAATATGTTAAATAAAGTATAC
ATAATTCGCTAAATTTTGGAGATAATAATCCGCATTTCTGTATATTGTGA
GGTATGAGATTCGAAGATAAGACATTTCATTTACAGTATTTTCAGAAATA
TTAGTTTTTTTGTTTGGACTTTCGAATTCTTTTTTTACAGAATACAGTTT
ACAATTATTTCACTGATAATGCTCTTTTTCCTAAATTTTCAGATTTTAGA
AGAATTCAAAAAACAAGTACCTTCTGCACAATATATGAACCAAGACCCAA
GGTTTGAATTCTGTACATTCTAACAAGTTATATTTCAACGAGTGAATATA
CTAGACTATTCCTTATATTCGTTTACCTGTAACATCAAATTCTCTTGATT
TTCTCACTCGTCAACGTTCAATGGCATAAAAATCTATTATTATTTCTATT
TGTTTCTTTAGCACGTATAATTTCACACTATGCCAATCATATCTCGAAAA
ATATCAGGTGAGGTTATTTTTCTATTGAGCTGAATACCATGTCCTTTTTC
GAAAAAATCGTTATTGAATTTGGACTGATGGATTCCATTGTCGATTGTCG
ACTGGTTTACATTATTCGATTGTATAAATTCGATTGAGATAAATTTCTGT
TGAGCTTATAAAGTACCTGACTTTTTCTGAAATTTCTTTAATTGGAGATT
TAACACAAGAAAATTATTTCCGCTTTTGCCTATGATATTTTATGCAAAAA
ATCAATTTTGAAAGATCAATGGTTTTCCTGGAATCCTCATTATTTTTTAT
GGAAACTTTTTTCTCAGAATCCAAGCGAAGCAGATCCAATGATGAAAGTA
CAAAGTGAACTGGACGACACAAAAATTATCATGGTATGGTTCACTTCACT
ATGGTTTAAAAAAGATTTTATCTTTACATAAGTGTTTCCGTTTCATATCA
GACACATATTTCATATCAGGACAGTGTCTTGCTATTGTTATATTATGCTG
ATATATAAGGGAAAAAATGTTTTTCTTTTTCTCTTTCTGACCAATCTTGC
TCCACATACGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATCGAT
GAGTGATCCCAATCAAAAATAAACACCTGTTTTGTGACATTTTTACTGTC
AGCCACTAAATTGACCATAACTTGGAGAAATTATGTGGCTTACACTTAGG
ATTGTTTGATGGTTAAGCTGAGGAAATTAGCTATCCATTGCATAAAGGGC
GAATTTTTGTGGCTTACTTAAAGGGGAGTTGCAAGCAAATGAAGTGTGGG
CAAAAAATGTGGCTTACTGGTCATGTGGCTTACCCTACCAAGAAATTTTA
AAGGCTCAGTTCTCAATAATGGAAACAGTCAGAAATATACTTTCTTTGCC
AGCAAAGGGCTAATTTTTTCATTAGCTGCACTGATTTGTGGCTTACAGTT
TGTTAAGTTGGCAAAAATGTGGTTTACACAAGGGAAATAGAGGTGAATAG
GTGAATATGTAAAATATAGGTGAAATTTTATGTCTCACATTTTTTAAGTT
TTTGGCACTCAATCATTAAAGTATAACACCAGTAGGTGCAAAAAATTACA
AAAATTTTGTTGTAAGTACAATTTTGTGGTCACATTAAAAATTATGGGAA
AGTAAGCCACCAAAAAGTACATTTAAAAGCTAGAAAGTAGCACATTTAAC
ATTTTTAATTCAACCTTTCCTCTGTCAAGGTAATAAAGTCCCATTCTAAG
ATCTTTTATCTAATTTGTGTGGCTTACATTTCTAAAAAAGATACAAATTT
TGATTTGAAGCCACATTTTTAGCCCAATTAACGGAAAAAATTATTCATAA
TGTCTTAGTATTTCCCACAACATTGTAAAATTTCAAGACTTATCGATTAA
GACTTCATCATCTATGACAAAAAGTTGTTTTTTGGGAATTTTTCAAAATG
TCACACTATTTTTTATTGGGATCTAGTAAGCAAACTATATCACTCTTATT
TAAAAACAAAACCTTTAAGGGGTAGGGTAGTCACCAACTGTGACAGGTAG
CACGTGATTCTTTGTCCATGACTTTCCAAAGGTATATTGTAGGAAATCTC
TTTCTCCCTTGAAATTTGATCTTTACTTTACCTTTCCTTATTTTTGTTTG
CTGAGGTAGAGTTCTTTAATCGGGTGAAAGTGCCATCCCATAATTCCTTG
GTAAGATTGGCGAAGGATTTTTAACCCCACGATCTGCTCTTAAGACTATG
AGCGCTTTTGTATAATTTGAAAGCGATTGCTTTGTTTGTCCTGTTGTCGC
TTTTTGTAACATATTTACATTTTTCATTGATTTTAAGTACGAAACGATAG
AAAAAGTGTTACAGAGAGGGGAGAAGATTGACGATTTGGTTGCAAAATCT
GAAGGACTCAGTATGGGCTCCAAGACATTCTACAAAACGGTAATACATAC
TGAACTCCATTTTAATCTCCGTAATTCAAGATGGTAATATAATAAATGCG
ATTTCAAAATCTAGCTTTTAGCGATACTCTTATTCCTTGCTATAATATTT
TTTCCCCAACGAAGAGCGGTCCTTAATTTATGTTACAAATATTTTGTAAG
TGTTGTTCATATAAAAAAAGTCCCTTGTTGATTACACCAAGTAGAAAAAA
TTTTTAAGTTTTTTTAAACACTTCTAATAGTTTAAACATACTAGAATAAC
GGCTAGTATCCATAAAGATTTCAAAAGCGGGATATATCGTATCCGATAAC
GTAACCGCTGCCTAACCTCGACCGGGCAAAGAAAAATTCTTCAAAGATTC
GAGTTAAGACCTTTAGACCTCAATTTAAAAAAAATTACTTTTTTAATGAA
TTTTGAGAAAATTTACTCATTCTATCTAAAATTTCATTAATACAATTTGA
GAAGTCAAAAATTATTACCCCCAAATATGACCAGATCTTCAAACAAGAAG
AGGTTTGAAAGTGTATATCTGTTTCCGTACCCCCGTCTTCAAAGCAGAGA
AAGGCTAGGATTGCCGATCCCAGCTAAAACCCTATACAGACGGCGCTATA
TCATTTAGGTACGCTTTCAGATACGATATAACCTTCTCTTTTCAAAAGGC
AAACTTAAGATAACTTAGAAACAAATTTATCATTGGGTTTATTTCATTTT
TCAGGCAAAAAAGACAAACGCTTGTTGCAGCTGGTAGACATGGAATTACG
GTTAAATTTGGATCGGTGCAAATTTTAGGCTCTTCTTTTTGTTAGAACAT
CAAAAGCTGAATTTTATATTGAGATAAGGATTTGAAAAAAGAATACGAAA
AAAAAAATTATCATGGATTCTCGTGCCTTTTTTGCTAAAGCCTGATTCAA
GATTCTTTCACAAGGTAATTTAGAAACCATACCCGAAATCGGGATAAATT
ATGTTGATTTTTTGTCCATTTGGTTAGTTTAATATCAGCATCAAAACAGA
AAATTCTTCTTTTTCTAGAAATCATAAACGTAAAGAAAATATTGATTTAT
TTATCGTTTATTTTTTATGTTTGAAATTTTTATTCTTCAATATTTTTATG
TTAAAATAGCGATAAATTTTTGGTAATTTGTTTTGGGCACCCTACCCAAA
TAGTAATATAAATTTTGATAGACGAGCTAAGACTCCTGTCGTCCCAAATA
AATCAAAATGTAAAAAAATAGCTGCAAGGTTCACTTTAGGCTCACTTAAG
CTTTGTC

Coding sequence (CDS) from alignment at scaffold_60:989698..994754-

>TCONS_00071380 ID=TCONS_00071380|Name=TCONS_00071380|organism=Clytia hemisphaerica|type=CDS|length=5976bp|location=Sequence derived from alignment at scaffold_60:989698..994754- (Clytia hemisphaerica)
GCAAAAAAGACAAACGCTTGTTGCAGCTGGTAGTACGAAACGATAGAAAA
AGTGTTACAGAGAGGGGAGAAGATTGACGATTTGGTTGCAAAATCTGAAG
GACTCAGTATGGGCTCCAAGACATTCTACAAAACGAATCCAAGCGAAGCA
GATCCAATGATGAAAGTACAAAGTGAACTGGACGACACAAAAATTATCAT
GCACGTATAATTTCACACTATGCCAATCATATCTCGAAAAATATCAGATT
TTAGAAGAATTCAAAAAACAAGTACCTTCTGCACAATATATGAACCAAGA
CCCAAGAATACTTGTGTCATGTGTTTGTCGGAGGAGATGGTTTAAGTGGC
GTGGCTATCACAGATAAAGAATACAATCAAAGAGTGGCATTCAATATGTT
AAATAAATGTACGAGAATTCATGGATTTTACTGGCAAAATTATTGTTGAA
AGAACATCAGCTGGACAAAGAGCTTCAGTTTCAGAACAAGAGATGCACTG
GCATATGCAAGTACAAATATTCCTTTGGTACTTCATTTTTCTACCTTACT
TCACTGCTCAATGATGTTTTATCGATTGTATTTATTCCCTTTTATTTACT
TCCTTTTAATATCTTATATAATTTAGAAAATTACAAAACAAAAATGGTGA
AGCTTTTTGCTATTGAACTATTTTACAAATCAGGAAAAGTCAAGGAGTTG
AAATCAGCTCATGATCTGCAATCATTTGGATATTTTCAAAGAAGCAGGCA
AAAAAGACAAACGCTTGTTGCAGCTGGTAGTACGAAACGATAGAAAAAGT
GTTACAGAGAGGGGAGAAGATTGACGATTTGGTTGCAAAATCTGAAGGAC
TCAGTATGGGCTCCAAGACATTCTACAAAACGAATCCAAGCGAAGCAGAT
CCAATGATGAAAGTACAAAGTGAACTGGACGACACAAAAATTATCATGCA
CGTATAATTTCACACTATGCCAATCATATCTCGAAAAATATCAGATTTTA
GAAGAATTCAAAAAACAAGTACCTTCTGCACAATATATGAACCAAGACCC
AAGAATACTTGTGTCATGTGTTTGTCGGAGGAGATGGTTTAAGTGGCGTG
GCTATCACAGATAAAGAATACAATCAAAGAGTGGCATTCAATATGTTAAA
TAAATGTACGAGAATTCATGGATTTTACTGGCAAAATTATTGTTGAAAGA
ACATCAGCTGGACAAAGAGCTTCAGTTTCAGAACAAGAGATGCACTGGCA
TATGCAAGTACAAATATTCCTTTGGTACTTCATTTTTCTACCTTACTTCA
CTGCTCAATGATGTTTTATCGATTGTATTTATTCCCTTTTATTTACTTCC
TTTTAATATCTTATATAATTTAGAAAATTACAAAACAAAAATGGTGAAGC
TTTTTGCTATTGAACTATTTTACAAATCAGGAAAAGTCAAGGAGTTGAAA
TCAGCTCATGATCTGCAATCATTTGGATATTTTCAAAGAAGCAGGCAAAA
AAGACAAACGCTTGTTGCAGCTGGTAGTACGAAACGATAGAAAAAGTGTT
ACAGAGAGGGGAGAAGATTGACGATTTGGTTGCAAAATCTGAAGGACTCA
GTATGGGCTCCAAGACATTCTACAAAACGAATCCAAGCGAAGCAGATCCA
ATGATGAAAGTACAAAGTGAACTGGACGACACAAAAATTATCATGCACGT
ATAATTTCACACTATGCCAATCATATCTCGAAAAATATCAGATTTTAGAA
GAATTCAAAAAACAAGTACCTTCTGCACAATATATGAACCAAGACCCAAG
AATACTTGTGTCATGTGTTTGTCGGAGGAGATGGTTTAAGTGGCGTGGCT
ATCACAGATAAAGAATACAATCAAAGAGTGGCATTCAATATGTTAAATAA
ATGTACGAGAATTCATGGATTTTACTGGCAAAATTATTGTTGAAAGAACA
TCAGCTGGACAAAGAGCTTCAGTTTCAGAACAAGAGATGCACTGGCATAT
GCAAGTACAAATATTCCTTTGGTACTTCATTTTTCTACCTTACTTCACTG
CTCAATGATGTTTTATCGATTGTATTTATTCCCTTTTATTTACTTCCTTT
TAATATCTTATATAATTTAGAAAATTACAAAACAAAAATGGTGAAGCTTT
TTGCTATTGAACTATTTTACAAATCAGGAAAAGTCAAGGAGTTGAAATCA
GCTCATGATCTGCAATCATTTGGATATTTTCAAAGAAGCAGGCAAAAAAG
ACAAACGCTTGTTGCAGCTGGTAGTACGAAACGATAGAAAAAGTGTTACA
GAGAGGGGAGAAGATTGACGATTTGGTTGCAAAATCTGAAGGACTCAGTA
TGGGCTCCAAGACATTCTACAAAACGAATCCAAGCGAAGCAGATCCAATG
ATGAAAGTACAAAGTGAACTGGACGACACAAAAATTATCATGCACGTATA
ATTTCACACTATGCCAATCATATCTCGAAAAATATCAGATTTTAGAAGAA
TTCAAAAAACAAGTACCTTCTGCACAATATATGAACCAAGACCCAAGAAT
ACTTGTGTCATGTGTTTGTCGGAGGAGATGGTTTAAGTGGCGTGGCTATC
ACAGATAAAGAATACAATCAAAGAGTGGCATTCAATATGTTAAATAAATG
TACGAGAATTCATGGATTTTACTGGCAAAATTATTGTTGAAAGAACATCA
GCTGGACAAAGAGCTTCAGTTTCAGAACAAGAGATGCACTGGCATATGCA
AGTACAAATATTCCTTTGGTACTTCATTTTTCTACCTTACTTCACTGCTC
AATGATGTTTTATCGATTGTATTTATTCCCTTTTATTTACTTCCTTTTAA
TATCTTATATAATTTAGAAAATTACAAAACAAAAATGGTGAAGCTTTTTG
CTATTGAACTATTTTACAAATCAGGAAAAGTCAAGGAGTTGAAATCAGCT
CATGATCTGCAATCATTTGGATATTTTCAAAGAAGCAGGCAAAAAAGACA
AACGCTTGTTGCAGCTGGTAGTACGAAACGATAGAAAAAGTGTTACAGAG
AGGGGAGAAGATTGACGATTTGGTTGCAAAATCTGAAGGACTCAGTATGG
GCTCCAAGACATTCTACAAAACGAATCCAAGCGAAGCAGATCCAATGATG
AAAGTACAAAGTGAACTGGACGACACAAAAATTATCATGCACGTATAATT
TCACACTATGCCAATCATATCTCGAAAAATATCAGATTTTAGAAGAATTC
AAAAAACAAGTACCTTCTGCACAATATATGAACCAAGACCCAAGAATACT
TGTGTCATGTGTTTGTCGGAGGAGATGGTTTAAGTGGCGTGGCTATCACA
GATAAAGAATACAATCAAAGAGTGGCATTCAATATGTTAAATAAATGTAC
GAGAATTCATGGATTTTACTGGCAAAATTATTGTTGAAAGAACATCAGCT
GGACAAAGAGCTTCAGTTTCAGAACAAGAGATGCACTGGCATATGCAAGT
ACAAATATTCCTTTGGTACTTCATTTTTCTACCTTACTTCACTGCTCAAT
GATGTTTTATCGATTGTATTTATTCCCTTTTATTTACTTCCTTTTAATAT
CTTATATAATTTAGAAAATTACAAAACAAAAATGGTGAAGCTTTTTGCTA
TTGAACTATTTTACAAATCAGGAAAAGTCAAGGAGTTGAAATCAGCTCAT
GATCTGCAATCATTTGGATATTTTCAAAGAAGCAGGCAAAAAAGACAAAC
GCTTGTTGCAGCTGGTAGTACGAAACGATAGAAAAAGTGTTACAGAGAGG
GGAGAAGATTGACGATTTGGTTGCAAAATCTGAAGGACTCAGTATGGGCT
CCAAGACATTCTACAAAACGAATCCAAGCGAAGCAGATCCAATGATGAAA
GTACAAAGTGAACTGGACGACACAAAAATTATCATGCACGTATAATTTCA
CACTATGCCAATCATATCTCGAAAAATATCAGATTTTAGAAGAATTCAAA
AAACAAGTACCTTCTGCACAATATATGAACCAAGACCCAAGAATACTTGT
GTCATGTGTTTGTCGGAGGAGATGGTTTAAGTGGCGTGGCTATCACAGAT
AAAGAATACAATCAAAGAGTGGCATTCAATATGTTAAATAAATGTACGAG
AATTCATGGATTTTACTGGCAAAATTATTGTTGAAAGAACATCAGCTGGA
CAAAGAGCTTCAGTTTCAGAACAAGAGATGCACTGGCATATGCAAGTACA
AATATTCCTTTGGTACTTCATTTTTCTACCTTACTTCACTGCTCAATGAT
GTTTTATCGATTGTATTTATTCCCTTTTATTTACTTCCTTTTAATATCTT
ATATAATTTAGAAAATTACAAAACAAAAATGGTGAAGCTTTTTGCTATTG
AACTATTTTACAAATCAGGAAAAGTCAAGGAGTTGAAATCAGCTCATGAT
CTGCAATCATTTGGATATTTTCAAAGAAGCAGGCAAAAAAGACAAACGCT
TGTTGCAGCTGGTAGTACGAAACGATAGAAAAAGTGTTACAGAGAGGGGA
GAAGATTGACGATTTGGTTGCAAAATCTGAAGGACTCAGTATGGGCTCCA
AGACATTCTACAAAACGAATCCAAGCGAAGCAGATCCAATGATGAAAGTA
CAAAGTGAACTGGACGACACAAAAATTATCATGCACGTATAATTTCACAC
TATGCCAATCATATCTCGAAAAATATCAGATTTTAGAAGAATTCAAAAAA
CAAGTACCTTCTGCACAATATATGAACCAAGACCCAAGAATACTTGTGTC
ATGTGTTTGTCGGAGGAGATGGTTTAAGTGGCGTGGCTATCACAGATAAA
GAATACAATCAAAGAGTGGCATTCAATATGTTAAATAAATGTACGAGAAT
TCATGGATTTTACTGGCAAAATTATTGTTGAAAGAACATCAGCTGGACAA
AGAGCTTCAGTTTCAGAACAAGAGATGCACTGGCATATGCAAGTACAAAT
ATTCCTTTGGTACTTCATTTTTCTACCTTACTTCACTGCTCAATGATGTT
TTATCGATTGTATTTATTCCCTTTTATTTACTTCCTTTTAATATCTTATA
TAATTTAGAAAATTACAAAACAAAAATGGTGAAGCTTTTTGCTATTGAAC
TATTTTACAAATCAGGAAAAGTCAAGGAGTTGAAATCAGCTCATGATCTG
CAATCATTTGGATATTTTCAAAGAAGCAGGCAAAAAAGACAAACGCTTGT
TGCAGCTGGTAGTACGAAACGATAGAAAAAGTGTTACAGAGAGGGGAGAA
GATTGACGATTTGGTTGCAAAATCTGAAGGACTCAGTATGGGCTCCAAGA
CATTCTACAAAACGAATCCAAGCGAAGCAGATCCAATGATGAAAGTACAA
AGTGAACTGGACGACACAAAAATTATCATGCACGTATAATTTCACACTAT
GCCAATCATATCTCGAAAAATATCAGATTTTAGAAGAATTCAAAAAACAA
GTACCTTCTGCACAATATATGAACCAAGACCCAAGAATACTTGTGTCATG
TGTTTGTCGGAGGAGATGGTTTAAGTGGCGTGGCTATCACAGATAAAGAA
TACAATCAAAGAGTGGCATTCAATATGTTAAATAAATGTACGAGAATTCA
TGGATTTTACTGGCAAAATTATTGTTGAAAGAACATCAGCTGGACAAAGA
GCTTCAGTTTCAGAACAAGAGATGCACTGGCATATGCAAGTACAAATATT
CCTTTGGTACTTCATTTTTCTACCTTACTTCACTGCTCAATGATGTTTTA
TCGATTGTATTTATTCCCTTTTATTTACTTCCTTTTAATATCTTATATAA
TTTAGAAAATTACAAAACAAAAATGGTGAAGCTTTTTGCTATTGAACTAT
TTTACAAATCAGGAAAAGTCAAGGAGTTGAAATCAGCTCATGATCTGCAA
TCATTTGGATATTTTCAAAGAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044357XLOC_044357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071380-exon-scaffold_60-1575043694:994497..994754TCONS_00071380-exon-scaffold_60-1575043694:994497..994754Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1575043694:993868..993950TCONS_00071380-exon-scaffold_60-1575043694:993868..993950Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1575043694:993361..993461TCONS_00071380-exon-scaffold_60-1575043694:993361..993461Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1575043694:993104..993162TCONS_00071380-exon-scaffold_60-1575043694:993104..993162Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1575043694:992898..992943TCONS_00071380-exon-scaffold_60-1575043694:992898..992943Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1575043694:992522..992587TCONS_00071380-exon-scaffold_60-1575043694:992522..992587Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1575043694:990966..991067TCONS_00071380-exon-scaffold_60-1575043694:990966..991067Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1575043694:989698..990250TCONS_00071380-exon-scaffold_60-1575043694:989698..990250Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1510915933:994497..994754TCONS_00071380-exon-scaffold_60-1510915933:994497..994754Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1510915933:993868..993950TCONS_00071380-exon-scaffold_60-1510915933:993868..993950Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1510915933:993361..993461TCONS_00071380-exon-scaffold_60-1510915933:993361..993461Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1510915933:993104..993162TCONS_00071380-exon-scaffold_60-1510915933:993104..993162Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1510915933:992898..992943TCONS_00071380-exon-scaffold_60-1510915933:992898..992943Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1510915933:992522..992587TCONS_00071380-exon-scaffold_60-1510915933:992522..992587Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1510915933:990966..991067TCONS_00071380-exon-scaffold_60-1510915933:990966..991067Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1510915933:989698..990250TCONS_00071380-exon-scaffold_60-1510915933:989698..990250Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1491911889:994497..994754TCONS_00071380-exon-scaffold_60-1491911889:994497..994754Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1491911889:993868..993950TCONS_00071380-exon-scaffold_60-1491911889:993868..993950Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1491911889:993361..993461TCONS_00071380-exon-scaffold_60-1491911889:993361..993461Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1491911889:993104..993162TCONS_00071380-exon-scaffold_60-1491911889:993104..993162Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1491911889:992898..992943TCONS_00071380-exon-scaffold_60-1491911889:992898..992943Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1491911889:992522..992587TCONS_00071380-exon-scaffold_60-1491911889:992522..992587Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1491911889:990966..991067TCONS_00071380-exon-scaffold_60-1491911889:990966..991067Clytia hemisphaericaexon
TCONS_00071380-exon-scaffold_60-1491911889:989698..990250TCONS_00071380-exon-scaffold_60-1491911889:989698..990250Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071380-proteinTCONS_00071380-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:989698..994754 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
91.2237	88.3368	19.9521	15.9203	52.5874	39.4133	85.4099	92.1774	62.9547	68.9926	57.0891	38.8222	30.5244	29.1546	35.6873	34.8274	44.4638	37.4542	21.8305	35.8871	33.5569	32.5146	59.0005	56.6433	36.8679	47.9271	65.1843	54.0255	76.4869	63.9866
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR010908Longin_dom
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00071380 vs. Swiss-Prot (Human)
Match: YKT6 (Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.430e-66
Identity = 109/196 (55.61%), Postives = 146/196 (74.49%), Query Frame = 2 
Query:  158 VKLFAIELFYKS-GKVKELKSAHDLQSFGYFQRSSVREFMDFTGKIIVERTSAGQRASVSEQEYLCHVFVGGDGLSGVAITDKEYNQRVAFNMLNKILEEFKKQVPSAQYMNQDPSTYNFTLCQSYLEKYQNPSEADPMMKVQSELDDTKIIMYETIEKVLQRGEKIDDLVAKSEGLSMGSKTFYKTAKKTNACCS 742
            +KL+++ + YK   KV  LK+A+D+ SF +FQRSSV+EFM FT ++IVER+S G RASV EQ+YLCHV+V  D L+GV I D EY  RVAF +L K+L+EF KQV    +    P+T ++     +L +YQNP EADPM KVQ+ELD+TKII++ T+E +L+RGEK+DDLV+KSE L   SK FYKTA+K N+CC+
Sbjct:    1 MKLYSLSVLYKGEAKVVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYPALDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCA 196
The following BLAST results are available for this feature:
BLAST of TCONS_00071380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YKT62.430e-6655.61Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6... [more]
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