TCONS_00071380-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071380-protein
Unique NameTCONS_00071380-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071380-protein ID=TCONS_00071380-protein|Name=TCONS_00071380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
RCTGICKYKYSFGTSFFYLTSLLNDVLSIVFIPFYLLPFNILYNLENYKT
KMVKLFAIELFYKSGKVKELKSAHDLQSFGYFQRSSVREFMDFTGKIIVE
RTSAGQRASVSEQEYLCHVFVGGDGLSGVAITDKEYNQRVAFNMLNKILE
EFKKQVPSAQYMNQDPSTYNFTLCQSYLEKYQNPSEADPMMKVQSELDDT
KIIMYETIEKVLQRGEKIDDLVAKSEGLSMGSKTFYKTAKKTNACCSW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044357XLOC_044357Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071380TCONS_00071380Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR010908Longin_dom
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001388SynaptobrevinPRINTSPR00219SYNAPTOBREVNcoord: 214..233
score: 31.76
coord: 194..213
score: 35.41
IPR001388SynaptobrevinPFAMPF00957Synaptobrevincoord: 187..244
e-value: 5.9E-15
score: 54.7
IPR001388SynaptobrevinPROSITEPS50892V_SNAREcoord: 189..248
score: 15.665
IPR010908Longin domainSMARTSM01270Longin_2coord: 94..177
e-value: 1.5E-20
score: 84.2
IPR010908Longin domainPFAMPF13774Longincoord: 96..171
e-value: 1.6E-12
score: 47.2
IPR010908Longin domainPROSITEPS50859LONGINcoord: 60..177
score: 20.164
NoneNo IPR availableGENE3D3.30.450.50coord: 49..186
e-value: 6.9E-41
score: 138.8
NoneNo IPR availableGENE3D1.20.5.110coord: 187..243
e-value: 8.3E-21
score: 73.3
NoneNo IPR availableCDDcd15867R-SNARE_YKT6coord: 187..247
e-value: 4.32962E-33
score: 115.158
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 183..248
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 58..188

Blast
[Close]
BLAST of TCONS_00071380-protein vs. Swiss-Prot (Human)
Match: YKT6 (Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.173e-70
Identity = 109/196 (55.61%), Postives = 146/196 (74.49%), Query Frame = 0 
Query:   53 VKLFAIELFYKS-GKVKELKSAHDLQSFGYFQRSSVREFMDFTGKIIVERTSAGQRASVSEQEYLCHVFVGGDGLSGVAITDKEYNQRVAFNMLNKILEEFKKQVPSAQYMNQDPSTYNFTLCQSYLEKYQNPSEADPMMKVQSELDDTKIIMYETIEKVLQRGEKIDDLVAKSEGLSMGSKTFYKTAKKTNACCS 247
            +KL+++ + YK   KV  LK+A+D+ SF +FQRSSV+EFM FT ++IVER+S G RASV EQ+YLCHV+V  D L+GV I D EY  RVAF +L K+L+EF KQV    +    P+T ++     +L +YQNP EADPM KVQ+ELD+TKII++ T+E +L+RGEK+DDLV+KSE L   SK FYKTA+K N+CC+
Sbjct:    1 MKLYSLSVLYKGEAKVVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYPALDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCA 196
The following BLAST results are available for this feature:
BLAST of TCONS_00071380-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YKT65.173e-7055.61Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6... [more]
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