TCONS_00070820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070820
Unique NameTCONS_00070820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070820 ID=TCONS_00070820|Name=TCONS_00070820|organism=Clytia hemisphaerica|type=transcript|length=1404bp
caGCTCTTCTTAATAAACAAAGGACGTGAAAATAATGAGAACTCTTTACA
ATTTATGATTTGGTggtttttcaaaggaaaacaaaatcatGTTATTATTG
GAAACTAAATTTTCTTCTTCCAGATAAAAAGATAATAAATATGATAAGAT
TTGCAGTGGTGCACCGAGCGAAAGATGGCCTTGCATTGTCTGCTTCAACT
GATGTGGACTCAGGGGTTGAGTTGAGAGACAGCAAAAGATATGCCAAAAT
ACTTTCGCGCAAAGCAAGACAGTTTCCTGTTCGATGTACCATGACAGTTG
GTAGATTCAAGATATACTTTACAACAGAAGTTGGTGTATGTTTCTTAATG
ATTTGTGAGATCAACTTGGCAGCAGTGTTGGCGTTCAGTTTTGTGGACGA
ATTGAAGAGAGAGTTCACCACACAATACACAAGGGGAGCTGTAGATAAAG
CCATTCGACCCTACTCTTTTATCGCTTTCGACAGTTTCATTCAGAAGACG
AAAACAAAGTACAACAACACACGAACACTTTACACCAGAATCGACCTCAC
AGACATCAGTGAAGAACTGAAAAATAATCCTCCTTATGAAATCACCGAAA
AAGATTTGAATTCGTCTGCAGCGGGAGTTGGAGGGGGTGTCATCCAAAAC
TCCGTTTCGAATGCCGCGAAAAATATCCTGAAAGCAACTTCAAATGGCAG
TGCTACACACATCCTGCCTCCAAAATTCAAGATGGATGCGATGACAACGA
GTAATTATGTGGCGGTGATGGTCTGTTTACTGTGTGGTATCATGAATATC
GTTCGTTTGGTCCCATTCCTCTCACAAGTCGACATGGAGGATGAGaCACA
TTGGTTATCGATCAGTTTTGCGTTCTTCACTTCAGCAGTTATCAACTTCT
TACAGtgtTATGTTTTATATTCACCAATTCAAAGGCGGAGCATTGCAAAC
GTTGGTTGTTTCTTGACTAGTCTGATATCGCTTTATTATTTATTCGACTT
GCGAAATATTTATCAGGTCCTTTTCCACTTCTCCGCTTCACTCTTCATGG
CATTCAATATTTGGAAGAGACCCATCCTCGATGATTATGTTGGTGCTGGA
GAAGATATTTTGTTGTTACGTCGAACAGATCAAGAAAGTGGGAGGTACAA
ACTGGAGAACTTTAAAGACAAACGGATCATGGTCATGGACAGAGAAAGAA
GTTTGCTTATTGCTTCTGATCAAAACAAATTGAACTTTGGGTTTATAGAT
TTTTGGTGTACCTACTATGACGATAATACTGATTGTTTAGGTAATTTAAT
TAAAGTATAAAGATCACTTTatcgaaattttacaaaaaaaataacgaCTG
CAGAAATTTTCTTCTATTCCTAATATCTTGGAATTAGGGCGTGCTCGTCT
AACG
Run BLAST on NCBI

protein sequence of TCONS_00070820-protein

>TCONS_00070820-protein ID=TCONS_00070820-protein|Name=TCONS_00070820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MIRFAVVHRAKDGLALSASTDVDSGVELRDSKRYAKILSRKARQFPVRCT
MTVGRFKIYFTTEVGVCFLMICEINLAAVLAFSFVDELKREFTTQYTRGA
VDKAIRPYSFIAFDSFIQKTKTKYNNTRTLYTRIDLTDISEELKNNPPYE
ITEKDLNSSAAGVGGGVIQNSVSNAAKNILKATSNGSATHILPPKFKMDA
MTTSNYVAVMVCLLCGIMNIVRLVPFLSQVDMEDETHWLSISFAFFTSAV
INFLQCYVLYSPIQRRSIANVGCFLTSLISLYYLFDLRNIYQVLFHFSAS
LFMAFNIWKRPILDDYVGAGEDILLLRRTDQESGRYKLENFKDKRIMVMD
RERSLLIASDQNKLNFGFIDFWCTYYDDNTDCLGNLIKV
Run BLAST on NCBI

transcript from alignment at scaffold_58:662098..668815+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070820 ID=TCONS_00070820|Name=TCONS_00070820|organism=Clytia hemisphaerica|type=transcript|length=6718bp|location=Sequence derived from alignment at scaffold_58:662098..668815+ (Clytia hemisphaerica)
caGCTCTTCTTAATAAACAAAGGACGTGAAAATAATGAGAACTCTTTACA
ATTTATGATTTGGTggtttttcaaaggaaaacaaaatcatGTTATTATTG
GAAACTAAATTTTCTTCTTCCAGATAAAAAGATAATAAATATGATAAGAT
TTGCAGTGGTGCACCGAGCGAAAGATGGCCTTGCATTGTCTGCTTCAACT
GATGTGGACTCAGGGGTTGAGTTGAGAGACAGCAAAAGATATGCCAAAAT
ACTTTCGCGCAAAGCAAGACAGTTTCCTGTTCGATGTACCATGACAGTTG
GTAGATTCAAGATATAGTATGTACTCTGTTCTTTTCCATGAACCTTATTG
TGCAACCAATATGGGGAAATCTTGAAAGAATgaaacatttattttaaaat
tcgAAGTCAAAAAAATACATTACTTCAACGGGAAGAATGAAGGCTTTTTT
AGTTAATTGTATAAAGCCTGAAGCAAACTTCTCAGGAGGAACAAAATCCC
TTAGTATCAAAATCActgaaaaatttataaatatctCAAAATAATACAGA
TTTTTTCCAATAAACACCTGTATGACAAATTATCAAGGAACTTGTTTGAT
TTCTTGCCTTTTTTGCCAACTTGTTTTCCTCAATTGATTGGGTGCTGTAT
TTACTTTTTAATAAACAAGGAGGTTTACTGAAAACCTATTTCGCCTCTTA
TTATTCGATTTAAACGATTGAAAAGGAAAATGTATGTCACGTGATCTCCC
AGAAAAGAAATACCAAAATGCTAAGTTTCATAAAAGAAAGATACTGTATC
CGctctttattattattaagtTTCATAAAAGAATTAGGTTCCAAATTAAG
TTCTAAGATTAATATAATTGCTAATAATGAAGATCACATAAGTGAACCTA
GAACTTCATTTCAAAAATGCTTTTCCTGTTTTTTTAGCTTTACAACAGAA
GTTGGTGTATGTTTCTTAATGATTTGTGAGATCAACTTGGCAGCAGTGTT
GGCGTTCAGTTTTGTGGACGAATTGAAGAGAGAGTTCACCACACAATACA
CAAGGGGAGCTGTAGATAAAGCCATTCGACCCTACTCTTTTATCGCTTTC
GGTAAGAGTTTCCTTTCAAGCTTTTTTAGATATATCTGTCAAGTGAAAAA
CTTTTTACTAAACTACATGTATAGTATTAGAAAAAAGGTAGGGGAACCAG
TCTTGATAGAGACACTTGGAGATAATTGATCTAATATTAAAACTTTTTGG
ATTAAATCCCATTTTTAAGTATATACTGGAAAAATAtggtttttaaaggt
tttgtttttaaataagagtgatacgTCGTTTGTTTACTCGTCAATTTTTt
gacaagctttttcacattggattgacacggatgtggagcaagattggtca
gaaagagaaaaaagaaaaacatttaatttagTACTAAATCGAACACGATA
AAACAAAAGGAAACACCGGCCATGATATAAGACATATGCGTCAAATCTGA
AACGGGAAAACGTAAAAAACTTGAAAACAGTTTTCTAGAATTATTTCAGC
TATTTTAAATCGCGAATAGCCCCCAATTTTCTTGTTGGACTTGATTAGGC
TTTTCCTCTATGTTTTTTGTTTGCTAAGAGGACAAGGTGATAGTCGgttg
tattttcaaaaattgatttcattttgtttgACAAATTGAATTTGGTTTGT
TGTTGATCTTCTGTTTCTATGCCCGCCATCTTGTTTATGTAACGTTGACT
GGTCGTGAAGTGAAGTGACCAGTACTCACTTCAGCAATAAGAACAACTTG
AAAAGTCAATGTAAATCTTTTTGAACAATCATTGTGTATAATAGGAGGGT
TATATCACTCTAAGAGAACTGTCGTTGGTGATGCTCAAGATTTGAAGCTT
CTTAACAGGGAGGTTTTTTAATGTCCAACCTGGAGATCACATTTGATGGC
TTTTGGCTAAACTGGATGTCAATCGCCTACTGAGTTGCCCATCAATGTGG
AACGCGGGGGAAGGGAAGCCTTCTCACAAAGGCATCAAAATCCGACGTTA
CAAAGATGACGGCAGTTCAATGACTTCAAAAAAGACGAACAAATGGTATC
TGATCCTTTTTTTGTCAGGGTACTTTTTGCCGCTATCAGTAGGCACAAGG
AATGAGGTTTTAATTAATgaagaaaacttttaatttttttcattttgcaa
tTTATTTCATGTTGGTTTGACACAGTATAGTAAAATACAAATTGATACca
atataatgaaaaaaaagttcaacatttaaattttttaatcctCAAAAATG
TTCAACATTCGAATTTCTTGACCCTAGAAAATGTTCAGCATTTGAATTTA
TTGACTTTCAAAGGTTCGTCACTCGCCACAACACGGTTAGCGGCGGAAGC
AGTGAAATCTAATCTGGTGACCGCCTCAATCTCGCATCTTGCAAACAAGG
AGACAAACATTTTGGCCATGTTCAGTGAGATGTACTGTCCCAAACATTTT
CGATTGTTCACTTTCGGTCTTTGGTTGAACGGACCTCCAAAAGcaatgaa
attttctttgatgTGATCTTGACTTCCGGTGACGCTAAANTCCAAACTGG
TGACCGCCTCAATCTCGCATCTTGCAAACAAGGAGACAAACATTTTGGCC
ATGTTCAGTGAGATGTACTGTCCCAAACATTTTCGATTGTTCACTTTCGG
TCTTTGGTTGAACGGACCTCCAAAAGcaatgaaattttctttgatgTGAT
CTTGACTTCCGGTGACGCTAAACAGATTCGGTAAACGGAAAGTCTCTGGA
TCTCTTTGTGTTCCGTACGAAAAACCGGTCAGAAATGAACCTTTTTTCAC
CTTGTATCTTCCTTGTAATGAGTCCAACAGGAAATCCTTCTTGGCTCGTC
TGAAGACTTGAGTGACCGGAGGAAGAAAGCGGAAGACCTCAACCACGAAC
CGGTCCACCACATCAAACGCTTCTAATTTTTCGCCCATGTTCTGCCCGTC
CATTCGATTGAAGATGTCTACTTCATTCGAAATCCTCCCTTTTGTACGTT
CGTCCAAATTCAAGAAGAGGGGAATTGTGGAAGATAAACCGCTTCTTAAT
GCGAAAGCTGAGAAAACGAAGACGAAGAAAAGAGCCTCACTTTTCAAGGT
GTCTGCGCTTCGTTTATCTCGCTTCAAGAGTTTGGGAAGAACGTTCTTCG
CCCACGGTGTACTTTCTAGGTAAGCGTACATTTGATCGGTAACCTGCTGA
CCCAAAGCATCGAATTTGAGATCCGGAGTACTCTTCGGTGTTACTCCTTT
ACTGAACCAGATGAAGAATATTTTGAGGTCCAAATCGAAAGGTTTATCTA
AGAAGAATTCGCTGAGCGTGCGAACGGTGACGGCATCAATCAGGTTTTCG
ACGTTCGTTTGATTGTCTTTGATGAGAGGAAGAACGCTTTGCCAGTGTTT
CTTCAGCAAGTTGAACAAACCTTCGTTCCCATACTTCTTTTCTGCGCGTC
TTAGAATGCGCCACATGCCTCTCTTCTTTCGAATTTTCTCAAAACCGTTG
GTGGAAGCGGAAGAGAGATAACCTTTCAAATTGAATGCGTTTACGGTAAA
CAAGCCGGCGTCCGTCGATTTTTCTATCAACGTCTTATCGTACATTACTT
GGATTGCCACCGGGTCTCCGAGAATAATCCGCTCTTCAAACAATTTCAAC
TTGAAAACTCCCAAACCGCTTTCCCTTTGCAATTCATGCAAATAAAATGA
GCCTTTGATTTGAGCGAGATTTGCCAGGTTTACCCTTGCATCTGGACTTC
CAGCGAAAGGAACTTCTGGATAAGCCTTCGCTCGGCCGCCCTCTTTGTGT
TGATTTTGGCGACCATTTCTATAAAAGTGATGACTTGAATACCAAGACGC
ATCATGGAGAGCTTCATGACCTTCAATGAGAGATAAAATGCTCAAGAACA
AGGCCAGCGTTGTTAGTCCTTTCATCTTCAAAATGAATTGAACGAACAAA
TCAATATCAAGATGTTCTATCATTGTATAAATAGTTTTTTAACAACCGGA
AATGGCCAAACCGAGAATTGTAGATCATATTTcctgaataaaaaaacatc
CTTTTTAAACGTCCAATTTGCAGACCATTGCTCATTAAATGTTATGTAAA
CAACCATCATATATTTCACATTAAATCATGCAAACCTAGAACAGTTCCAG
TAATAATGCCAACGttctatttttatttcagcCATTGATTTTCATTCAAC
CCGATTCGTCCTACAGTTATCTTTGTCATAGCATTTTGTCATCTCATATT
AGACCAACAAATTATTAACTTGCTTGTTTTGATGCGAAGATTTATTTATG
CACTTTGAATTGCCAACCCTCTTTTTAAGCATGTGTAGATTGACAAACCC
CATTCATGATCATGCGCAGTAAACGTTTTGTCCGTTTCTTTTTTCAGACA
GTTTCATTCAGAAGACGAAAACAAAGTACAACAACACACGAACACTTTAC
ACCAGAATCGACCTCACAGACATCAGTGAAGAACTGAAAAATAATCCTCC
TTATGAAATCACCGAAAAAGATTTGAATTCGTCTGCAGCGGGAGTTGGAG
GGGGTGTCATCCAAAACTCCGTTTCGAATGCCGCGAAAAATATCCTGAAA
GCAACTTCAAATGGCAGTGCTACACACATCCTGCGTGAGTTCTTCAAATA
GCTATCATTGATCAACGTATGTGCAGCATTTAGATCTCTTTCCACTCGCT
TACTACAATCAgggtcgaaatatattgggaATTTAGGTTAGGAATtttaa
ttcctcgttttcagcaatttaaagttcgggtgaaaaagtcgcttttgggc
aaattgataTATTTGTTCGAATATTttaatttgggaggggtttatagact
tccaggtNaaattgataaattttttcgaatattttgatttgggaggggtt
tttatcttccaggctatattctgaaccctattggaccattcttggacttt
tagtTCTTTAGTaattaagtctagcgttaaaactcagagttaaaactcca
cccgtccaacctaatttagagcgcttccaaatcgtttttGGTTGTAAAGT
TTCGTGgaaatttacctttttttcaattattatgactttgattgtatcTA
CCCAAGAATATATTATCACGATCTCGTTACCTCTTTTTACTTTTCAGCTC
CAAAATTCAAGATGGATGCGATGACAACGAGTAATTATGTGGCGGTGATG
GTCTGTTTACTGTGTGGTATCATGAATATCGTTCGTTTGGTCCCATTCCT
CTCACAAGTCGACATGGAGGATGAGGTCCGTCCCTTTTTTATcctttaca
cgctttttttataagaatacactttataagaatgtccacgatgaaaatgg
ccgaaaaattaagaatatggtaagaatatcaccatcatggaatttagcaa
cttaacttaagaatgccatttttaatgcattttaacctgtagattgccaa
tttcgatcttaacctaagaataccgtaagaatatttttggatgattttcg
tcaaaaagtttagaatatccatgatgaaatgaaaaaaacaccattcttat
aaaaaaaagcatgtattcTAGAAAGTATCTCAGCTTGAAAATGTTTATTA
GCGCATTTGCGGAATTTTTGGCTCATTTTTAACTGAAGAAAGATGAAGAT
GATGCCATTCTTCTGACGAGGGAAATATTTAACAtgtctctttttttttg
ttttgcagaCACATTGGTTATCGATCAGTTTTGCGTTCTTCACTTCAGCA
GTTATCAACTTCTTACAGGTAATCACGATCAGCCAATTAACTAAGAGATG
GTAGAAAGAATATGTACAGGATGATCTAGTGTCACCTTGCCTTACTCATA
CTTTTTAGTCTTCCCATTCCGACCTGTGCATAGTTTTGGGTTTGTTTTTA
GTTTGTGGTTGAAAGttatgtcagttaggaacagACAGCTTGTTTGAGAT
TTGGTTGAATCAGTCTATTCCTGTAAATTCTGCTAAATTTGAATttgcat
ttttcttttattttcagtgtTATGTTTTATATTCACCAATTCAAAGGCGG
AGCATTGCAAACGTTGGTTGTTTCTTGACTAGTCTGATATCGCTTTATTA
TTTATTCGACTTGCGAAATATTTATCAGGTCCTTTTCCACTTCTCCGCTT
CACTCTTCATGGCATTCAATATTTGGAAGAGACCCATCCTCGGTAAGCTT
CCCAATTATAACGTATGATGCTGCTCCAGGTGTTTACGATTTAATCTGAA
CAAGATTGGAAGGGTTATTTTGTTCTCTCGAAAGGAACAGGGATGCTACT
AATAATACTTTAATTATCGGCTCAAGCGAAGGGATTATTTTTAGATGATT
ATGTTGGTGCTGGAGAAGATATTTTGTTGTTACGTCGAACAGATCAAGAA
AGTGGGAGGTACAAACTGGAGAACTTTAAAGACAAACGGATCATGGTCAT
GGACAGAGAAAGAAGTTTGCTTATTGCTTCTGATCAAAACAAATTGAACT
TTGGGTTTATAGATTTTTGGTGTACCTACTATGACGATAATACTGATTGT
TTAGGTAATTTAATTAAAGTATAAAGATCACTTTatcgaaattttacaaa
aaaaataacgaCTGCAGAAATTTTCTTCTATTCCTAATATCTTGGAATTA
GGGCGTGCTCGTCTAACG

Coding sequence (CDS) from alignment at scaffold_58:662098..668815+

>TCONS_00070820 ID=TCONS_00070820|Name=TCONS_00070820|organism=Clytia hemisphaerica|type=CDS|length=8190bp|location=Sequence derived from alignment at scaffold_58:662098..668815+ (Clytia hemisphaerica)
ATGATAAGATTTGCAGTGGTGCACCGAGCGAAAGATGGCCTTGCATTGTC
TGCTTCAACTGATGTGGACTCAGGGGTTGAGTTGAGAGACAGCAAAAGAT
ATGCCAAAATACTTTCGCGCAAAGCAAGACAGTTTCCTGTTCGATGTACC
ATGACAGTTGGTAGATTCAAGATATACTTTACAACAGAAGTTGGTGTATG
TTTCTTAATGATTTGTGAGATCAACTTGGCAGCAGTGTTGGCGTTCAGTT
TTGTGGACGAATTGAAGAGAGAGTTCACCACACAATACACAAGGGGAGCT
GTAGATAAAGCCATTCGACCCTACTCTTTTATCGCTTTCGACAGTTTCAT
TCAGAAGACGAAAACAAAGTACAACAACACACGAACACTTTACACCAGAA
TCGACCTCACAGACATCAGTGAAGAACTGAAAAATAATCCTCCTTATGAA
ATCACCGAAAAAGATTTGAATTCGTCTGCAGCGGGAGTTGGAGGGGGTGT
CATCCAAAACTCCGTTTCGAATGCCGCGAAAAATATCCTGAAAGCAACTT
CAAATGGCAGTGCTACACACATCCTGCCTCCAAAATTCAAGATGGATGCG
ATGACAACGAGTAATTATGTGGCGGTGATGGTCTGTTTACTGTGTGGTAT
CATGAATATCGTTCGTTTGGTCCCATTCCTCTCACAAGTCGACATGGAGG
ATGAGaCACATTGGTTATCGATCAGTTTTGCGTTCTTCACTTCAGCAGTT
ATCAACTTCTTACAGtgtTATGTTTTATATTCACCAATTCAAAGGCGGAG
CATTGCAAACGTTGGTTGTTTCTTGACTAGTCTGATATCGCTTTATTATT
TATTCGACTTGCGAAATATTTATCAGGTCCTTTTCCACTTCTCCGCTTCA
CTCTTCATGGCATTCAATATTTGGAAGAGACCCATCCTCGATGATTATGT
TGGTGCTGGAGAAGATATTTTGTTGTTACGTCGAACAGATCAAGAAAGTG
GGAGGTACAAACTGGAGAACTTTAAAGACAAACGGATCATGGTCATGGAC
AGAGAAAGAAGTTTGCTTATTGCTTCTGATCAAAACAAATTGAACTTTGG
GTTTATAGATTTTTGGTGTACCTACTATGACGATAATACTGATTGTTTAG
GTAATTTAATTAAAGTATAAATGATAAGATTTGCAGTGGTGCACCGAGCG
AAAGATGGCCTTGCATTGTCTGCTTCAACTGATGTGGACTCAGGGGTTGA
GTTGAGAGACAGCAAAAGATATGCCAAAATACTTTCGCGCAAAGCAAGAC
AGTTTCCTGTTCGATGTACCATGACAGTTGGTAGATTCAAGATATACTTT
ACAACAGAAGTTGGTGTATGTTTCTTAATGATTTGTGAGATCAACTTGGC
AGCAGTGTTGGCGTTCAGTTTTGTGGACGAATTGAAGAGAGAGTTCACCA
CACAATACACAAGGGGAGCTGTAGATAAAGCCATTCGACCCTACTCTTTT
ATCGCTTTCGACAGTTTCATTCAGAAGACGAAAACAAAGTACAACAACAC
ACGAACACTTTACACCAGAATCGACCTCACAGACATCAGTGAAGAACTGA
AAAATAATCCTCCTTATGAAATCACCGAAAAAGATTTGAATTCGTCTGCA
GCGGGAGTTGGAGGGGGTGTCATCCAAAACTCCGTTTCGAATGCCGCGAA
AAATATCCTGAAAGCAACTTCAAATGGCAGTGCTACACACATCCTGCCTC
CAAAATTCAAGATGGATGCGATGACAACGAGTAATTATGTGGCGGTGATG
GTCTGTTTACTGTGTGGTATCATGAATATCGTTCGTTTGGTCCCATTCCT
CTCACAAGTCGACATGGAGGATGAGaCACATTGGTTATCGATCAGTTTTG
CGTTCTTCACTTCAGCAGTTATCAACTTCTTACAGtgtTATGTTTTATAT
TCACCAATTCAAAGGCGGAGCATTGCAAACGTTGGTTGTTTCTTGACTAG
TCTGATATCGCTTTATTATTTATTCGACTTGCGAAATATTTATCAGGTCC
TTTTCCACTTCTCCGCTTCACTCTTCATGGCATTCAATATTTGGAAGAGA
CCCATCCTCGATGATTATGTTGGTGCTGGAGAAGATATTTTGTTGTTACG
TCGAACAGATCAAGAAAGTGGGAGGTACAAACTGGAGAACTTTAAAGACA
AACGGATCATGGTCATGGACAGAGAAAGAAGTTTGCTTATTGCTTCTGAT
CAAAACAAATTGAACTTTGGGTTTATAGATTTTTGGTGTACCTACTATGA
CGATAATACTGATTGTTTAGGTAATTTAATTAAAGTATAAATGATAAGAT
TTGCAGTGGTGCACCGAGCGAAAGATGGCCTTGCATTGTCTGCTTCAACT
GATGTGGACTCAGGGGTTGAGTTGAGAGACAGCAAAAGATATGCCAAAAT
ACTTTCGCGCAAAGCAAGACAGTTTCCTGTTCGATGTACCATGACAGTTG
GTAGATTCAAGATATACTTTACAACAGAAGTTGGTGTATGTTTCTTAATG
ATTTGTGAGATCAACTTGGCAGCAGTGTTGGCGTTCAGTTTTGTGGACGA
ATTGAAGAGAGAGTTCACCACACAATACACAAGGGGAGCTGTAGATAAAG
CCATTCGACCCTACTCTTTTATCGCTTTCGACAGTTTCATTCAGAAGACG
AAAACAAAGTACAACAACACACGAACACTTTACACCAGAATCGACCTCAC
AGACATCAGTGAAGAACTGAAAAATAATCCTCCTTATGAAATCACCGAAA
AAGATTTGAATTCGTCTGCAGCGGGAGTTGGAGGGGGTGTCATCCAAAAC
TCCGTTTCGAATGCCGCGAAAAATATCCTGAAAGCAACTTCAAATGGCAG
TGCTACACACATCCTGCCTCCAAAATTCAAGATGGATGCGATGACAACGA
GTAATTATGTGGCGGTGATGGTCTGTTTACTGTGTGGTATCATGAATATC
GTTCGTTTGGTCCCATTCCTCTCACAAGTCGACATGGAGGATGAGaCACA
TTGGTTATCGATCAGTTTTGCGTTCTTCACTTCAGCAGTTATCAACTTCT
TACAGtgtTATGTTTTATATTCACCAATTCAAAGGCGGAGCATTGCAAAC
GTTGGTTGTTTCTTGACTAGTCTGATATCGCTTTATTATTTATTCGACTT
GCGAAATATTTATCAGGTCCTTTTCCACTTCTCCGCTTCACTCTTCATGG
CATTCAATATTTGGAAGAGACCCATCCTCGATGATTATGTTGGTGCTGGA
GAAGATATTTTGTTGTTACGTCGAACAGATCAAGAAAGTGGGAGGTACAA
ACTGGAGAACTTTAAAGACAAACGGATCATGGTCATGGACAGAGAAAGAA
GTTTGCTTATTGCTTCTGATCAAAACAAATTGAACTTTGGGTTTATAGAT
TTTTGGTGTACCTACTATGACGATAATACTGATTGTTTAGGTAATTTAAT
TAAAGTATAAATGATAAGATTTGCAGTGGTGCACCGAGCGAAAGATGGCC
TTGCATTGTCTGCTTCAACTGATGTGGACTCAGGGGTTGAGTTGAGAGAC
AGCAAAAGATATGCCAAAATACTTTCGCGCAAAGCAAGACAGTTTCCTGT
TCGATGTACCATGACAGTTGGTAGATTCAAGATATACTTTACAACAGAAG
TTGGTGTATGTTTCTTAATGATTTGTGAGATCAACTTGGCAGCAGTGTTG
GCGTTCAGTTTTGTGGACGAATTGAAGAGAGAGTTCACCACACAATACAC
AAGGGGAGCTGTAGATAAAGCCATTCGACCCTACTCTTTTATCGCTTTCG
ACAGTTTCATTCAGAAGACGAAAACAAAGTACAACAACACACGAACACTT
TACACCAGAATCGACCTCACAGACATCAGTGAAGAACTGAAAAATAATCC
TCCTTATGAAATCACCGAAAAAGATTTGAATTCGTCTGCAGCGGGAGTTG
GAGGGGGTGTCATCCAAAACTCCGTTTCGAATGCCGCGAAAAATATCCTG
AAAGCAACTTCAAATGGCAGTGCTACACACATCCTGCCTCCAAAATTCAA
GATGGATGCGATGACAACGAGTAATTATGTGGCGGTGATGGTCTGTTTAC
TGTGTGGTATCATGAATATCGTTCGTTTGGTCCCATTCCTCTCACAAGTC
GACATGGAGGATGAGaCACATTGGTTATCGATCAGTTTTGCGTTCTTCAC
TTCAGCAGTTATCAACTTCTTACAGtgtTATGTTTTATATTCACCAATTC
AAAGGCGGAGCATTGCAAACGTTGGTTGTTTCTTGACTAGTCTGATATCG
CTTTATTATTTATTCGACTTGCGAAATATTTATCAGGTCCTTTTCCACTT
CTCCGCTTCACTCTTCATGGCATTCAATATTTGGAAGAGACCCATCCTCG
ATGATTATGTTGGTGCTGGAGAAGATATTTTGTTGTTACGTCGAACAGAT
CAAGAAAGTGGGAGGTACAAACTGGAGAACTTTAAAGACAAACGGATCAT
GGTCATGGACAGAGAAAGAAGTTTGCTTATTGCTTCTGATCAAAACAAAT
TGAACTTTGGGTTTATAGATTTTTGGTGTACCTACTATGACGATAATACT
GATTGTTTAGGTAATTTAATTAAAGTATAAATGATAAGATTTGCAGTGGT
GCACCGAGCGAAAGATGGCCTTGCATTGTCTGCTTCAACTGATGTGGACT
CAGGGGTTGAGTTGAGAGACAGCAAAAGATATGCCAAAATACTTTCGCGC
AAAGCAAGACAGTTTCCTGTTCGATGTACCATGACAGTTGGTAGATTCAA
GATATACTTTACAACAGAAGTTGGTGTATGTTTCTTAATGATTTGTGAGA
TCAACTTGGCAGCAGTGTTGGCGTTCAGTTTTGTGGACGAATTGAAGAGA
GAGTTCACCACACAATACACAAGGGGAGCTGTAGATAAAGCCATTCGACC
CTACTCTTTTATCGCTTTCGACAGTTTCATTCAGAAGACGAAAACAAAGT
ACAACAACACACGAACACTTTACACCAGAATCGACCTCACAGACATCAGT
GAAGAACTGAAAAATAATCCTCCTTATGAAATCACCGAAAAAGATTTGAA
TTCGTCTGCAGCGGGAGTTGGAGGGGGTGTCATCCAAAACTCCGTTTCGA
ATGCCGCGAAAAATATCCTGAAAGCAACTTCAAATGGCAGTGCTACACAC
ATCCTGCCTCCAAAATTCAAGATGGATGCGATGACAACGAGTAATTATGT
GGCGGTGATGGTCTGTTTACTGTGTGGTATCATGAATATCGTTCGTTTGG
TCCCATTCCTCTCACAAGTCGACATGGAGGATGAGaCACATTGGTTATCG
ATCAGTTTTGCGTTCTTCACTTCAGCAGTTATCAACTTCTTACAGtgtTA
TGTTTTATATTCACCAATTCAAAGGCGGAGCATTGCAAACGTTGGTTGTT
TCTTGACTAGTCTGATATCGCTTTATTATTTATTCGACTTGCGAAATATT
TATCAGGTCCTTTTCCACTTCTCCGCTTCACTCTTCATGGCATTCAATAT
TTGGAAGAGACCCATCCTCGATGATTATGTTGGTGCTGGAGAAGATATTT
TGTTGTTACGTCGAACAGATCAAGAAAGTGGGAGGTACAAACTGGAGAAC
TTTAAAGACAAACGGATCATGGTCATGGACAGAGAAAGAAGTTTGCTTAT
TGCTTCTGATCAAAACAAATTGAACTTTGGGTTTATAGATTTTTGGTGTA
CCTACTATGACGATAATACTGATTGTTTAGGTAATTTAATTAAAGTATAA
ATGATAAGATTTGCAGTGGTGCACCGAGCGAAAGATGGCCTTGCATTGTC
TGCTTCAACTGATGTGGACTCAGGGGTTGAGTTGAGAGACAGCAAAAGAT
ATGCCAAAATACTTTCGCGCAAAGCAAGACAGTTTCCTGTTCGATGTACC
ATGACAGTTGGTAGATTCAAGATATACTTTACAACAGAAGTTGGTGTATG
TTTCTTAATGATTTGTGAGATCAACTTGGCAGCAGTGTTGGCGTTCAGTT
TTGTGGACGAATTGAAGAGAGAGTTCACCACACAATACACAAGGGGAGCT
GTAGATAAAGCCATTCGACCCTACTCTTTTATCGCTTTCGACAGTTTCAT
TCAGAAGACGAAAACAAAGTACAACAACACACGAACACTTTACACCAGAA
TCGACCTCACAGACATCAGTGAAGAACTGAAAAATAATCCTCCTTATGAA
ATCACCGAAAAAGATTTGAATTCGTCTGCAGCGGGAGTTGGAGGGGGTGT
CATCCAAAACTCCGTTTCGAATGCCGCGAAAAATATCCTGAAAGCAACTT
CAAATGGCAGTGCTACACACATCCTGCCTCCAAAATTCAAGATGGATGCG
ATGACAACGAGTAATTATGTGGCGGTGATGGTCTGTTTACTGTGTGGTAT
CATGAATATCGTTCGTTTGGTCCCATTCCTCTCACAAGTCGACATGGAGG
ATGAGaCACATTGGTTATCGATCAGTTTTGCGTTCTTCACTTCAGCAGTT
ATCAACTTCTTACAGtgtTATGTTTTATATTCACCAATTCAAAGGCGGAG
CATTGCAAACGTTGGTTGTTTCTTGACTAGTCTGATATCGCTTTATTATT
TATTCGACTTGCGAAATATTTATCAGGTCCTTTTCCACTTCTCCGCTTCA
CTCTTCATGGCATTCAATATTTGGAAGAGACCCATCCTCGATGATTATGT
TGGTGCTGGAGAAGATATTTTGTTGTTACGTCGAACAGATCAAGAAAGTG
GGAGGTACAAACTGGAGAACTTTAAAGACAAACGGATCATGGTCATGGAC
AGAGAAAGAAGTTTGCTTATTGCTTCTGATCAAAACAAATTGAACTTTGG
GTTTATAGATTTTTGGTGTACCTACTATGACGATAATACTGATTGTTTAG
GTAATTTAATTAAAGTATAAATGATAAGATTTGCAGTGGTGCACCGAGCG
AAAGATGGCCTTGCATTGTCTGCTTCAACTGATGTGGACTCAGGGGTTGA
GTTGAGAGACAGCAAAAGATATGCCAAAATACTTTCGCGCAAAGCAAGAC
AGTTTCCTGTTCGATGTACCATGACAGTTGGTAGATTCAAGATATACTTT
ACAACAGAAGTTGGTGTATGTTTCTTAATGATTTGTGAGATCAACTTGGC
AGCAGTGTTGGCGTTCAGTTTTGTGGACGAATTGAAGAGAGAGTTCACCA
CACAATACACAAGGGGAGCTGTAGATAAAGCCATTCGACCCTACTCTTTT
ATCGCTTTCGACAGTTTCATTCAGAAGACGAAAACAAAGTACAACAACAC
ACGAACACTTTACACCAGAATCGACCTCACAGACATCAGTGAAGAACTGA
AAAATAATCCTCCTTATGAAATCACCGAAAAAGATTTGAATTCGTCTGCA
GCGGGAGTTGGAGGGGGTGTCATCCAAAACTCCGTTTCGAATGCCGCGAA
AAATATCCTGAAAGCAACTTCAAATGGCAGTGCTACACACATCCTGCCTC
CAAAATTCAAGATGGATGCGATGACAACGAGTAATTATGTGGCGGTGATG
GTCTGTTTACTGTGTGGTATCATGAATATCGTTCGTTTGGTCCCATTCCT
CTCACAAGTCGACATGGAGGATGAGaCACATTGGTTATCGATCAGTTTTG
CGTTCTTCACTTCAGCAGTTATCAACTTCTTACAGtgtTATGTTTTATAT
TCACCAATTCAAAGGCGGAGCATTGCAAACGTTGGTTGTTTCTTGACTAG
TCTGATATCGCTTTATTATTTATTCGACTTGCGAAATATTTATCAGGTCC
TTTTCCACTTCTCCGCTTCACTCTTCATGGCATTCAATATTTGGAAGAGA
CCCATCCTCGATGATTATGTTGGTGCTGGAGAAGATATTTTGTTGTTACG
TCGAACAGATCAAGAAAGTGGGAGGTACAAACTGGAGAACTTTAAAGACA
AACGGATCATGGTCATGGACAGAGAAAGAAGTTTGCTTATTGCTTCTGAT
CAAAACAAATTGAACTTTGGGTTTATAGATTTTTGGTGTACCTACTATGA
CGATAATACTGATTGTTTAGGTAATTTAATTAAAGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044058XLOC_044058Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070820-proteinTCONS_00070820-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070820-exon-scaffold_58-1491911889:662098..662413TCONS_00070820-exon-scaffold_58-1491911889:662098..662413Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1510915933:662098..662413TCONS_00070820-exon-scaffold_58-1510915933:662098..662413Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1575043694:662098..662413TCONS_00070820-exon-scaffold_58-1575043694:662098..662413Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1491911889:663035..663198TCONS_00070820-exon-scaffold_58-1491911889:663035..663198Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1510915933:663035..663198TCONS_00070820-exon-scaffold_58-1510915933:663035..663198Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1575043694:663035..663198TCONS_00070820-exon-scaffold_58-1575043694:663035..663198Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1491911889:666545..666781TCONS_00070820-exon-scaffold_58-1491911889:666545..666781Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1510915933:666545..666781TCONS_00070820-exon-scaffold_58-1510915933:666545..666781Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1575043694:666545..666781TCONS_00070820-exon-scaffold_58-1575043694:666545..666781Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1491911889:667295..667422TCONS_00070820-exon-scaffold_58-1491911889:667295..667422Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1510915933:667295..667422TCONS_00070820-exon-scaffold_58-1510915933:667295..667422Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1575043694:667295..667422TCONS_00070820-exon-scaffold_58-1575043694:667295..667422Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1491911889:667856..667915TCONS_00070820-exon-scaffold_58-1491911889:667856..667915Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1510915933:667856..667915TCONS_00070820-exon-scaffold_58-1510915933:667856..667915Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1575043694:667856..667915TCONS_00070820-exon-scaffold_58-1575043694:667856..667915Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1491911889:668165..668339TCONS_00070820-exon-scaffold_58-1491911889:668165..668339Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1510915933:668165..668339TCONS_00070820-exon-scaffold_58-1510915933:668165..668339Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1575043694:668165..668339TCONS_00070820-exon-scaffold_58-1575043694:668165..668339Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1491911889:668492..668815TCONS_00070820-exon-scaffold_58-1491911889:668492..668815Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1510915933:668492..668815TCONS_00070820-exon-scaffold_58-1510915933:668492..668815Clytia hemisphaericaexon
TCONS_00070820-exon-scaffold_58-1575043694:668492..668815TCONS_00070820-exon-scaffold_58-1575043694:668492..668815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:662098..668815 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
77.4432	76.474	54.4485	52.2883	9.43318	9.5082	18.9491	22.0163	20.6505	18.718	17.1047	15.4914	11.8049	12.1539	16.0329	16.1814	20.9099	21.2192	9.13727	11.3051	16.2681	14.8554	42.7393	39.4684	23.994	21.9723	13.5438	11.4354	29.1915	31.2012
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010908Longin_dom
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
Blast
[Close]
BLAST of TCONS_00070820 vs. Swiss-Prot (Human)
Match: SC22A (Vesicle-trafficking protein SEC22a OS=Homo sapiens GN=SEC22A PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 9.456e-64
Identity = 122/318 (38.36%), Postives = 181/318 (56.92%), Query Frame = 3 
Query:  135 INMIRFAVVHRAKDGLALSASTDVDSGVELRDSKRYAKILSRKARQFPVRCTMTVGRFKIYFTTEVGVCFLMICEINLAAVLAFSFVDELKREFTTQYTRGAVDKAIRPYSFIAFDSFIQKTKTKYNNTRTLYTRIDLTDISEELKNNPPYEITEKDLNSSAAGVGGGVIQNSVSNAAKNILKATSNGSATHILPPKFKMDAMTTSNYVAVMVCLLCGIMNIVR---LVPFLSQVDMEDETHWLSISFAFFTSAVINFLQCYVLYSPIQRRSIANVGCFLT-SLISL--YYLFDLRNIYQVLFHFSASLFMAFNIWKR 1070
            ++MI  A V R +DGL LSASTD +    +++ ++Y K+LSRK  Q P RCT+  G + I F + +GV ++M+C  N   VLAFSF+DEL++EF T Y     + A+RPY FI FD+FIQ+TK +YNN R+L T+I+L+D+  E+K  PPY+I+  +L S+          N V++A     K     S+ H      +++  T S  V  ++ LLCG +N++R    +  L Q D +D  + +    AFF        QCY+L   +      NV  FLT  LI L   YL++LRN++Q+ FH +   F+   IW R
Sbjct:    1 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSA----------NGVTSAFSVDCKGAGKISSAHQ-----RLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYII----AFFLGTAACLYQCYLL---VYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLR 296
The following BLAST results are available for this feature:
BLAST of TCONS_00070820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC22A9.456e-6438.36Vesicle-trafficking protein SEC22a OS=Homo sapiens... [more]
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