|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071043 ID=TCONS_00071043|Name=TCONS_00071043|organism=Clytia hemisphaerica|type=transcript|length=1000bp
TTTTGAcgggtttttgattttttatgtttttatcgTTTGAAGGAATGCAT
GGATGATTCTTGGAGTGCTTTTTACAAGATCACAAGAGTCGAGAAATATT
GAAAAGACTGGTTGACTTTTGACTTTGCGGACGTTGGCGAATTTGACATC
AAATTGGTGCGAACAACTGACAACACTTTTACTTCAGAAGATTCGACGTC
GCAAATGAGACTTGGTGATCAAATGTACTTCAAACTCCACTTTGATACCG
TCAGAGATGACCTGAAGATCGCACCCAAGACATGCTACGCTGCAAGTGCA
AAGAATTCTTCGGAGAAATACATCTTGGTTGAGGACGGTTGTCCAAACAA
AGCAGATGGCACGGTTGAAGTGACCGACACCAACAACCAAAAGATCTTCG
AATGGCAAAACGAGGCGTTCCGATTTTTCGGCGATTCCGATGCCGTCTAC
ATCACTTGTGACGTCACTGTTTGCAAAAGTTCCGACATGGCGGCTGAATG
CAACCGATGTGACGTCAATAATACAAGACGACGTCGCGGTTTAACTTCGT
CACATAAAGCGACATACTTGACGGTCTCTAACGGCATCAAATACACGTTG
TTGTTGTAACAGACGGATACAACATTCTTGGACGCTGAAACAGAGATTTG
GTAAAATTCAACAGTGAATGGTATTAGGATTTTAGAAATTTCATGTATCA
CGAATAATAAGTTTAAGCTTGTAGCTAACGATAAAAATGATCAAATCGAA
GTACAgtggtaattttttttgtagGATTGAACTCAAGTTCTTATTTTCAT
GTTTGTTGTTTTCAATTTACTTTTGATCGTGGTTATTCTGTTCGAAACCT
TTGCATGATGATAAAgtatgaaaagaaaatattttatagcTTCATTTTCT
ATGATCTGGAATTCTTGATAAACAAtataaattatgtaaaaaaaCATATC
CTTGCACTATTTACACAAAAGAAGTGCTGCCTAAAAACCATGAACATGCT Run BLAST on NCBI transcript from alignment at scaffold_58:1235251..1243332- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071043 ID=TCONS_00071043|Name=TCONS_00071043|organism=Clytia hemisphaerica|type=transcript|length=8082bp|location=Sequence derived from alignment at scaffold_58:1235251..1243332- (Clytia hemisphaerica)
TTTTGACGGGTTTTTGATTTTTTATGTTTTTATCGTTTGAAGGAATGCAT
GGATGATTCTTGGAGTGCTTTTTACAAGATCACAAGAGTCGAGAAATATT
GAAAAGACTGGTTGACTTTTGACTTTGGTACGTTTGATTTTTTATTAGGG
GGTAACTCAATATGATTTTTCTTGACTTTTAATAATTTTCTTAGGTTTAA
TTTGAAGAAATATTTACTCAAAATAGACAGCTTGTTTACTCTCATGTAAA
CGCTATCAAAATTTAATTTCTTTCGAAAGAATTCTTTCGGAGGATTGAAA
ATAGTGTAAAATCCCTTGTCTCTCACTCAACTCTCACCAAACACAATCAT
GTTTTTTACAGACAAGATGTCACAAACCTACACACCTATCCAACTATTTG
AACTGGTTGGTCTGGTTTTTATCTTTATTGTTGGACTAATTGGCAATTCA
CTCGTACTCTACGTCTTCTTGTCGAAGATACGACGCCGTGGAGTCAAGGC
CAAACCTTTCGAGCTACTTCTCTCTATCCTAGCTATCGTGGACTTACTCT
CGACTTTTTTCATGCCTGGACTTTTTATATACTTCACGTCAGTTTATTGG
AAGAAATGGCACTTCGGATACATCGGGTGTAAGATCTTGAGAAGTTTACC
AGTCTTCTTGATCACTATTTCTCAAGGAATTCTCATTATCATTGCGTACC
AAAGATATCGAATCGTTAAAGACCCTCTTCATAACAAACTGACAAGGTGA
AAGCAAAAAAACTTTTGATTCCCTAAATCTTTATCCAATATTAAGGAGGC
CTCCCAGTGGACCTTCAATTCACACAATCACGCAAAATTTGTTCCCTAAT
TCTCACGCATTCACGCAATGTTTTTTCACAATTCACGCAATGTTTTTCAC
GCAAAGCTTTCCAATTCACGTTCATTCACGCAGTTTTTTTTCTACTTTTC
ACGTATTCACGCAAGTGAAAAAGCCCATTCACGCATTCACGCAAACCGCT
GGGTGGGGCATTAAGTACAATGTTTATCGTTCGATAATTTTGACTCTTGT
TTAAGAAATCATGTATCGTAGGAGTTAAGTAAGCGCTGGAAGAAAAATTG
TCGGCGGGAGGGGCTTAAAGCACCTTCTCATCAAATTTTGCTCGTTCTCC
TACGCACCTCCTATTTTAGAAAACATTCAACCGCTCTTATCTCCCCCTCT
TAAATTATCAATTTATAGACTAGCTTGTTTGTGACTAGTCAAGTGAGGCT
TTAGGTTAAGGCTGTTGATAACAATTTAAAACTTATTCAAGCATTACTCT
AATCTAAGTTTCGGATTCTTTTTCTTTAGATGTTCACTTCTACCCTCACT
GAGTATTCTTATCATTGTATCAGCTCTCTTGGTGAGTCCATGGACGGTCA
CTTTAAAAATCGTTGAAAACAAAGCTAATGGAATAGAGACTTGTAATTCT
TCATCAATGGAAGGTCTGTGGATGGGAAGGGTTTTGAATTTCATATTTGA
ATGTTTGAACCTGACACGTGGTGTAGTAGCAGCAGTAACCATAATCGTGC
TCAGCCAAATGACGTCACAAGCATTGGAAAAGAATAACGATTTTTATAAG
AACAACCCAGTCTTACGTTTACGCGTACAACACGTACGTCGCTTGTTACG
TACTATCACAATAGCGTTCAGTATCTTAGTCATCCCCGCGGATGCGTTTC
ACGTGATCTACCACACAATGACGTGGACGATGAAGCTCACACCAGAAACG
TTCGCCGTACTCCTCAATATTCACGTTCTGCTTAAACTTCTCCAATCTTC
AAACAGCGCTTTTAATTTTATCATTTACGCCGGAATGAAAGGCGACGTCA
ACAACTTCTTACGTAAACTCAGCCGGCGTGTCGTGAGTAGATCCAGATTC
GTGGTAAACGTAACGGAGAAAAAGGGAGAGGAAAGAATACCGAGAAAACT
AACCACTCTTTCGACTATATCTTCAACTGGGTGTTGAACGCTCTAAATCC
AAACTCAAACCCAGACCCTTAACTCGCTTTTTTATAATGAAGATTTATTG
GATCAAGAAAATATAACAGTGAAATACTGCATTGTACCAAAAGTTACAGT
GACTATTCCACTCAAAAATAGCTTGCATTGGTGAAGTGAAAAATTAACTA
ACGAAATTAAGAGAGAATTATTTGTGCAATGTATTTATATTAAAATTGAT
TTTAAATACTTTCACAAATAATCCTAGTTTGATATAAATAATTCTAGATT
TTTCTACTCTACGATAGATCTTATAGTCATTGTTGTCTCTGACCGATCTC
TCAAAGAGAAGCCATCTTTCCAACAACAAAACAATCTCTGGAAAATTTTG
AATTTGAATCTTTTAGAATATAACAACGGATTGATACTACATTGAGCGGC
TTGCAGAGTCTTCAGAATAGTTAACGCGAATCTTAAGTAGGAGTAAACCT
CGTGGTTCATTTTAACTTCAGCAGTTCTTAACACGAAATAAACACAATGG
TATAAATCAATGGGAACGATGCAGATACAATACACCAACACAATGGAATA
CAACAATTTTCGCGTGTTCTTCGTTCGCTCGATCAACTTTGGGTGAGCGG
CGTAAAACTCTTTATTTTTGTTGAGCGCTTTGACGGTAAGGCGACCGTAC
ACAAAGATGTAAACACACGAAAATAAATCTCTAAGCAACATTATGATGTC
AAAAACGAAGTTCAAAACGAATCCTTTTCTTGAAGAAGTTTGCGAGGTTG
ATGTACACGTGTTAAGACCTGACTTTTTGTTCTGTAAAATATCCAACGTC
ATCGTCCATGGGATGGTTAAGATGATTGACATGATTGCGGACGCAAGCAA
CCATGTGATGATGAAACGATTTGTTATTGGTTCTTCTAAGGGTTTGCTTA
CAACACGGTATCTTTGATAGGAAATAAGCATGAGTACACACTGTGACAAT
GTGATGAATATTGATGGTAAACTTCTCAAAGCTCTGCAGGCTGCGACACC
AAAATGCCATCTTTTCCAGTCGACAGCAGTCAAATAAATCAGTAGACCTG
GTAAAAAGATTGTAGACAGCAAATCAACCACAGCAAGCACTAATAACAAC
AACTCGAATCTGCGCGTCGGCTTTCGTTTCATCTTACCAAAGAATACCCA
AAATGCAATTCCATTTCCCACAATTCCGAGCAAAAATATGAAAATGAGAA
AAGCCAAGTTTACGTAGTTGGCAAGGGTGCTTAATAACATAATGATGTGT
TTGATTCTTTTAGTGAAGTAAAATGTGTTTAAATTTGCTCGTCAAATATG
GTGTAAATTAACATAAAAGTAATACATTGATGCCAAATATAAAGGCTTAT
TGTTTCGCAGCAATGTTTTCATATAACCAGAGACCCAGAAGACTTAGATG
GTCAATACAATTCAGTTCAAAAAAATCTTCCTGAATCACTTTTTCGCCTG
TTCTTCAGGTTCGTAGGTTTGTATTGAATGTTTCACAAAGTGTTGATTTT
TGTTTGCGTGTAATATTTATCTTTGTTTTGAACATTCTCTGGTATCCGAA
GAACTTTTTCAAAATGGTCACACTTACTTGAAAATGTTCAACAAGTCATG
GAGGTATTTTATTCAAGGACGTGTGACCTCATTGTTTGTAATGTTTTGAT
TGAACCTGTATATTAATACTGTAAAATGTAACTTCTGTGAAACGCGTATT
GGTTTCAAACGAAAAGTTTTCTTTTGAGAAAACTTCCGAACTTTTCCGTT
TTCAATTCAAAAACAACAGATTTAGGTTTTATAAATATTGACCTTAAAGA
GGCACCTACTTGAACACAAAAATTTAAAAAGAGAGATAATTTTGTACAAC
ACTATTAGAAATGTCCTGCCCATCAAATTATTGTCCAAAAATATTACACT
TTCGAAACTACACGTTATTAAAAGAAAATGAGTCATTAAATGAAATTATA
CCCCTGTCTCAGCTGAAATCTTTCAGACTTTGACAGTATGATAAATCGAA
GGCGTTAAATGTAAAAAGGGTCTGAAAAGTTTTTAATGAGCAGGAATTTC
AAATCTTATTGTTGTTTAAAATTCAAAAATATGTTGAGATTTTCAAAATT
ACATTCACTTTCACAGGAGTGGGGGTGAGATGAAATTTCACACGATATTT
TTTTTCTCATCGAGACGATTTTTCAACCAAATTTCTCAGAAGGGAAGAGG
GGCCTAGAGGGCCTGTGATACGAGCATGACAATTTCAAAAACATTGGCGA
TGTTGAATAACCAGACTCTCACGAAAAACAAAAACAAGAAAAAATGTCAC
GTTCTAAATACGAACACCTTTGTGGTCAAAACTGAAATAAAGTGGGTGCA
ACTTTTAAGGAAGTCCATTTAACCATATTTGATTGGGTGATGAAAACAAG
TCCATTGTTTGATCAAAACCGCATAACTATCTGGTTTTTCGATCGCTACT
CAAATACATCTGGAGAGGGTCTGCTCACTTTCTTAGCGACTGACATTTTG
AACAGTTGGAGGAAAGTCTCGCTCTGGGTGCTAAGTGGAAAATGAGGTTC
TTTTTGTTTTTCCTATCGATTGCACTTTGCAATGCTGTTAAATTCACAAA
GGAAGGTAAGTGGTTTACTGCCTTGTTGTCAAATTTGACAAATAATTTAC
GCCCCTGTCTCAGTGACCCGGGGAGAAATTTCACACATTAAGGATCGAGA
ATTTAAATCCTTTTGCTTTTAATGAGTGGGATTTTAAAACCCTAAATGAA
ATCTACTGGGGATGACTTGTAGAGTTTTCTTTCAGGTAGAGAAGGGAGTG
ACTATTGAGTCTGTGACACAAAGTCCCTACACTTTCATCCATTTTGAGCC
AATGAAGAACGAGATGGAAAGGAAGGAAGGAAGGAAGCATAATGACTATA
ATTGAAATGACACTGATTCTGTTTATTTTATCTAATAGATATCCAGTTTT
TTGGTTGTTACTCCAATAGCATGTATATAGAGTTAGCAACTTACAAGATG
GGGCTTCACGATCGAGAATTTCAAATACATTTCAAAGGATACAAAGATGA
TGAGGAATGTTCTCTTGAGTCTGGCGAAGACTTCATTAAGTACGAATACT
TTTATTTGGGCCACTATTACAGTCATTGTGGTATTCAACAGACTAGACGA
GGGAACAAAATCATTTACAGTCAAACCGTCATGCTGACATTCGGAAAAGA
TCCTGTCTCAAAGCTGGTTCATCGAACCGAACAAATTGCGTTCGAATTCG
AATGCGTTTTAGATGCTGATGCAAAAGTGAAGCTTCTTGGACCTGGACAC
GTAAATGTCTCCAGTTTGGAGGAACAATCATTCGAGAAAAGTAGGGTTTA
TATGATGACAATTCTTTTTTTACCAATTTTAAACTATTCAACAACATATA
GACATTTAAGCAATGTTATGAAAACATAGGGCTAAAATTTTGCAACAAAA
AAAAAGAAGAAGTATAAGGACAAATTGTGGACAACTCCGATTTTACAGAA
AGTACAAACAGTCGGGACCACTACATGAAAAAGGCAACTATTGCCTTAAC
GGGAAGAATTTGCCGAACGGGAAGGTGAAAATAACCCGAAAAGGAAACTG
TTTCCAGATTGAAAATTTCATCACTTTTCTGTTTTCCGTTTTGGTCAAGA
ACTTTTCATCATCCCCGAACGGGATATAGAATTTTTGTAAAAAAGCAGAT
CTTTATTTCCTGATCGAGAAAAAGTTTCCAAATAGGGAAATCTTTAATTG
GGAATAGGGAAAGTGGAATTAAGAAGTGATTACCCGGTGGATTTCTTAAC
TACCTGGTGAATATTATTTATTTTCCTTCCTTTACAAGAGGGACAAGTTT
TAAACTTTCAACAGGAATTTCCGGAGTGCTCAGAGGCCACTTTCCCGATT
GGGAAACTGGTGAACTTCCCGATTTGGAAAGTCTAGTCATTTCGGGAATT
TTTCCACCTTCCCGTTCGGGAAATATTTCCCGTTAAGGCAATAGTTGCCT
TTTCCATGTAGTGGTTTCCGACTGACAAAGAAAACATGATAAGCAAAAGA
TTTGAAATTCAAAATAAGATCGGCAACAGCCTGATAAACACAGAATAAAA
ACTAATTCTCAATTCTAAAAGAAATTGTTTATTCTGCTAAGCTTCGAATG
AACTTTTGAGTGACTGAACAAACAGTTCACAGGATGGTGGATGAAGACAA
TGATGCTAAAAGGATTTTTTGCCATAAAAGCCAGTGTGCGATATTTTATT
GCGCTGGTTAATCGAGACGGAATATCTTATGACAAACATGACTTCTAGAA
ATTCTTTCTCATTTCAAGACTATTGTTCTTCTTACTGCGACGGAAATGCT
GTTAGAAAACACAACTGGACGCGAATTTTGGTATACAGACGAAAAAGTTG
TAACACTGACTGTTCTAAGGTCTTCCAATTAGGTTTCCACTCAACTCCAA
GCACAGAAAGTCACTAAACAGAAACTTTCTTTCTCCTTTAGCGGACGTTG
GCGAATTTGACATCAAATTGGTGCGAACAACTGACAACACTTTTACTTCA
GAAGATTCGACGTCGCAAATGAGACTTGGTGATCAAATGTACTTCAAACT
CCACTTTGATACCGTCAGAGATGACCTGAAGATCGCACCCAAGACATGCT
ACGCTGCAAGTGCAAAGAATTCTTCGGAGAAATACATCTTGGTTGAGGAC
GGGTGAGCCACTAATCATTTGACTGGTTTAAGTACCAGAACTACGTGTGC
ATTTCCCGCCATTCGCCAAATTAAACTCACGCAAAATTTAAGTCATGAAA
TTTCCGAATTATAGGGCTATTTCAGTATTTTTGCCCAAAATATCCTGCAG
CATCAAAATTGATTTCCTAATGAAGTACTAAGAGAAGAGTACATTATACA
CCCCCCTCAAATAGACCCACCGAGACTACTTCCCACTGGGAAAATTAGCC
AAAATATCGTCCCCAGTGGAAAATATCCTCCGATTTTTGTCCCCACTGAA
AGTAATCAAACAAACTAATCCTCCTTGCAAAATATTACCCTATTTCTCCC
ATTCCAACTGAATTTTCTGATTTGAAAACAATGAGTTCAAATCCCCAGCC
ATAAATCAATCCTCATCGAGTTTTAGTCCGTTAATTCCACTGGCTGAAAA
GTACCTACCAGGTCTGTGAGAAAGGGATATGTTATACAAAAGGCGACAAA
AGGGATAAATCAATGCATACTTCAAAAAATATTATAGTAAAATGCACCAG
GCGTAACAAACCAATCAGTTTTCTATCGATCAAGTTTGAACAAAATAATC
ATTCGATTAATCGAACATGATTGTATGTGGTTTAACTGAATTTAGATAGA
AAGGGAAAATTCAATTGGTTACGTCATGAACACAATGCGTCATTCATTGA
TTTACTTACATTTTTCATAGTTGTCCAAACAAAGCAGATGGCACGGTTGA
AGTGACCGACACCAACAACCAAAAGATCTTCGAATGGCAAAACGAGGCGT
TCCGATTTTTCGGCGATTCCGATGCCGTCTACATCACTTGTGACGTCACT
GTTTGCAAAAGTTCCGACATGGCGGCTGAATGCAACCGATGTGACGTCAA
TAATACAAGACGACGTCGCGGTTTAACTTCGTCACATAAAGCGACATACT
TGACGGTCTCTAACGGCATCAAATACACGTTGTTGTTGTAACAGACGGAT
ACAACATTCTTGGACGCTGAAACAGAGATTTGGTAAAATTCAACAGTGAA
TGGTATTAGGATTTTAGAAATTTCATGTATCACGAATAATAAGTTTAAGC
TTGTAGCTAACGATAAAAATGATCAAATCGAAGTACAGTGGTAATTTTTT
TTGTAGGATTGAACTCAAGTTCTTATTTTCATGTTTGTTGTTTTCAATTT
ACTTTTGATCGTGGTTATTCTGTTCGAAACCTTTGCATGATGATAAAGTA
TGAAAAGAAAATATTTTATAGCTTCATTTTCTATGATCTGGAATTCTTGA
TAAACAATATAAATTATGTAAAAAAACATATCCTTGCACTATTTACACAA
AAGAAGTGCTGCCTAAAAACCATGAACATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071043-exon-scaffold_58-1575043694:1243206..1243332 | TCONS_00071043-exon-scaffold_58-1575043694:1243206..1243332 | Clytia hemisphaerica | exon |
| TCONS_00071043-exon-scaffold_58-1575043694:1236631..1236841 | TCONS_00071043-exon-scaffold_58-1575043694:1236631..1236841 | Clytia hemisphaerica | exon |
| TCONS_00071043-exon-scaffold_58-1575043694:1235251..1235912 | TCONS_00071043-exon-scaffold_58-1575043694:1235251..1235912 | Clytia hemisphaerica | exon |
| TCONS_00071043-exon-scaffold_58-1510915933:1243206..1243332 | TCONS_00071043-exon-scaffold_58-1510915933:1243206..1243332 | Clytia hemisphaerica | exon |
| TCONS_00071043-exon-scaffold_58-1510915933:1236631..1236841 | TCONS_00071043-exon-scaffold_58-1510915933:1236631..1236841 | Clytia hemisphaerica | exon |
| TCONS_00071043-exon-scaffold_58-1510915933:1235251..1235912 | TCONS_00071043-exon-scaffold_58-1510915933:1235251..1235912 | Clytia hemisphaerica | exon |
| TCONS_00071043-exon-scaffold_58-1491911889:1243206..1243332 | TCONS_00071043-exon-scaffold_58-1491911889:1243206..1243332 | Clytia hemisphaerica | exon |
| TCONS_00071043-exon-scaffold_58-1491911889:1236631..1236841 | TCONS_00071043-exon-scaffold_58-1491911889:1236631..1236841 | Clytia hemisphaerica | exon |
| TCONS_00071043-exon-scaffold_58-1491911889:1235251..1235912 | TCONS_00071043-exon-scaffold_58-1491911889:1235251..1235912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1235251..1243332 - |
Blast
The following BLAST results are available for this feature:
|
