TCONS_00070841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070841
Unique NameTCONS_00070841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070841 ID=TCONS_00070841|Name=TCONS_00070841|organism=Clytia hemisphaerica|type=transcript|length=2876bp
ATTATTCATAGAAAGTTCGATAAAGTAGCAATGCAAACGAAAGACAGAAT
GTTTCAAGAAAGGCAGAAGTACAAACTATCAGcaaCATCGATTACGATTC
GTTTCTCCTTGAAATGGAGCAATCTTATGTGAAATTGAAGATCgccgaaa
aagaagaaaaattacgcAGAGAcagagaaaagaaaacaatgaaGCCAGTC
AACGGGACCGCTCAAAAAGATGGGAAATATTTCCTTGTCAGATTAGAAAT
GGAGGTAGAAAAAATCAACAGCCTAATAAACTCAACTGAGAAAGATTCGA
GGCTGGCACAGCTTCCTGATGAAGCATCTGGTAAAATTCGGAATGCCGTT
GGAAAAGCACATTTACTACTCAACAAACGATTCAAACAGTTCCGAGAATT
ATGCAGGGATAATATTGAAAATGACCCTGACAAGAAAGAAACGAAGTCTT
CAGACCTTCAAGGTTATTGGGACATGATGTATATACAAATCGAAGATGTT
CACGCGCTCTTCAACGATATCGACAAATTGCGCGCCAACAATTGGCTTGT
TACGGAAGATGCAACGGACGGATATCTCAAACCTCAGGATGACACGAAGA
AAGGAAGCTCCTCTACCCCAAAAGGCAAACGCAAATCCACCGGAAAATCA
CCGAGGACAAAAACAAAGACGATAGATGACGAAAAAGTCAAACGAGAGGC
GCGCTCTAGGTTAGTGGCCGCGCGGAAACAAGCCAAATTACGCGCACAGC
AAGAAGCGACCGCTAGCAATGGAGGTTCACCGGATGACGGTTCACCAGAT
GAAGGTTCACCGGATTCGTCTATAAACGGCTCACTGAATGGATCATGGAC
AGctgataaaaatgaagaagcagCAAATTCTTCTTTGAACACTTCTCTTA
ATTCTTCCTCCAATTCTTCTTCCGTGGAACTTTTGAGTAATGGAGTTGAT
TCGCTTGACATCGCTGCTGAGTCGAGGCCTGTTCTAAAGCCTAACATTGA
GGTCAATAGCGTTGCATAGCCATATTGTTTTGACTCAAACCCTGTTGTTG
ACGTAATTATGAAATGATGACCCATattgtttatttaattttgatAGTCC
CTCACATAAAAAAATTGCATTCaaattaaaaggaaaaattttttaatatt
attttcggtgttttttttttttaataaagttttttCGTTGTTTTATGTTT
ACCTCACATACATAACGTTATTTTAATGAATCTCAGTATTTTTTAAATTA
CTATTATTATTGTTAGTATTTTAAGCAATTATCGGACGGTGTCGGACAAA
GGTACAGTAGAATGGACCTTTGACTTCGTTTGAGTAAGGTATCGCAATGG
TTGGCTTCCATACTACCTCGTATCATTAGTAATTCTTTGATTAACTTGAC
TGATGAGTTATCAATCGATTGCTCCGGTATGGATGAgctatttccaaatt
ttggacATCGACATTTTCAGCCTTTAACCTTGTCACAAAATATTCTTCTT
GTTAGCATCTTGggcttttgtttacttttttccagattgtttttctgttt
gaccagtttgacttttcacttttctcTTGAGTATCCCGTCAAAGATTTGC
CCACAAACTTAAACAGTCTGttatttaaagaatattttgggacgcaattt
tttaagtttggtcaagatattttcattgtttttacttCTCTATGTCTTAT
TGTTAATCTTTATTGTATATACCTTTTTATTACAATGATGTTTTAAGTTT
TTATACAAGTCTAATCATCctctattttttgttttgttgatgtGAATCTG
TCGTGAAGGATGCGTTTTCGAGAGAAGCGGAATCTCGGTTTGCATTTTGA
AAAGCTTGAACcacaaagatttttctttttgacatgCAGTGtgtaaattg
aaagaaatttagTAAACTTTCCTAAtctaaaaaccatttttttgaaGCGA
CATAAGATTTAcgacatttttttatatatcatgTTCTCTGTGTATAGTCT
GGAATTGTTGATACCGTCAAATAAANGGTTGGCTTCCATACTACCTCGTA
TCATTAGTAATTCTTTGATTAACTTGACTGATGAGTTATCAATCGATTGC
TCCGGTATGGATGAgctatttccaaattttggacATCGACATTTTCAGCC
TTTAACCTTGTCACAAAATATTCTTCTTGTTAGTATCTTGGGCTtttggg
tcaagctggagtttttacaagttctttgactCTGTTGGTcattaaatgtt
gagacaaacgattttattactttctaaagaacgtgtcactcctattgttt
aaaaataaccaatcagttaagcatcttgtaaaaactccagcccatcccgg
gcttttgtttacttttttccagattgtttttctgtttgacttttcacttt
tctcTTGAGTATCCCATCAAAGAGTTGCCCAGAAAAACAAACTTAAACag
tctcttatttaaaaaaatatattttgggacgcaatttttgaagtttggtc
aagatattttcattgtttttaccTCTATGTTTTATTGTTGATCTTTATTG
TATATACCTTTTTATTACAATGATGTTTTAAGTTTTTATACAAGTCTAAT
TTCTCTATTTTTCGTTTTGTTGATGTAAATCTGTCGTGAAGGATGTGTTT
TCGAGAGAGGCGGAATCTCAGTTTGCATTATGAAAAGCTTGAACcacaaa
gatttttctttttgacatgCACTGTAAATTGAAACAAATTTAGTAAACTT
TCCTAAtctaaaaaccatttttttgaaaCGACATAAGATTTAcgacattt
ttttatatatcatgTTCTCTGTGTATAGTCTGGAATTGTTGATACcgtca
aataaaataaagaaaatttcaatcaa
Run BLAST on NCBI

transcript from alignment at scaffold_58:821834..826752+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070841 ID=TCONS_00070841|Name=TCONS_00070841|organism=Clytia hemisphaerica|type=transcript|length=4919bp|location=Sequence derived from alignment at scaffold_58:821834..826752+ (Clytia hemisphaerica)
ATTATTCATAGAAAGTTCGATAAAGTAGCAATGCAAACGAAAGACAGAAT
GTTTCAAGAAAGGCAGAAGTACAAACTATCAGGTTggattataaagtttt
taagtTCAATAGAAATTTAGTGTAAGTCGACCTTTCCTAATCTGTTTCAA
GTCAAATATCAGTTTTCGAGCTGTTTTGTTTAACCTTGCAAATTACTGAT
CAACCCTTTGTAAGAGTTTGTATCTGAATAAACGTATTTTATAAActcgt
ttgtttttttcttttagcaaCATCGATTACGATTCGTTTCTCCTTGAAAT
GGAGCAATCTTATGTGAAATTGAAGATCgccgaaaaagaagaaaaattac
gcAGAGAcagagaaaagaaaacaatgaaGCCAGTCAACGGGACCGCTCAA
AAAGATGGGAAATATTTCCTTGTCAGATTAGAAATGGAGGTAGAAAAAAT
CAACAGCCTAATAAACTCAACTGAGAAAGATTCGAGGCTGGCACAGCTTC
CTGATGAAGGTTTGTaattctcttttattttttttgcaagcATCATTATG
ATTTTGTTTGATTAGTAATGACTTTTAAAACATGAGCAATCACATTTCAT
TTTATGAtgattaatattttcttttcctaAATAAACGGTTAgagattttt
ctctttttcatgtCAAACTTTCACCTCTGTGGCTCGCGAGCTTCACAAAT
CTTGCTTTTGATTTAACAAAGTTGTTAATATTTGATGAACAACGAACAGT
GAGCTATTGGAAGTTTGAAATAACATGTAAACTTGTTTTCATTCTCCAAT
AGTGATTCattcagcttttcaaaaataggTTTTGATTGATAAATAACCAG
AATAGATTCATCATATAAATCATTTACATCCAGGTGCCCTTTTGGTCTGC
TGCTCACATTTTCGAATCAAAGCAATAGAATCTATTTTTCGATTCATACA
GATGTTTCTATACTGACAGGTGTCTGATATTAATCACCGTTAGAAGCATG
TTGCTCTTTTAGCTTATTTGGTTTTCATTataatttcgatattttttgaG
GTCACTTAAAAATATTTCCAGTAAAAAATCAACCCTTCTTTCATGCCTGT
GTGAAAATTGTATTCAAGACATTTCCTTATAAAGCCTCGTCGTTGCTAAA
TTGTCCGGTATGTATATTGAAATCTGCATTTCCGCTGCTTAAAATGGTAA
TTGATCCCACTATAATCAGTTACTAATTAATTCAATTTGAATCAGGGTGA
TTACACTATAATTACAACAATTTATTGATCCaattagaataactttttat
cccCCTATCGTAAAGCATGCTTTTAGTCTCATTATCGAAAAGTTATTTTA
AGTGACCATTCTGACTCTTTTTAGCATCTGGTAAAATTCGGAATGCCGTT
GGAAAAGCACATTTACTACTCAACAAACGATTCAAACAGTTCCGAGAATT
ATGCAGGGATAATATTGTAAGNCGACAGGTGTCTGATATGTAATCACCGT
TAGAAGCATGTTGCTCTTTTAGCTTATTTGGTTTTCATTataatttcgat
attttttaagGTCACTTAAAAATATTTCCAGTAAAAAATCAACCCTTCTT
TTATGCCTGTGTGAAAATTGTATTCAAGACATTTCCTTATAAAGCCTCGT
CGTTGCTAAATTATCCGGTATGTATATTGAAATCTGCATTTCCGCTGCTT
AAAATGGTAATTGATCCCACTATAATCAGTTACTAATTAATTCAATTTGA
ATCAGGGGGATTACACTATAATTACAACAATTTATTGATCCaattagaat
aactttttatcccCCTATCGTAAAGCATGCTTTTAGTCTCATTATCGAAA
AGTTATTTTAAGTGACCATTCTGACTCTTTTTAGCATCTGGTAAAATTCG
GAATGCCGTTGGAAAAGCACATTTACTACTCAACAAACGATTCAAACAGT
TCCGAGAATTATGCAGGGATAATATTGTAAGTCTTATATAGTTCACGATG
ATTTGATTTTAGGCCTCTTTGAAAATAAGGCTCTCGGTAGTTAGGtcatt
tttgaattaaggcaGAGAATTCTCTAATCTATGTATGAAACATCAAATTC
TTCAATGTCTTTTTCAGGAAAATGACCCTGACAAGAAAGAAACGAAGTCT
TCAGACCTTCAAGGTTATTGGGACATGATGTATATACAAATCGAAGATGT
TCACGCGCTCTTCAACGATATCGACAAATTGCGCGCCAACAATTGGCTTG
TTACGGAAGATGCAACGGACGGATATCTCAAACCTCAGGTGAGAATGAAA
TCTTTCTGTTTTGATTTCTTGGTTCTCATTTCTTGTTTTTTCACATCTAA
CAACAAGCAATTTCTTAGAGCTTTAGTTATTTCTTcttgtttacaaattt
tcttcTCAATTGTTCTTTTAGAATTATTTAGGAAGCTTTTTTGACAAAGT
TTACACAAGAAAACAAATGTTAAAATCTACTTAGATATGACAATCAGCTG
ACAATGAAACCGAGCCCTCGTTGAACCTTTTTTCAATCTTAGATGAAATA
AACACGTTTGTGTTGTCTCAACAAACAGTTGATTCTAATCGCATTACTAA
TCACATTTTCCCGATATTATTTTATCTCAGGATGACACGAAGAAAGGAAG
CTCCTCTACCCCAAAAGGCAAACGCAAATCCACCGGAAAATCACCGAGGA
CAAAAACAAAGACGATAGATGACGAAAAAGTCAAACGAGAGGCGCGCTCT
AGGTTAGTGGCCGCGCGGAAACAAGCCAAATTACGCGCACAGCAAGAAGC
GACCGCTAGCAATGGAGGTTCACCGGATGACGGTTCACCAGATGAAGGTT
CACCGGATTCGTCTATAAACGGCTCACTGAATGGATCATGGACAGctgat
aaaaatgaagaagcagCAAATTCTTCTTTGAACACTTCTCTTAATTCTTC
CTCCAATTCTTCTTCCGTGGAACTTTTGAGTAATGGAGTTGATTCGCTTG
ACATCGCTGCTGAGTCGAGGCCTGTTCTAAAGCCTAACATTGAGGTCAAT
AGCGTTGCATAGCCATATTGTTTTGACTCAAACCCTGTTGTTGACGTAAT
TATGAAATGATGACCCATattgtttatttaattttgatAGTCCCTCACAT
AAAAAAATTGCATTCaaattaaaaggaaaaattttttaatattattttcg
gtgttttttttttttaataaagttttttCGTTGTTTTATGTTTACCTCAC
ATACATAACGTTATTTTAATGAATCTCAGTATTTTTTAAATTACTATTAT
TATTGTTAGTATTTTAAGCAATTATCGGACGGTGTCGGACAAAGGTACAG
TAGAATGGACCTTTGACTTCGTTTGAGTAAGGTATCGCAATGGTTGGCTT
CCATACTACCTCGTATCATTAGTAATTCTTTGATTAACTTGACTGATGAG
TTATCAATCGATTGCTCCGGTATGGATGAgctatttccaaattttggacA
TCGACATTTTCAGCCTTTAACCTTGTCACAAAATATTCTTCTTGTTAGCA
TCTTGggcttttgtttacttttttccagattgtttttctgtttgaccagt
ttgacttttcacttttctcTTGAGTATCCCGTCAAAGATTTGCCCACAAA
CTTAAACAGTCTGttatttaaagaatattttgggacgcaattttttaagt
ttggtcaagatattttcattgtttttacttCTCTATGTCTTATTGTTAAT
CTTTATTGTATATACCTTTTTATTACAATGATGTTTTAAGTTTTTATACA
AGTCTAATCATCctctattttttgttttgttgatgtGAATCTGTCGTGAA
GGATGCGTTTTCGAGAGAAGCGGAATCTCGGTTTGCATTTTGAAAAGCTT
GAACcacaaagatttttctttttgacatgCAGTGtgtaaattgaaagaaa
tttagTAAACTTTCCTAAtctaaaaaccatttttttgaaGCGACATAAGA
TTTAcgacatttttttatatatcatgTTCTCTGTGTATAGTCTGGAATTG
TTGATACCGTCAAATAAANGGTTGGCTTCCATACTACCTCGTATCATTAG
TAATTCTTTGATTAACTTGACTGATGAGTTATCAATCGATTGCTCCGGTA
TGGATGAgctatttccaaattttggacATCGACATTTTCAGCCTTTAACC
TTGTCACAAAATATTCTTCTTGTTAGTATCTTGGGCTtttgggtcaagct
ggagtttttacaagttctttgactCTGTTGGTcattaaatgttgagacaa
acgattttattactttctaaagaacgtgtcactcctattgtttaaaaata
accaatcagttaagcatcttgtaaaaactccagcccatcccgggcttttg
tttacttttttccagattgtttttctgtttgacttttcacttttctcTTG
AGTATCCCATCAAAGAGTTGCCCAGAAAAACAAACTTAAACagtctctta
tttaaaaaaatatattttgggacgcaatttttgaagtttggtcaagatat
tttcattgtttttaccTCTATGTTTTATTGTTGATCTTTATTGTATATAC
CTTTTTATTACAATGATGTTTTAAGTTTTTATACAAGTCTAATTTCTCTA
TTTTTCGTTTTGTTGATGTAAATCTGTCGTGAAGGATGTGTTTTCGAGAG
AGGCGGAATCTCAGTTTGCATTATGAAAAGCTTGAACcacaaagattttt
ctttttgacatgCACTGTAAATTGAAACAAATTTAGTAAACTTTCCTAAt
ctaaaaaccatttttttgaaaCGACATAAGATTTAcgacatttttttata
tatcatgTTCTCTGTGTATAGTCTGGAATTGTTGATACcgtcaaataaaa
taaagaaaatttcaatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044064XLOC_044064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070841-exon-scaffold_58-1491911889:821834..821915TCONS_00070841-exon-scaffold_58-1491911889:821834..821915Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1510915933:821834..821915TCONS_00070841-exon-scaffold_58-1510915933:821834..821915Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1575043694:821834..821915TCONS_00070841-exon-scaffold_58-1575043694:821834..821915Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1491911889:822101..822342TCONS_00070841-exon-scaffold_58-1491911889:822101..822342Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1510915933:822101..822342TCONS_00070841-exon-scaffold_58-1510915933:822101..822342Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1575043694:822101..822342TCONS_00070841-exon-scaffold_58-1575043694:822101..822342Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1491911889:823208..823299TCONS_00070841-exon-scaffold_58-1491911889:823208..823299Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1510915933:823208..823299TCONS_00070841-exon-scaffold_58-1510915933:823208..823299Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1575043694:823208..823299TCONS_00070841-exon-scaffold_58-1575043694:823208..823299Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1491911889:823951..824121TCONS_00070841-exon-scaffold_58-1491911889:823951..824121Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1510915933:823951..824121TCONS_00070841-exon-scaffold_58-1510915933:823951..824121Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1575043694:823951..824121TCONS_00070841-exon-scaffold_58-1575043694:823951..824121Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1491911889:824464..826752TCONS_00070841-exon-scaffold_58-1491911889:824464..826752Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1510915933:824464..826752TCONS_00070841-exon-scaffold_58-1510915933:824464..826752Clytia hemisphaericaexon
TCONS_00070841-exon-scaffold_58-1575043694:824464..826752TCONS_00070841-exon-scaffold_58-1575043694:824464..826752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:821834..826752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.554933	0	0	0	0	0	9.81442e-09	0.0043762	0.00533253	1.00978	0.0458016	0	0	0	6.28795e-06	3.4362e-08	0.00441487	1.64773e-07	7.45893e-07	1.0159e-06	0	0	0	0	0.903238	0	0	0.601963
Blast
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BLAST of TCONS_00070841 vs. Swiss-Prot (Human)
Match: DLGP1 (Disks large-associated protein 1 OS=Homo sapiens GN=DLGAP1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.156e-21
Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 3 
Query:  210 AQKDGKYFLVRLEMEVEKINSLINSTEKDSRLAQLPDEASGKIRNAVGKAHLLLNKRFKQFRELCRDNIENDPDKKETKSSDLQGYWDMMYIQIEDVHALFNDIDKLRANNW 545
              +DG +FL  L+ E +++       E++ R   LP++  GKIR AVG A LL+ ++F QFRELC +N+  +   + T S DL G+WDM+ + IE++   F+++ +L+ANNW
Sbjct:  789 CHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHPRPT-SQDLAGFWDMLQLSIENISMKFDELHQLKANNW 899
The following BLAST results are available for this feature:
BLAST of TCONS_00070841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DLGP14.156e-2139.29Disks large-associated protein 1 OS=Homo sapiens G... [more]
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