TCONS_00070778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070778
Unique NameTCONS_00070778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2008

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070778 ID=TCONS_00070778|Name=TCONS_00070778|organism=Clytia hemisphaerica|type=transcript|length=2008bp
ATCGATTTAAAAGATCAATGCTCTAAAATGCTTTCCGAACAAAcaattat
aaaattataaagtaaatcatatcaaaataaaattcgacAACTATCAACGG
TTGAAAGTTTCAAACAAGACACCTGAGAATAGAAGGAATCCTACTAAAGG
GTGTATTAACCCCGGTATAAtaactgaaaataaaacattcaAATAATCAC
TGACATAATTTTGGCGAGTTCTCGCTCATTCATTCGACGTTCATTTTGTC
CGATGCCGAATATTTGTAAATAACGCTTAATAAAACTGTCCGGTATTTGT
CTGATGGTGTTGCATTACGGAAATTCTTGACATCGGACCATTGTTACCTG
TGAGAAAAAGGGAAGTTTTAAGACCGGAAAAACACACTGGTTCACGTCCG
GGGTTTGGACTGTTTGGTGGtgaaaaatttccatacgaaAGCGGACATTT
GCGTCCGTATCTCCCGTAAGTCAAGTGCGTCGGCTTCGCCTGGGATCCAG
CCTGCAGCGTCTTCCTTCAAGACGACTCTCATCATGACCAGGCTCTGGTG
GAATAGGTGTTGGATTATAATGCTCTTTAAATCCTATCAATTCGTTCTTC
AAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCACCAGTAGAGCATAA
ACTGCTAACATAATCCCGACATAGACCGAAAAGCGTGATCTCAGGGATAG
GCGCACGATAAACATTCAGGTAATAATCACTTTCCATATCCTCAACGTAT
TCACCATTTTCGTTAACATGAGGCACGATAATAAACTTTCGCCAAAAAAG
AATTTGGTGTGAATTAAACCAGATATCTACTGTACGAAAAAGGTCCCTAC
CATCAACTTCCGGCATTTTAAAAGAATATATCAAACATTCTTTCTCAATA
TTGAACATATAAGATGTAAACTCGTTCGTAATAAACAAATGGTTGGCCAC
AAAATTCACACAATAAGGGTACTTGATTTGCTTTTGCTTATAATGCAATT
TCGACCAAACACCAAATTGCGataatttgaatttcttcttcGGTATGAAA
TTTCGATCATCGACGAGTGAAAATTCTTCGAAAAATGTATCAATATGTAG
TATGTGATGTTTGTAAGTTAGCAACATTTGATCTCCAGTTCCTGGTTGCT
TATAGAAAAACCAAGAATTAGAGCCCAGTCTCTCACAAGCGATTTTCGTT
GAATATATCTTCCGAAATGGTACCACAGAGAAACACATAAAAAAATTACC
CTCTGAAGGAGAATCGGTAATAATGATGAGTTTCTCTCCATTACAAACAA
ACTGACAATCTAAAACTTTATTTGTTTTATAAACCTCCAGACGTGTCCTT
GTAATAAATTTAACTTTGACAGTTTGACCAGGGGTTAAAACAACTTGAAT
GAGATCTATGGTCAGATAAGAGAAAGCTGTCCGCGAATTACCAACGTATG
ACTGAATAATCGCTACGAGCTCATTCTCCAAAGACATACAAATTTTAATC
GGCGAATCAGGGCTATGTTGACATTCATCCAATATCAATGTTCCTTCATT
CAAATAACCATGCCCATTCGTAATGCGCATGACATTAATATGAACTGCAA
ATCTATTTCTCGAAAACAAAACGCAATGCGTCCGATCAGGTAGcaaaatt
ttattatcaaatgATTTCAATCCATCAATATTATCGATTTCTATGACGTC
ACTCTTTCGAAATTCGTCATCAAATTTGTAATCGTATATTCGAGTCACGT
GACCATCTGAATACTGATCCACCAATGAAATTGCAGCATTATTCTGACCA
ATCAGAGTGACATCACTACcatgaaattcatcaaaatattgagATGATGT
CGGTGTTAGAATATCTTTCAAATGCCGTGTTATGGATGAGAATCCTGTAG
CTCTAGCATCAGGGAGCAATGAGATTTCTTTGATAGGTTTCTTTGGTGTC
AGAAATAATCTGTTTTCATTGTCTGATATCATTTTATTATTGTTTAAAGT
TTATATCT
Run BLAST on NCBI

transcript from alignment at scaffold_58:257240..259311+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070778 ID=TCONS_00070778|Name=TCONS_00070778|organism=Clytia hemisphaerica|type=transcript|length=2072bp|location=Sequence derived from alignment at scaffold_58:257240..259311+ (Clytia hemisphaerica)
ATCGATTTAAAAGATCAATGCTCTAAAATGCTTTCCGAACAAAcaattat aaaattataaagtaaatcatatcaaaataaaattcgacAACTATCAACGG TTGAAAGTTTCAAACAAGACACCTGAGAATAGAAGGAATCCTACTAAAGG GTGTATTAACCCCGGTATAAtaactgaaaataaaacattcaAATAATCAC TGACATAATTTTGGCGAGTTCTCGCTCATTCATTCGACGTTCATTTTGTC CGATGCCGAATATTTGTAAATAACGCTTAATAAAACTGTCCGGTATTTGT CTGATGGTGTTGCATTACGGAAATTCTTGACATCGGACCATTGTTACCTG TGAGAAAAAGGGAAGTTTTAAGACCGGAAAAACACACTGGTTCACGTCCG GGGTTTGGACTGTTTGGTGGtgaaaaatttccatacgaaAGCGGACATTT GCGTCCGTATCTCCCGTAAGTCAAGTGCGTCGGCTTCGCCTGGGATCCAG CCTGCAGCGTCTTCCTTCAAGACGACTCTCATCATGACCAGGCTCTGGTG GAATAGGTGTTGGATTATAATGCTCTTTAAATCCTATCAATTCGTTCTTC AAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCACCAGTAGAGAATAA ACTGCTAACNCTTCAAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCA CCAGTAGAGCATAAACTGCTAACATAATCCCGACATAGACCGAAAAGCGT GATCTCAGGGATAGGCGCACGATAAACATTCAGGTAATAATCACTTTCCA TATCCTCAACGTATTCACCATTTTCGTTAACATGAGGCACGATAATAAAC TTTCGCCAAAAAAGAATTTGGTGTGAATTAAACCAGATATCTACTGTACG AAAAAGGTCCCTACCATCAACTTCCGGCATTTTAAAAGAATATATCAAAC ATTCTTTCTCAATATTGAACATATAAGATGTAAACTCGTTCGTAATAAAC AAATGGTTGGCCACAAAATTCACACAATAAGGGTACTTGATTTGCTTTTG CTTATAATGCAATTTCGACCAAACACCAAATTGCGataatttgaatttct tcttcGGTATGAAATTTCGATCATCGACGAGTGAAAATTCTTCGAAAAAT GTATCAATATGTAGTATGTGATGTTTGTAAGTTAGCAACATTTGATCTCC AGTTCCTGGTTGCTTATAGAAAAACCAAGAATTAGAGCCCAGTCTCTCAC AAGCGATTTTCGTTGAATATATCTTCCGAAATGGTACCACAGAGAAACAC ATAAAAAAATTACCCTCTGAAGGAGAATCGGTAATAATGATGAGTTTCTC TCCATTACAAACAAACTGACAATCTAAAACTTTATTTGTTTTATAAACCT CCAGACGTGTCCTTGTAATAAATTTAACTTTGACAGTTTGACCAGGGGTT AAAACAACTTGAATGAGATCTATGGTCAGATAAGAGAAAGCTGTCCGCGA ATTACCAACGTATGACTGAATAATCGCTACGAGCTCATTCTCCAAAGACA TACAAATTTTAATCGGCGAATCAGGGCTATGTTGACATTCATCCAATATC AATGTTCCTTCATTCAAATAACCATGCCCATTCGTAATGCGCATGACATT AATATGAACTGCAAATCTATTTCTCGAAAACAAAACGCAATGCGTCCGAT CAGGTAGcaaaattttattatcaaatgATTTCAATCCATCAATATTATCG ATTTCTATGACGTCACTCTTTCGAAATTCGTCATCAAATTTGTAATCGTA TATTCGAGTCACGTGACCATCTGAATACTGATCCACCAATGAAATTGCAG CATTATTCTGACCAATCAGAGTGACATCACTACcatgaaattcatcaaaa tattgagATGATGTCGGTGTTAGAATATCTTTCAAATGCCGTGTTATGGA TGAGAATCCTGTAGCTCTAGCATCAGGGAGCAATGAGATTTCTTTGATAG GTTTCTTTGGTGTCAGAAATAATCTGTTTTCATTGTCTGATATCATTTTA TTATTGTTTAAAGTTTATATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044044XLOC_044044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070778-exon-scaffold_58-1491911889:257240..257855TCONS_00070778-exon-scaffold_58-1491911889:257240..257855Clytia hemisphaericaexon
TCONS_00070778-exon-scaffold_58-1510915933:257240..257855TCONS_00070778-exon-scaffold_58-1510915933:257240..257855Clytia hemisphaericaexon
TCONS_00070778-exon-scaffold_58-1575043694:257240..257855TCONS_00070778-exon-scaffold_58-1575043694:257240..257855Clytia hemisphaericaexon
TCONS_00070778-exon-scaffold_58-1491911889:257920..259311TCONS_00070778-exon-scaffold_58-1491911889:257920..259311Clytia hemisphaericaexon
TCONS_00070778-exon-scaffold_58-1510915933:257920..259311TCONS_00070778-exon-scaffold_58-1510915933:257920..259311Clytia hemisphaericaexon
TCONS_00070778-exon-scaffold_58-1575043694:257920..259311TCONS_00070778-exon-scaffold_58-1575043694:257920..259311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:257240..259311 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.291931 0.212675 0 1.16755 0.594693 0.197148 0.432443 0.459881 0.69399 0.739254 0.386639 4.16475 5.83466 3.5005 3.44342 0.0978572 0.547225 12.1313 7.08713 1.10875 0.631947 0.214721 1.17308 1.66106 2.76847 10.1425 9.13557 5.84048 8.03985
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001496SOCS_box
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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