TCONS_00071371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071371
Unique NameTCONS_00071371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071371 ID=TCONS_00071371|Name=TCONS_00071371|organism=Clytia hemisphaerica|type=transcript|length=772bp
TTCTAATTCTTATATAAATTAATTTGTAATCCAGGTCTTGGTTTTAATCT
TTTAAAACAAATCGAGaagatttcactttcgatttctaaATCACATGTCA
AAACAACCAGAGGCGGAGCGAGAGACAAGATTATAGAGTTgataaaattg
caaaaaatatgaATGAAGTAGCAATATGTCCAAAAGAAGAGGCTTCAGTT
GTCCAGTGTGTGATTCCCTTTATGAAGAAAATGAACTAGAAGAACATGTT
CAAAGTCACTTCAATGATAACCACAGATGGAATGAAGTTGAATATGAAGA
AGTACAATGTCAGTTTGATGGGTGTGGTTTGTTGGttgATGTGAAATGTC
TTGAAGATCACTTACTTGCACATGAGTTTGGAGAGAAAGCTGACTCAAGC
CCCATTAATGATGATTCTTTGCTGGCAGCTGCATTGCAGGAAGAAGAAAC
TAATGACTTGACAAGAAAAAATGATAGATGCGCAGAAAATGACATTCAGC
TTGCAAAAGACTTACAAAAACAAGCAGAGAAAGAGCTcgaggaaaaagaa
ttcaaaaaattacAGGAAAAATATGGAATGACTAGTAATGGTGGTTACAC
TGAGCAATTCAATGAAAAGATGGGTAAACAAGTTGGAAGGAATGTTTCAA
TTGGAGATTACTTTCAGAAGAAAGCAAACATGATGTGTTCAATGATGACT
GGAGAAGATACTAATGAAACAAGAACTACTGGAACAATTACAGTATTAAC
CAATTACTATCAATCAGGAAGN
Run BLAST on NCBI

transcript from alignment at scaffold_60:769317..774742-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071371 ID=TCONS_00071371|Name=TCONS_00071371|organism=Clytia hemisphaerica|type=transcript|length=5426bp|location=Sequence derived from alignment at scaffold_60:769317..774742- (Clytia hemisphaerica)
TTCTAATTCTTATATAAATTAATTTGTAATCCAGGTCTTGGTTTTAATCT
TTTAAAACAAATCGAGAAGATTTCACTTTCGATTTCTAAATCACATGTCA
AAACAACCAGAGGCGGAGCGAGAGACAAGGTAGGTAGAAATTTTAAGACA
AAACCTTCTTTTCTTTGTCTTTTTTCTTTTTTGAACTTTAGCCATTGATT
TTATGATTAGGATAACAAGATCAAGTTCCAAATTTTCTATAATATTTTCC
CTTCTGCCTTGTTGTCTTCGGCATCTTCATTGAGACATTGCAAGAGCTTC
TCCTCAGATAATTTCTTCAGCGCGTGTGACCTCTACTTTTCTTTCTCTTA
ACTAGGAGACTTTTCTTTCTTCGTTAATTTTTGGCCTTCCCATCATTTTG
CGCAAGTTTTGAACTTCATAGATCGACTCAGCACGTTTTTTTCTCCCTTC
TAGCAAAATTTCGTAGAGTTCTGCTTATGTTTCGTGGACCTAGACTAGGA
CGGTTTAGGGTCAATCAATCTAAAGGCCGATCTACATCATGAGAATTTTG
TGAAAAGTAATAATATAGATCGGGCCATATTCTAGCTGGGAGACCCGACT
TCTCTGTCTGTGTGTGTGGTTGTTTCAAAAAAATATCAAAGTATAGACAC
AGTATAGTAGCCGGGAATTATACAAGATACAAGAATCAATCGCAGAATTT
GATTGGCTAATATTTTATTGTTATGATTTGATAAACAAAAGTATGACGTC
AAACAGTTCTATTGTTTCAAGAAGTGGCGCAAGCTTTTGAATTGTTTTGA
AAAGATAACGGTTTTTTTCTTTTGTGATTTGAAGTGATTTGAATAGGCCC
GTTTCATGTGACGTCAATTTTCTCAGGATCTAGAAGGAATTTTGAATGTA
AATTTTAGTATGTTACCGTAGAATCGTCTAATATCGACATGCGTCTTCTA
ATTTCAACACTGGATCTGTAAAATAATCAAAACAAACCTAGAATGAAATT
CTTAGTATCATTCTTATCGAACAAGTTCATCCATCAAACTAGAAGTTCAG
TAAACATTGCAATCCTTTCAATAAAAAAAAACAGCCAAATTATAAGCAGT
TTCACACAACACACGAAACGCATGCAAACTTCCTCATAACTTTCTCGTGT
CCATCATTAAAATTTTACAATTCTTTATTATGCTTCAAGTCACATGATAA
AACTAATTCGCGCGCTTAGTCGACCTGGTTTCCCTGTCCTTATTGTTTAT
TGTAAGCACGTGCTCTAGGCGCTAAGACAGAGGCCGCATTAAACTTCTAG
GCGTCGCACCTAGCACACCCGGTCCCTTTTCAAATTCATAAGGAAACCGG
GTTCTTTTAATTATTTTCGGTTCACTGTAAAAAGGTCTACTAAAAAAATC
CTTGCGTTCAAAATGTTTTTGATTTCGGCATCTTCGTTGAAAGCATGCTA
ATTAGTTTTTTAATGATTACTACATCGTTAAAGTTTTCTTTTTGAATATA
CAAGTAATAACACTTCACATTTCTCATATTATATTAACAATCTGTGATGT
GATAGGGAGAGTACAATTTAGTGATTGATTGATAACTTTGGTTTGTATTT
GTTTATGTTTGATTTTTTATTTTGAAGACCAGCCTACAGCTATGTCGCAA
TTAGAAGACGCATGTCGATATTAGACAATCCTACGGTATCTAATAACAAT
ATAGGATTCTTTTACTAAAATTTCATGAAATTCTGATGAAAAGATTTTGA
ATAATAAAATCAAAACTGCCTTTTTCCAGCGAGCACTTCGTGTTTTCTGC
CTCTGAAAAACCGTAACTATTTTGGCACATGCGCATGCAAACGCGAAAAA
TCAAAACATTGAAACGGGTCTATTGAGTCAATAATTCCATACTCTGCATT
TCAGTGAAGTTGTTGGGATTTTGACAGGATAGAAATATTTTTGTAACAGA
GTATGGTCTCAAGACTAGCCATATTTAAGAAACGCGTTTAAGCGCGGTGC
ATCGTTAAAAATTACGTCAACACATGCCAGTGCAAATGAGGCTATTTATG
GTTTTTCAAAGTTTGAAAAAGAATGAAAAGGTATTTTATTTTGGTTTTTG
GGTCATCGGTATCACGGAAACGTGATCTTTCACGTGATCTTATTTTCATA
TTGCGCAAATAGTCTGCTCTGAATTGGTAACATTCTCTTAAATAAGAGAC
TGAAAATCTCCTAAATAAGGTAATCTAACTTGGGTATTCTCTTATTTAGG
GTATAATCCTCGCTTGTCTTTTGAATAACTAAATTACTCCAGCAAAAACT
TTTTAATGATAACGTTATATAATTGATTTAGCTTTTACAACACATCTGTT
ACCTAGGTACAAGATAATTTATCCTGTTTGTACCGTCAACTGCTCTAACT
TGGGACTATCTGACAAAACATGGGACGGCAATTCGGCCCACACCGCACCT
CTAAAGTCATTTGATTTGAGTTAACGAACGGCGTATTAAAGATTACACAA
TTTCTCTTTCGGACTAAGTAGGCTTTTAAATTGATTGAAATTTTAAAGGA
ATCCTTAGTTTTATCTTGATCACATGCGAATGTCTGGAACGAAGAAGACC
AAATAAGTGGCAAAACAATGGAGCGTTCGACGTCACTCGCGTGGCAAGTT
ACACACTCGTTATTTGTTAATGCCTTTGGGCGATAGGCGGTTAGATGGCG
GGCGTTCTCTAAATCTCCAATCTGTGTCAAATTTGTTGTCAAAGAGATTA
AACATTAAGTGAAAATACAGGCCAGATTGTCAACAGTCCCATGTTTCGAC
CAATCGTCCCAAGTTAGAGTTGGCGTTACTGTACCCAGATATTTCAGTTA
AAAACTTTTGGCTAGTTCTTGTACCCGGCTGCAATAAAAAAAATCAAATT
AACCTTTCGTCCTCATTTATAGAATTGTAACCAAAGGTTTTTCTAAGTAG
TTTTGTTTGATTCTCATGCTACAGACAAAAAAGCAAAAAGGAGCAAATGG
AAAAAAAAGAATAGGCTAAGAGACAGGCATGTAAAAGATTTGTTCTCAAA
ATAAGTCAATGGTTTTATTCATCTTTTCATTTGGATATCATAAGCAGAAA
AAAATATTGCCAGTTGGTCAAATGGCCTTTTCAGTTAGACACTTTGTGTC
AGGGCTTATTTGCCCTGAATATTTTTTCAAGGAATTTAATGGGTTGATTC
TTTGTGTTTTAAATTTGACATGGTCAAATTTTAGTTTATCTTTCCTCTCT
CTAATGAAAGAGGTCTGATTCCTTAAAAAGTTGCAGAACTCAATAGATTT
CACTTCAAAGAGGGACTTCAAAGTTATTTCTGACACTTTCACCAGCCCAC
TACAAGGGTTTGGGATCTCTTGAGTTTAATATTTCAAAATATCTGAATTA
TCACGTGCCTTTGATTCAGATTATAGAGTTGATAAAATTGCAAAAAATAT
GAATGAAGTAGCAATATGTCCAAAAGAAGAGGCTTCAGTTGTCCAGTGTG
TGATTCCCTTTATGAAGAAAATGAACTAGAAGAACATGTTCAAAGTCACT
TCAATGATAACCACAGATGGAATGAAGTTGGTAATTGTCCTATACATTTT
GTTTTGTTATTTACAAAATTTACAAGTTTTACATTTCTAGGACGAAAGAT
TTGAATGATGAATAATCCTCTTTAATGTAACTTTTATCTTTGCCCATTAA
TACCCATTAATTACCCATCATTACCCATTAATTTTGGTTACTATTTATAA
AATTTTGATTTGCACAACCTTTATTAATTCTTGCATACACAGAGATTAAA
TTAGACAAAAATAAGTTAAAAATTGCGCTTTAGGTCCACCTCCATGTGTA
TTACAGCCAAATTGTACATTTTAGAGGTTTTCTTTTAAAACAGTAAAATA
ATTCACTTGTGTTTTTAATCATAGAATATGAAGAAGTACAATGTCAGTTT
GATGGGTGTGGTTTGTTGGGTACAGTATTCATGTTTTTATTAAAGATCTT
ACTGTATTTGAGATTGATTAGATGATTTTGTTTAGGAATATAAATTGAAA
TGCTAACCTTTCTTTGCTGATCTTATAGCCAATTTTACTTTGTGATAAAT
TATTGATGAACTGCTGGATAAAGTTACTATATAAGATATAACCTGCAATG
TTTTTCAATGGTTTCAATTTTACTTGTTTTATTTTTAGTTGATGTGAAAT
GTCTTGAAGATCACTTACTTGCACATGAGTTTGGAGAGAAAGCTGACTCA
AGCCCCATTAATGATGGTAAATTTTCATTACTATAAGACTTGAAGACATT
TTAAAGTTAAATACATACTGTTTGAAAGATATTCCAAGGTAGATTATTTG
AAAGATTGAAAATTTTTATAAGAATGAAAGTTGAAGGAGGTTGATGAAAA
AAAATTAGGATTTACTATCTCAATAAGCTCTTTTCAACCATTTAATTCTT
TTAGATTCTTTGCTGGCAGCTGCATTGCAGGAAGAAGAAACTAATGACTT
GACAAGAAAAAATGATAGATGCGCAGAAAATGACATTCAGCTTGCAAAAG
ACTTACAAAAACAAGCAGAGAAAGAGCTCGAGGAAAAAGAATTCAAAAAA
TTACAGGTTTAGAAAAGTTATCCAGTGTTGTAACCTGTTGCTACACAACC
TGTTGTAACCTGATAACAACTGGTCATAATTCTCTTACTGACAAAAAAAA
TTAACCATCTGAGGAAAATAGTCTTCCCGTGTAAAATTCTACAGTAAGAA
TCTTGTTGTATGTTGGAAAATCAAAAACTAAATTTTCCTAATTGCCCTAT
TTCAACTTTGTTTCACTACTACCCAGCCCACTCTTTTGGCAATGCATGGA
CCTTAAGAAAATGAGGTTGCATCTAAAAAAGTATGAACTTTCAATACATC
CTTATCCTTGGAATTCTTATCCAGTTTGTCTTCTTTTTTCATTTTGCAGG
AAAAATATGGAATGACTAGTAATGGTGGTTACACTGAGCAATTCAATGAA
AAGATGGGTAAACAAGTTGGAAGGAATGTTTCAATTGGAGATTACTTTCA
GAAGAAAGCAAACATGATGTGTTCAATGATGACTGGAGAAGATACTAATG
AAACAAGAACTACTGGTATTTTAATGATACCCCACAAAATTTTGTGGTTT
TGTCAAAAAACAGCAAAGTTGAAATCCTTGAAAATTTGTTTTGCAAAAAT
TTCTTCTCGCAAAAATTCTTCCCTTGGGTACTTTTTATTTACTACTGACT
TTTTTCATTCAATATTTGGTTTGTTTAAAATCGAACAAAATTCTATCAAT
TTGAATCACTGGAAGACAACCTTTTGGTTTGACCATAGCATAACAAGTGC
AGTTATTTTTTTGTCTTATGTATCCTCTCTTACAGGAACAATTACAGTAT
TAACCAATTACTATCAATCAGGAAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044350XLOC_044350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071371-exon-scaffold_60-1575043694:774614..774742TCONS_00071371-exon-scaffold_60-1575043694:774614..774742Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1575043694:771163..771323TCONS_00071371-exon-scaffold_60-1575043694:771163..771323Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1575043694:770774..770818TCONS_00071371-exon-scaffold_60-1575043694:770774..770818Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1575043694:770477..770554TCONS_00071371-exon-scaffold_60-1575043694:770477..770554Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1575043694:770137..770288TCONS_00071371-exon-scaffold_60-1575043694:770137..770288Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1575043694:769628..769793TCONS_00071371-exon-scaffold_60-1575043694:769628..769793Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1575043694:769317..769357TCONS_00071371-exon-scaffold_60-1575043694:769317..769357Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1510915933:774614..774742TCONS_00071371-exon-scaffold_60-1510915933:774614..774742Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1510915933:771163..771323TCONS_00071371-exon-scaffold_60-1510915933:771163..771323Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1510915933:770774..770818TCONS_00071371-exon-scaffold_60-1510915933:770774..770818Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1510915933:770477..770554TCONS_00071371-exon-scaffold_60-1510915933:770477..770554Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1510915933:770137..770288TCONS_00071371-exon-scaffold_60-1510915933:770137..770288Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1510915933:769628..769793TCONS_00071371-exon-scaffold_60-1510915933:769628..769793Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1510915933:769317..769357TCONS_00071371-exon-scaffold_60-1510915933:769317..769357Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1491911889:774614..774742TCONS_00071371-exon-scaffold_60-1491911889:774614..774742Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1491911889:771163..771323TCONS_00071371-exon-scaffold_60-1491911889:771163..771323Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1491911889:770774..770818TCONS_00071371-exon-scaffold_60-1491911889:770774..770818Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1491911889:770477..770554TCONS_00071371-exon-scaffold_60-1491911889:770477..770554Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1491911889:770137..770288TCONS_00071371-exon-scaffold_60-1491911889:770137..770288Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1491911889:769628..769793TCONS_00071371-exon-scaffold_60-1491911889:769628..769793Clytia hemisphaericaexon
TCONS_00071371-exon-scaffold_60-1491911889:769317..769357TCONS_00071371-exon-scaffold_60-1491911889:769317..769357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:769317..774742 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0679	13.2649	23.2148	17.622	13.1216	9.89258	9.97971	8.71375	5.14536	7.51878	2.80041	3.48348	0.670822	2.42465	2.56929	2.52532	4.11391	4.28117	1.01697	4.26852	2.45481	2.42084	7.4617	9.64534	4.83864	7.80746	4.27842	0.27887	2.60162	4.6859
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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