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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070841 ID=TCONS_00070841|Name=TCONS_00070841|organism=Clytia hemisphaerica|type=transcript|length=2876bp ATTATTCATAGAAAGTTCGATAAAGTAGCAATGCAAACGAAAGACAGAAT GTTTCAAGAAAGGCAGAAGTACAAACTATCAGcaaCATCGATTACGATTC GTTTCTCCTTGAAATGGAGCAATCTTATGTGAAATTGAAGATCgccgaaa aagaagaaaaattacgcAGAGAcagagaaaagaaaacaatgaaGCCAGTC AACGGGACCGCTCAAAAAGATGGGAAATATTTCCTTGTCAGATTAGAAAT GGAGGTAGAAAAAATCAACAGCCTAATAAACTCAACTGAGAAAGATTCGA GGCTGGCACAGCTTCCTGATGAAGCATCTGGTAAAATTCGGAATGCCGTT GGAAAAGCACATTTACTACTCAACAAACGATTCAAACAGTTCCGAGAATT ATGCAGGGATAATATTGAAAATGACCCTGACAAGAAAGAAACGAAGTCTT CAGACCTTCAAGGTTATTGGGACATGATGTATATACAAATCGAAGATGTT CACGCGCTCTTCAACGATATCGACAAATTGCGCGCCAACAATTGGCTTGT TACGGAAGATGCAACGGACGGATATCTCAAACCTCAGGATGACACGAAGA AAGGAAGCTCCTCTACCCCAAAAGGCAAACGCAAATCCACCGGAAAATCA CCGAGGACAAAAACAAAGACGATAGATGACGAAAAAGTCAAACGAGAGGC GCGCTCTAGGTTAGTGGCCGCGCGGAAACAAGCCAAATTACGCGCACAGC AAGAAGCGACCGCTAGCAATGGAGGTTCACCGGATGACGGTTCACCAGAT GAAGGTTCACCGGATTCGTCTATAAACGGCTCACTGAATGGATCATGGAC AGctgataaaaatgaagaagcagCAAATTCTTCTTTGAACACTTCTCTTA ATTCTTCCTCCAATTCTTCTTCCGTGGAACTTTTGAGTAATGGAGTTGAT TCGCTTGACATCGCTGCTGAGTCGAGGCCTGTTCTAAAGCCTAACATTGA GGTCAATAGCGTTGCATAGCCATATTGTTTTGACTCAAACCCTGTTGTTG ACGTAATTATGAAATGATGACCCATattgtttatttaattttgatAGTCC CTCACATAAAAAAATTGCATTCaaattaaaaggaaaaattttttaatatt attttcggtgttttttttttttaataaagttttttCGTTGTTTTATGTTT ACCTCACATACATAACGTTATTTTAATGAATCTCAGTATTTTTTAAATTA CTATTATTATTGTTAGTATTTTAAGCAATTATCGGACGGTGTCGGACAAA GGTACAGTAGAATGGACCTTTGACTTCGTTTGAGTAAGGTATCGCAATGG TTGGCTTCCATACTACCTCGTATCATTAGTAATTCTTTGATTAACTTGAC TGATGAGTTATCAATCGATTGCTCCGGTATGGATGAgctatttccaaatt ttggacATCGACATTTTCAGCCTTTAACCTTGTCACAAAATATTCTTCTT GTTAGCATCTTGggcttttgtttacttttttccagattgtttttctgttt gaccagtttgacttttcacttttctcTTGAGTATCCCGTCAAAGATTTGC CCACAAACTTAAACAGTCTGttatttaaagaatattttgggacgcaattt tttaagtttggtcaagatattttcattgtttttacttCTCTATGTCTTAT TGTTAATCTTTATTGTATATACCTTTTTATTACAATGATGTTTTAAGTTT TTATACAAGTCTAATCATCctctattttttgttttgttgatgtGAATCTG TCGTGAAGGATGCGTTTTCGAGAGAAGCGGAATCTCGGTTTGCATTTTGA AAAGCTTGAACcacaaagatttttctttttgacatgCAGTGtgtaaattg aaagaaatttagTAAACTTTCCTAAtctaaaaaccatttttttgaaGCGA CATAAGATTTAcgacatttttttatatatcatgTTCTCTGTGTATAGTCT GGAATTGTTGATACCGTCAAATAAANGGTTGGCTTCCATACTACCTCGTA TCATTAGTAATTCTTTGATTAACTTGACTGATGAGTTATCAATCGATTGC TCCGGTATGGATGAgctatttccaaattttggacATCGACATTTTCAGCC TTTAACCTTGTCACAAAATATTCTTCTTGTTAGTATCTTGGGCTtttggg tcaagctggagtttttacaagttctttgactCTGTTGGTcattaaatgtt gagacaaacgattttattactttctaaagaacgtgtcactcctattgttt aaaaataaccaatcagttaagcatcttgtaaaaactccagcccatcccgg gcttttgtttacttttttccagattgtttttctgtttgacttttcacttt tctcTTGAGTATCCCATCAAAGAGTTGCCCAGAAAAACAAACTTAAACag tctcttatttaaaaaaatatattttgggacgcaatttttgaagtttggtc aagatattttcattgtttttaccTCTATGTTTTATTGTTGATCTTTATTG TATATACCTTTTTATTACAATGATGTTTTAAGTTTTTATACAAGTCTAAT TTCTCTATTTTTCGTTTTGTTGATGTAAATCTGTCGTGAAGGATGTGTTT TCGAGAGAGGCGGAATCTCAGTTTGCATTATGAAAAGCTTGAACcacaaa gatttttctttttgacatgCACTGTAAATTGAAACAAATTTAGTAAACTT TCCTAAtctaaaaaccatttttttgaaaCGACATAAGATTTAcgacattt ttttatatatcatgTTCTCTGTGTATAGTCTGGAATTGTTGATACcgtca aataaaataaagaaaatttcaatcaa Run BLAST on NCBI transcript from alignment at scaffold_58:821834..826752+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070841 ID=TCONS_00070841|Name=TCONS_00070841|organism=Clytia hemisphaerica|type=transcript|length=4919bp|location=Sequence derived from alignment at scaffold_58:821834..826752+ (Clytia hemisphaerica) ATTATTCATAGAAAGTTCGATAAAGTAGCAATGCAAACGAAAGACAGAAT
GTTTCAAGAAAGGCAGAAGTACAAACTATCAGGTTggattataaagtttt
taagtTCAATAGAAATTTAGTGTAAGTCGACCTTTCCTAATCTGTTTCAA
GTCAAATATCAGTTTTCGAGCTGTTTTGTTTAACCTTGCAAATTACTGAT
CAACCCTTTGTAAGAGTTTGTATCTGAATAAACGTATTTTATAAActcgt
ttgtttttttcttttagcaaCATCGATTACGATTCGTTTCTCCTTGAAAT
GGAGCAATCTTATGTGAAATTGAAGATCgccgaaaaagaagaaaaattac
gcAGAGAcagagaaaagaaaacaatgaaGCCAGTCAACGGGACCGCTCAA
AAAGATGGGAAATATTTCCTTGTCAGATTAGAAATGGAGGTAGAAAAAAT
CAACAGCCTAATAAACTCAACTGAGAAAGATTCGAGGCTGGCACAGCTTC
CTGATGAAGGTTTGTaattctcttttattttttttgcaagcATCATTATG
ATTTTGTTTGATTAGTAATGACTTTTAAAACATGAGCAATCACATTTCAT
TTTATGAtgattaatattttcttttcctaAATAAACGGTTAgagattttt
ctctttttcatgtCAAACTTTCACCTCTGTGGCTCGCGAGCTTCACAAAT
CTTGCTTTTGATTTAACAAAGTTGTTAATATTTGATGAACAACGAACAGT
GAGCTATTGGAAGTTTGAAATAACATGTAAACTTGTTTTCATTCTCCAAT
AGTGATTCattcagcttttcaaaaataggTTTTGATTGATAAATAACCAG
AATAGATTCATCATATAAATCATTTACATCCAGGTGCCCTTTTGGTCTGC
TGCTCACATTTTCGAATCAAAGCAATAGAATCTATTTTTCGATTCATACA
GATGTTTCTATACTGACAGGTGTCTGATATTAATCACCGTTAGAAGCATG
TTGCTCTTTTAGCTTATTTGGTTTTCATTataatttcgatattttttgaG
GTCACTTAAAAATATTTCCAGTAAAAAATCAACCCTTCTTTCATGCCTGT
GTGAAAATTGTATTCAAGACATTTCCTTATAAAGCCTCGTCGTTGCTAAA
TTGTCCGGTATGTATATTGAAATCTGCATTTCCGCTGCTTAAAATGGTAA
TTGATCCCACTATAATCAGTTACTAATTAATTCAATTTGAATCAGGGTGA
TTACACTATAATTACAACAATTTATTGATCCaattagaataactttttat
cccCCTATCGTAAAGCATGCTTTTAGTCTCATTATCGAAAAGTTATTTTA
AGTGACCATTCTGACTCTTTTTAGCATCTGGTAAAATTCGGAATGCCGTT
GGAAAAGCACATTTACTACTCAACAAACGATTCAAACAGTTCCGAGAATT
ATGCAGGGATAATATTGTAAGNCGACAGGTGTCTGATATGTAATCACCGT
TAGAAGCATGTTGCTCTTTTAGCTTATTTGGTTTTCATTataatttcgat
attttttaagGTCACTTAAAAATATTTCCAGTAAAAAATCAACCCTTCTT
TTATGCCTGTGTGAAAATTGTATTCAAGACATTTCCTTATAAAGCCTCGT
CGTTGCTAAATTATCCGGTATGTATATTGAAATCTGCATTTCCGCTGCTT
AAAATGGTAATTGATCCCACTATAATCAGTTACTAATTAATTCAATTTGA
ATCAGGGGGATTACACTATAATTACAACAATTTATTGATCCaattagaat
aactttttatcccCCTATCGTAAAGCATGCTTTTAGTCTCATTATCGAAA
AGTTATTTTAAGTGACCATTCTGACTCTTTTTAGCATCTGGTAAAATTCG
GAATGCCGTTGGAAAAGCACATTTACTACTCAACAAACGATTCAAACAGT
TCCGAGAATTATGCAGGGATAATATTGTAAGTCTTATATAGTTCACGATG
ATTTGATTTTAGGCCTCTTTGAAAATAAGGCTCTCGGTAGTTAGGtcatt
tttgaattaaggcaGAGAATTCTCTAATCTATGTATGAAACATCAAATTC
TTCAATGTCTTTTTCAGGAAAATGACCCTGACAAGAAAGAAACGAAGTCT
TCAGACCTTCAAGGTTATTGGGACATGATGTATATACAAATCGAAGATGT
TCACGCGCTCTTCAACGATATCGACAAATTGCGCGCCAACAATTGGCTTG
TTACGGAAGATGCAACGGACGGATATCTCAAACCTCAGGTGAGAATGAAA
TCTTTCTGTTTTGATTTCTTGGTTCTCATTTCTTGTTTTTTCACATCTAA
CAACAAGCAATTTCTTAGAGCTTTAGTTATTTCTTcttgtttacaaattt
tcttcTCAATTGTTCTTTTAGAATTATTTAGGAAGCTTTTTTGACAAAGT
TTACACAAGAAAACAAATGTTAAAATCTACTTAGATATGACAATCAGCTG
ACAATGAAACCGAGCCCTCGTTGAACCTTTTTTCAATCTTAGATGAAATA
AACACGTTTGTGTTGTCTCAACAAACAGTTGATTCTAATCGCATTACTAA
TCACATTTTCCCGATATTATTTTATCTCAGGATGACACGAAGAAAGGAAG
CTCCTCTACCCCAAAAGGCAAACGCAAATCCACCGGAAAATCACCGAGGA
CAAAAACAAAGACGATAGATGACGAAAAAGTCAAACGAGAGGCGCGCTCT
AGGTTAGTGGCCGCGCGGAAACAAGCCAAATTACGCGCACAGCAAGAAGC
GACCGCTAGCAATGGAGGTTCACCGGATGACGGTTCACCAGATGAAGGTT
CACCGGATTCGTCTATAAACGGCTCACTGAATGGATCATGGACAGctgat
aaaaatgaagaagcagCAAATTCTTCTTTGAACACTTCTCTTAATTCTTC
CTCCAATTCTTCTTCCGTGGAACTTTTGAGTAATGGAGTTGATTCGCTTG
ACATCGCTGCTGAGTCGAGGCCTGTTCTAAAGCCTAACATTGAGGTCAAT
AGCGTTGCATAGCCATATTGTTTTGACTCAAACCCTGTTGTTGACGTAAT
TATGAAATGATGACCCATattgtttatttaattttgatAGTCCCTCACAT
AAAAAAATTGCATTCaaattaaaaggaaaaattttttaatattattttcg
gtgttttttttttttaataaagttttttCGTTGTTTTATGTTTACCTCAC
ATACATAACGTTATTTTAATGAATCTCAGTATTTTTTAAATTACTATTAT
TATTGTTAGTATTTTAAGCAATTATCGGACGGTGTCGGACAAAGGTACAG
TAGAATGGACCTTTGACTTCGTTTGAGTAAGGTATCGCAATGGTTGGCTT
CCATACTACCTCGTATCATTAGTAATTCTTTGATTAACTTGACTGATGAG
TTATCAATCGATTGCTCCGGTATGGATGAgctatttccaaattttggacA
TCGACATTTTCAGCCTTTAACCTTGTCACAAAATATTCTTCTTGTTAGCA
TCTTGggcttttgtttacttttttccagattgtttttctgtttgaccagt
ttgacttttcacttttctcTTGAGTATCCCGTCAAAGATTTGCCCACAAA
CTTAAACAGTCTGttatttaaagaatattttgggacgcaattttttaagt
ttggtcaagatattttcattgtttttacttCTCTATGTCTTATTGTTAAT
CTTTATTGTATATACCTTTTTATTACAATGATGTTTTAAGTTTTTATACA
AGTCTAATCATCctctattttttgttttgttgatgtGAATCTGTCGTGAA
GGATGCGTTTTCGAGAGAAGCGGAATCTCGGTTTGCATTTTGAAAAGCTT
GAACcacaaagatttttctttttgacatgCAGTGtgtaaattgaaagaaa
tttagTAAACTTTCCTAAtctaaaaaccatttttttgaaGCGACATAAGA
TTTAcgacatttttttatatatcatgTTCTCTGTGTATAGTCTGGAATTG
TTGATACCGTCAAATAAANGGTTGGCTTCCATACTACCTCGTATCATTAG
TAATTCTTTGATTAACTTGACTGATGAGTTATCAATCGATTGCTCCGGTA
TGGATGAgctatttccaaattttggacATCGACATTTTCAGCCTTTAACC
TTGTCACAAAATATTCTTCTTGTTAGTATCTTGGGCTtttgggtcaagct
ggagtttttacaagttctttgactCTGTTGGTcattaaatgttgagacaa
acgattttattactttctaaagaacgtgtcactcctattgtttaaaaata
accaatcagttaagcatcttgtaaaaactccagcccatcccgggcttttg
tttacttttttccagattgtttttctgtttgacttttcacttttctcTTG
AGTATCCCATCAAAGAGTTGCCCAGAAAAACAAACTTAAACagtctctta
tttaaaaaaatatattttgggacgcaatttttgaagtttggtcaagatat
tttcattgtttttaccTCTATGTTTTATTGTTGATCTTTATTGTATATAC
CTTTTTATTACAATGATGTTTTAAGTTTTTATACAAGTCTAATTTCTCTA
TTTTTCGTTTTGTTGATGTAAATCTGTCGTGAAGGATGTGTTTTCGAGAG
AGGCGGAATCTCAGTTTGCATTATGAAAAGCTTGAACcacaaagattttt
ctttttgacatgCACTGTAAATTGAAACAAATTTAGTAAACTTTCCTAAt
ctaaaaaccatttttttgaaaCGACATAAGATTTAcgacatttttttata
tatcatgTTCTCTGTGTATAGTCTGGAATTGTTGATACcgtcaaataaaa
taaagaaaatttcaatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070841-exon-scaffold_58-1491911889:821834..821915 | TCONS_00070841-exon-scaffold_58-1491911889:821834..821915 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1510915933:821834..821915 | TCONS_00070841-exon-scaffold_58-1510915933:821834..821915 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1575043694:821834..821915 | TCONS_00070841-exon-scaffold_58-1575043694:821834..821915 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1491911889:822101..822342 | TCONS_00070841-exon-scaffold_58-1491911889:822101..822342 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1510915933:822101..822342 | TCONS_00070841-exon-scaffold_58-1510915933:822101..822342 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1575043694:822101..822342 | TCONS_00070841-exon-scaffold_58-1575043694:822101..822342 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1491911889:823208..823299 | TCONS_00070841-exon-scaffold_58-1491911889:823208..823299 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1510915933:823208..823299 | TCONS_00070841-exon-scaffold_58-1510915933:823208..823299 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1575043694:823208..823299 | TCONS_00070841-exon-scaffold_58-1575043694:823208..823299 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1491911889:823951..824121 | TCONS_00070841-exon-scaffold_58-1491911889:823951..824121 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1510915933:823951..824121 | TCONS_00070841-exon-scaffold_58-1510915933:823951..824121 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1575043694:823951..824121 | TCONS_00070841-exon-scaffold_58-1575043694:823951..824121 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1491911889:824464..826752 | TCONS_00070841-exon-scaffold_58-1491911889:824464..826752 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1510915933:824464..826752 | TCONS_00070841-exon-scaffold_58-1510915933:824464..826752 | Clytia hemisphaerica | exon |
TCONS_00070841-exon-scaffold_58-1575043694:824464..826752 | TCONS_00070841-exon-scaffold_58-1575043694:824464..826752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_58 | supercontig | scaffold_58:821834..826752 + |
Blast
BLAST of TCONS_00070841 vs. Swiss-Prot (Human)
Match: DLGP1 (Disks large-associated protein 1 OS=Homo sapiens GN=DLGAP1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 4.156e-21 Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 3
Query: 210 AQKDGKYFLVRLEMEVEKINSLINSTEKDSRLAQLPDEASGKIRNAVGKAHLLLNKRFKQFRELCRDNIENDPDKKETKSSDLQGYWDMMYIQIEDVHALFNDIDKLRANNW 545
+DG +FL L+ E +++ E++ R LP++ GKIR AVG A LL+ ++F QFRELC +N+ + + T S DL G+WDM+ + IE++ F+++ +L+ANNW
Sbjct: 789 CHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHPRPT-SQDLAGFWDMLQLSIENISMKFDELHQLKANNW 899
The following BLAST results are available for this feature:
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