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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071347 ID=TCONS_00071347|Name=TCONS_00071347|organism=Clytia hemisphaerica|type=transcript|length=1771bpRun BLAST on NCBI protein sequence of TCONS_00071347-protein >TCONS_00071347-protein ID=TCONS_00071347-protein|Name=TCONS_00071347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp MAADNLSCVLYGIDDMRIESRPTPEPGPNQVLLSMHSVGICGSDVHYWKHRun BLAST on NCBI transcript from alignment at scaffold_60:418778..431569- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071347 ID=TCONS_00071347|Name=TCONS_00071347|organism=Clytia hemisphaerica|type=transcript|length=12792bp|location=Sequence derived from alignment at scaffold_60:418778..431569- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:418778..431569- >TCONS_00071347 ID=TCONS_00071347|Name=TCONS_00071347|organism=Clytia hemisphaerica|type=CDS|length=10530bp|location=Sequence derived from alignment at scaffold_60:418778..431569- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071347 vs. Swiss-Prot (Human)
Match: DHSO (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4) HSP 1 Score: 411.379 bits (1056), Expect = 1.165e-138 Identity = 196/345 (56.81%), Postives = 255/345 (73.91%), Query Frame = 3
Query: 198 DNLSCVLYGIDDMRIESRPTPEPGPNQVLLSMHSVGICGSDVHYWKHGRIGDFVVNAPMVLGHEASGIVVETGEGVEHLKKGDRVAIEPGVPCRMCDCCKTGSYNLCPKMEFCATPPIDGSLCRYYVHAADFCYKLPDHVSCEEGALLEPLSVAVNACKRAQVKMGDHILVCGAGPIGLVSLLVAKACGATQVCITDLDENRLKVAKELGADMTFKITSRDGREVAEQVKKKFG-RIDKTIECSGAESSVHTAIYATASGGIAMLVGMGKAEINFPIFEALAREIDVRGNFRYVNCYPTALDLVASGKVNVKPLITHRFKLEESHKAFTTSSSPGCNTIKVMISC 1229
+NLS V++G D+R+E+ P PEPGPN+VLL MHSVGICGSDVHYW++GRIG+F+V PMVLGHEASG V + G V+HLK GDRVAIEPG P + CK G YNL P + FCATPP DG+LCR+Y H A FCYKLPD+V+ EEGAL+EPLSV ++AC+R V +G +LVCGAGPIG+V+LLVAKA GA QV +TDL RL AKE+GAD+ +I+ +E+A +V+ + G + + TIEC+GAE+S+ IYAT SGG +LVG+G P+ A RE+D++G FRY N +P A+ ++AS VNVKPL+THRF LE++ +AF T G +K+M+ C
Sbjct: 8 NNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKK-GLG-LKIMLKC 350 The following BLAST results are available for this feature:
BLAST of TCONS_00071347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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