TCONS_00071155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071155
Unique NameTCONS_00071155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071155 ID=TCONS_00071155|Name=TCONS_00071155|organism=Clytia hemisphaerica|type=transcript|length=2040bp
GAAAGAAGATGGGACAAAATGGTAGGGTTAAAGTACAGATGAATTGTATC
AGCATTGGACAATGAAATATGAAAATAGATGactaaaattgataaaaatt
gctATAACTCAATCTAAGATGTGGTGGTTTGCCTTGGTGTTGTTGATTCA
TGGGTCTCACGGAGATGCTCAGCATGCTGCCAAGAAATCACTACACCGAA
GATTAAGTGATTATCCTGTACTCAAACGTTGGGAGATACCAATCAAAGCT
AACGTCGTTGGTCGAAGAAACAAAGACTTATGGGGAGACTCGAAAAAGAA
ACGTTCATTTTGGGAGGCAAAGCCCCAGTTTACACTACATGAGCTTGAAA
TGGAAAACGATCCAGAGAAGATATATATGGATTTACACTATTCAAGAAAT
ATGCTTGAAGACGATTCTGACGCAGATAAAAGTATTGCACAATATAAGAA
AGATACATTGGAGTCGCCACCGTTGTTAAAGACTTCTGCGAAGAAGGCAG
AGGTTAAAAAGAAAGATGGTAAAAAGTTACTCCAACAAAAAGTAACAAAA
CATAAGGAAGCAGACAAGAAAAGATTAATTGCATTAAAACCTTTCTTGTC
AGCCAAACACGTGACAACATCaacgaaaaagaagaagaaaaagagaagCA
GAAGATCATTGGAGGATGAGGAGTTTGAAGAAATTAATACTGATGATGGA
GACTTTTCAATGGCGGGTTTCCAAGATGGTTTGATAGATGAAAGAGAAGA
TGCAGAGAGAGTCAAACGTGATTCTGAATCAATCGCTAACTTCTATTTTG
ACCAATACGATGATGATGGTGTTGATGGTAACGAAGCTGAAACTTACAGT
AAAAATAATGGTAATAATGTTGATGATGATACCCCTTCTCAAGATCGACA
AAAAAGATCCATTGTTAACAAACCTAAAGATCATAAACTTGCCGTTGATA
ATTTGAAACGATCACGTACAGAAAATATTGCAAAACTGTTTCATAAATCA
GTAGCAAAGACACATTCTGCCATCGATGCTTCAGCCAAACGATCAAGTTT
GTCTTCTAATATTGTTACTTCCAAGGCTGTTAGTAAAACTGACGGTGATT
CTGCTGAGCAAAGAAAAGCTAAAGCTTTGATTCAAAAGGCATTTTTCAGT
TCAAAACATGGGCACTTAGTACCAAAAACCTCCGTTCGTCATATAATCCC
AGAAAGCTCGACAACAATAAAGAAGATAGTCCCTAATGTTGATGTTAAAG
TTATATCAAAGAATCTTCTAGAACAAGATATTGGAGCTGTACCAGGTctt
aaaaaagatgaaaattcagTAAGCAGGCAACATATAGCACATCCAGAAAA
ATCAACGGATAGTATAAACACAGCAAATGTTGCACGTGCAGTTGCAGTGG
CAATGGAACAATTAAAAAGAGATAAAATGTGGGGCAAAGTATTTGTCCAT
GTTAGACCAAGTGGTGAACTTAAGGTTATGGTACAAGAAACTAAAAAGAT
GGAAGAAGAGACTTGAAACTATATTGATATCTTGAATAAATAATCTTTTG
TACATTTGTATTAAACGTTTTTACTTTTCTAGAATTTTACAGTGGGGATT
AAGATTTCTATCGAAACCCTAACGAGCGAGGATAAAACTCTTTTGTTCCG
AGCTCAAAATGTCCAGTGGAGATGGATTTGGAGTGCAAGttcttttcatc
aatttttgaatgaggatgcaatcaaaatgaatttccCAGTGGACCTCAAA
TTGTAGAAAGCTCTTTCCAACTGGGGATGAAATTCTAACCAAATCTCCCG
ATGCGCTTGGGGTTCCCACCGGGTTCGTGACAAAGGGTTTTTTCTAGATA
TGACAGTAATAACCAGTAGTGAAGGCattaaattaattttgttatcttta
aattttttagacCTAGTTCTTATAGtaatatattgaaaataaaacttacg
aatactttttttaaatgcacCTTTAACAAGTTTATAGAAATCAAGTAAGG
ATTAATCATTGTTATTAATATTCCAAGGGTTCCAAAATCc
Run BLAST on NCBI

transcript from alignment at scaffold_6:69787..73265-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071155 ID=TCONS_00071155|Name=TCONS_00071155|organism=Clytia hemisphaerica|type=transcript|length=3479bp|location=Sequence derived from alignment at scaffold_6:69787..73265- (Clytia hemisphaerica)
GAAAGAAGATGGGACAAAATGGTAGGGTTAAAGTACAGATGAATTGTATC
AGCATTGGACAATGAAATATGAAAATAGATGACTAAAATTGATAAAAATT
GCTATAAGTATAAAAATATGTTGAATTATATTGAAGTTCTTTGAAATTTT
GTTTCGTTTAGCATTAAAATTTCGATTTTTTTATATTATAGCTTATAAGC
TTCTCAAAGCTAAAAAAACCTCAATCCAAGCTAGGCTGAAAGGATTCTTC
TATATTTCAGCTCAATCTAAGATGTGGTGGTTTGCCTTGGTGTTGTTGAT
TCATGGGTCTCACGGAGATGCTCAGCATGGTAAGATCTTCTTGTTTAAAA
AAATTAGCTGTTGGATATTTGCATATTAGCATATCATAAAATTCCAAATT
AAAGTATTCAGCCTTGTCACATTCTGTACAAGTACTACAATCCCGGTCAT
AATATTTAAGAAAAAAAGGGAAATTCCCACGAAATCTCATAGCCACAAAC
GATTTGGAAGCGCTTTAACTTACTTAGGATCTGAGGATCCAAAAGTTCAA
GAATGGTCCAAAAGGGCTGCGAATATAGCCTGGAAGTCTATAAACCCCAC
TCAATTTGCAATATTCGATTAAATTTAACAATGAAATAGCCCAAAAGCGA
CTTTCTCGCCCGAACTTTAATATGCTAAAAACGAGGAATTAGCCAAATTT
ATCAATATATTTTGATATTGTAGGTTTTTATTAATAATTGGGGAACATCC
TACACTGTCGAATTAAACATCTACTCATAATACACCACATTTTACACCTC
CTTCTCGGTGGAACCAATTCAGCCAGTAGGGGTAAAAATAACGGACCAAA
ACTCGATGGGGATTAATATTCTCATTTTCTTATGGTTGGGGATTTGAATT
CTATTGTTTTTGAGCCAGAAAATCCAGTGGGGATGGAAAAAGTAGCACAA
TATTTTGCAGTGACGATTTAATTATCTGATTATTTTCAGCGAAGGCAAGA
GTTAAAATATAATTTTCTACTGGGTACGATATTTTGGCCAATTTTTCCAA
TGAGTCTCATCGGGTATGTGAGAAGGGGGTATCATTAAAATGTGTTCACA
CCACGTTAAATTCGTAGTCTGATTGTGTATGTAACGGTGGACGTTATGGC
CCTATGACTAACCATATATCTATAACCAGATATCCAAGCCTTGTCTTTCA
TCTAACTACAGCTTCAAGGAGTGCCTAAAGAATTTTCATATTCAAGGCCA
TTCTTCACAGTGGCTTTTTGATGCATTAAACTGTCTCGTTTCAATGTTTT
GTATTCTTATTTTTAAATTTCTTTCGTGATCCTGAAAATAGAAAAGTAAG
TTAAAATATACCGTAATCAAAATCTGGGAAAGTTTGATTAGCTCTTGATC
TATTGCTAGGGGCTCATCTAAAGAACATCCCCACCCCTTTACGAATATAA
TTTATTTCACTTTTTTAAAACTCGATCATCAATCGGCTGAAATCTAAAAA
CTCGTAGCATCAAAAGCTTTACGTTTTTATTGTAATATTTACATAATCTA
TGTTTAGCTGCCAAGAAATCACTACACCGAAGATTAAGTGATTATCCTGT
ACTCAAACGTTGGGAGATACCAATCAAAGCTAACGTCGTTGGTCGAAGAA
ACAAAGACTTATGGGGAGACTCGAAAAAGAAACGTTCATTTTGGGAGGCA
AAGCCCCAGTTTACACTACATGAGCTTGAAATGGAAAACGATCCAGAGAA
GATATATATGGATTTACACTATTCAAGAAATATGCTTGAAGACGATTCTG
ACGCAGATAAAAGTATTGCACAATATAAGAAAGATACATTGGAGTCGCCA
CCGTTGTTAAAGACTTCTGCGAAGAAGGCAGAGGTTAAAAAGAAAGATGG
TAAAAAGTTACTCCAACAAAAAGTAACAAAACATAAGGAAGCAGACAAGA
AAAGATTAATTGCATTAAAACCTTTCTTGTCAGCCAAACACGTGACAACA
TCAACGAAAAAGAAGAAGAAAAAGAGAAGCAGAAGATCATTGGAGGATGA
GGAGTTTGAAGAAATTAATACTGATGATGGAGACTTTTCAATGGCGGGTT
TCCAAGATGGTTTGATAGATGAAAGAGAAGATGCAGAGAGAGTCAAACGT
GATTCTGAATCAATCGCTAACTTCTATTTTGACCAATACGATGATGATGG
TGTTGATGGTAACGAAGCTGAAACTTACAGTAAAAATAATGGTAATAATG
TTGATGATGATACCCCTTCTCAAGATCGACAAAAAAGATCCATTGTTAAC
AAACCTAAAGATCATAAACTTGCCGTTGATAATTTGAAACGATCACGTAC
AGAAAATATTGCAAAACTGTTTCATAAATCAGTAGCAAAGACACATTCTG
CCATCGATGCTTCAGCCAAACGATCAAGTTTGTCTTCTAATATTGTTACT
TCCAAGGCTGTTAGTAAAACTGACGGTGATTCTGCTGAGCAAAGAAAAGC
TAAAGCTTTGATTCAAAAGGCATTTTTCAGTTCAAAACATGGGCACTTGG
TACCAAAAACCTCCGTTCGTCATATAATTCCACAAAGCTCANAAACATGG
GCACTTAGTACCAAAAACCTCCGTTCGTCATATAATCCCAGAAAGCTCGA
CAACAATAAAGAAGATAGTCCCTAATGTTGATGTTAAAGTTATATCAAAG
AATCTTCTAGAACAAGATATTGGAGCTGTACCAGGTCTTAAAAAAGATGA
AAATTCAGTAAGCAGGCAACATATAGCACATCCAGAAAAATCAACGGATA
GTATAAACACAGCAAATGTTGCACGTGCAGTTGCAGTGGCAATGGAACAA
TTAAAAAGAGATAAAATGTGGGGCAAAGTATTTGTCCATGTTAGACCAAG
TGGTGAACTTAAGGTTATGGTACAAGAAACTAAAAAGATGGAAGAAGAGA
CTTGAAACTATATTGATATCTTGAATAAATAATCTTTTGTACATTTGTAT
TAAACGTTTTTACTTTTCTAGAATTTTACAGTGGGGATTAAGATTTCTAT
CGAAACCCTAACGAGCGAGGATAAAACTCTTTTGTTCCGAGCTCAAAATG
TCCAGTGGAGATGGATTTGGAGTGCAAGTTCTTTTCATCAATTTTTGAAT
GAGGATGCAATCAAAATGAATTTCCCAGTGGACCTCAAATTGTAGAAAGC
TCTTTCCAACTGGGGATGAAATTCTAACCAAATCTCCCGATGCGCTTGGG
GTTCCCACCGGGTTCGTGACAAAGGGTTTTTTCTAGATATGACAGTAATA
ACCAGTAGTGAAGGCATTAAATTAATTTTGTTATCTTTAAATTTTTTAGA
CCTAGTTCTTATAGTAATATATTGAAAATAAAACTTACGAATACTTTTTT
TAAATGCACCTTTAACAAGTTTATAGAAATCAAGTAAGGATTAATCATTG
TTATTAATATTCCAAGGGTTCCAAAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044229XLOC_044229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071155-exon-scaffold_6-1575043694:73159..73265TCONS_00071155-exon-scaffold_6-1575043694:73159..73265Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1575043694:72937..73005TCONS_00071155-exon-scaffold_6-1575043694:72937..73005Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1575043694:70728..71708TCONS_00071155-exon-scaffold_6-1575043694:70728..71708Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1575043694:69787..70669TCONS_00071155-exon-scaffold_6-1575043694:69787..70669Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1510915933:73159..73265TCONS_00071155-exon-scaffold_6-1510915933:73159..73265Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1510915933:72937..73005TCONS_00071155-exon-scaffold_6-1510915933:72937..73005Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1510915933:70728..71708TCONS_00071155-exon-scaffold_6-1510915933:70728..71708Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1510915933:69787..70669TCONS_00071155-exon-scaffold_6-1510915933:69787..70669Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1491911889:73159..73265TCONS_00071155-exon-scaffold_6-1491911889:73159..73265Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1491911889:72937..73005TCONS_00071155-exon-scaffold_6-1491911889:72937..73005Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1491911889:70728..71708TCONS_00071155-exon-scaffold_6-1491911889:70728..71708Clytia hemisphaericaexon
TCONS_00071155-exon-scaffold_6-1491911889:69787..70669TCONS_00071155-exon-scaffold_6-1491911889:69787..70669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:69787..73265 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.645591	1.20005	0	0	0	0	10.2984	11.3536	5.12042	2.48689	1.98149	3.9733	7.47347	5.67663	4.05362	15.1014	9.45664	7.55609	0.174209	0	4.85198	4.31134	4.62628	6.05176	10.4087	13.2891	1.4454	0.683124	0.155026	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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