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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070778 ID=TCONS_00070778|Name=TCONS_00070778|organism=Clytia hemisphaerica|type=transcript|length=2008bp
ATCGATTTAAAAGATCAATGCTCTAAAATGCTTTCCGAACAAAcaattat
aaaattataaagtaaatcatatcaaaataaaattcgacAACTATCAACGG
TTGAAAGTTTCAAACAAGACACCTGAGAATAGAAGGAATCCTACTAAAGG
GTGTATTAACCCCGGTATAAtaactgaaaataaaacattcaAATAATCAC
TGACATAATTTTGGCGAGTTCTCGCTCATTCATTCGACGTTCATTTTGTC
CGATGCCGAATATTTGTAAATAACGCTTAATAAAACTGTCCGGTATTTGT
CTGATGGTGTTGCATTACGGAAATTCTTGACATCGGACCATTGTTACCTG
TGAGAAAAAGGGAAGTTTTAAGACCGGAAAAACACACTGGTTCACGTCCG
GGGTTTGGACTGTTTGGTGGtgaaaaatttccatacgaaAGCGGACATTT
GCGTCCGTATCTCCCGTAAGTCAAGTGCGTCGGCTTCGCCTGGGATCCAG
CCTGCAGCGTCTTCCTTCAAGACGACTCTCATCATGACCAGGCTCTGGTG
GAATAGGTGTTGGATTATAATGCTCTTTAAATCCTATCAATTCGTTCTTC
AAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCACCAGTAGAGCATAA
ACTGCTAACATAATCCCGACATAGACCGAAAAGCGTGATCTCAGGGATAG
GCGCACGATAAACATTCAGGTAATAATCACTTTCCATATCCTCAACGTAT
TCACCATTTTCGTTAACATGAGGCACGATAATAAACTTTCGCCAAAAAAG
AATTTGGTGTGAATTAAACCAGATATCTACTGTACGAAAAAGGTCCCTAC
CATCAACTTCCGGCATTTTAAAAGAATATATCAAACATTCTTTCTCAATA
TTGAACATATAAGATGTAAACTCGTTCGTAATAAACAAATGGTTGGCCAC
AAAATTCACACAATAAGGGTACTTGATTTGCTTTTGCTTATAATGCAATT
TCGACCAAACACCAAATTGCGataatttgaatttcttcttcGGTATGAAA
TTTCGATCATCGACGAGTGAAAATTCTTCGAAAAATGTATCAATATGTAG
TATGTGATGTTTGTAAGTTAGCAACATTTGATCTCCAGTTCCTGGTTGCT
TATAGAAAAACCAAGAATTAGAGCCCAGTCTCTCACAAGCGATTTTCGTT
GAATATATCTTCCGAAATGGTACCACAGAGAAACACATAAAAAAATTACC
CTCTGAAGGAGAATCGGTAATAATGATGAGTTTCTCTCCATTACAAACAA
ACTGACAATCTAAAACTTTATTTGTTTTATAAACCTCCAGACGTGTCCTT
GTAATAAATTTAACTTTGACAGTTTGACCAGGGGTTAAAACAACTTGAAT
GAGATCTATGGTCAGATAAGAGAAAGCTGTCCGCGAATTACCAACGTATG
ACTGAATAATCGCTACGAGCTCATTCTCCAAAGACATACAAATTTTAATC
GGCGAATCAGGGCTATGTTGACATTCATCCAATATCAATGTTCCTTCATT
CAAATAACCATGCCCATTCGTAATGCGCATGACATTAATATGAACTGCAA
ATCTATTTCTCGAAAACAAAACGCAATGCGTCCGATCAGGTAGcaaaatt
ttattatcaaatgATTTCAATCCATCAATATTATCGATTTCTATGACGTC
ACTCTTTCGAAATTCGTCATCAAATTTGTAATCGTATATTCGAGTCACGT
GACCATCTGAATACTGATCCACCAATGAAATTGCAGCATTATTCTGACCA
ATCAGAGTGACATCACTACcatgaaattcatcaaaatattgagATGATGT
CGGTGTTAGAATATCTTTCAAATGCCGTGTTATGGATGAGAATCCTGTAG
CTCTAGCATCAGGGAGCAATGAGATTTCTTTGATAGGTTTCTTTGGTGTC
AGAAATAATCTGTTTTCATTGTCTGATATCATTTTATTATTGTTTAAAGT
TTATATCT Run BLAST on NCBI transcript from alignment at scaffold_58:257240..259311+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070778 ID=TCONS_00070778|Name=TCONS_00070778|organism=Clytia hemisphaerica|type=transcript|length=2072bp|location=Sequence derived from alignment at scaffold_58:257240..259311+ (Clytia hemisphaerica)
ATCGATTTAAAAGATCAATGCTCTAAAATGCTTTCCGAACAAAcaattat
aaaattataaagtaaatcatatcaaaataaaattcgacAACTATCAACGG
TTGAAAGTTTCAAACAAGACACCTGAGAATAGAAGGAATCCTACTAAAGG
GTGTATTAACCCCGGTATAAtaactgaaaataaaacattcaAATAATCAC
TGACATAATTTTGGCGAGTTCTCGCTCATTCATTCGACGTTCATTTTGTC
CGATGCCGAATATTTGTAAATAACGCTTAATAAAACTGTCCGGTATTTGT
CTGATGGTGTTGCATTACGGAAATTCTTGACATCGGACCATTGTTACCTG
TGAGAAAAAGGGAAGTTTTAAGACCGGAAAAACACACTGGTTCACGTCCG
GGGTTTGGACTGTTTGGTGGtgaaaaatttccatacgaaAGCGGACATTT
GCGTCCGTATCTCCCGTAAGTCAAGTGCGTCGGCTTCGCCTGGGATCCAG
CCTGCAGCGTCTTCCTTCAAGACGACTCTCATCATGACCAGGCTCTGGTG
GAATAGGTGTTGGATTATAATGCTCTTTAAATCCTATCAATTCGTTCTTC
AAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCACCAGTAGAGAATAA
ACTGCTAACNCTTCAAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCA
CCAGTAGAGCATAAACTGCTAACATAATCCCGACATAGACCGAAAAGCGT
GATCTCAGGGATAGGCGCACGATAAACATTCAGGTAATAATCACTTTCCA
TATCCTCAACGTATTCACCATTTTCGTTAACATGAGGCACGATAATAAAC
TTTCGCCAAAAAAGAATTTGGTGTGAATTAAACCAGATATCTACTGTACG
AAAAAGGTCCCTACCATCAACTTCCGGCATTTTAAAAGAATATATCAAAC
ATTCTTTCTCAATATTGAACATATAAGATGTAAACTCGTTCGTAATAAAC
AAATGGTTGGCCACAAAATTCACACAATAAGGGTACTTGATTTGCTTTTG
CTTATAATGCAATTTCGACCAAACACCAAATTGCGataatttgaatttct
tcttcGGTATGAAATTTCGATCATCGACGAGTGAAAATTCTTCGAAAAAT
GTATCAATATGTAGTATGTGATGTTTGTAAGTTAGCAACATTTGATCTCC
AGTTCCTGGTTGCTTATAGAAAAACCAAGAATTAGAGCCCAGTCTCTCAC
AAGCGATTTTCGTTGAATATATCTTCCGAAATGGTACCACAGAGAAACAC
ATAAAAAAATTACCCTCTGAAGGAGAATCGGTAATAATGATGAGTTTCTC
TCCATTACAAACAAACTGACAATCTAAAACTTTATTTGTTTTATAAACCT
CCAGACGTGTCCTTGTAATAAATTTAACTTTGACAGTTTGACCAGGGGTT
AAAACAACTTGAATGAGATCTATGGTCAGATAAGAGAAAGCTGTCCGCGA
ATTACCAACGTATGACTGAATAATCGCTACGAGCTCATTCTCCAAAGACA
TACAAATTTTAATCGGCGAATCAGGGCTATGTTGACATTCATCCAATATC
AATGTTCCTTCATTCAAATAACCATGCCCATTCGTAATGCGCATGACATT
AATATGAACTGCAAATCTATTTCTCGAAAACAAAACGCAATGCGTCCGAT
CAGGTAGcaaaattttattatcaaatgATTTCAATCCATCAATATTATCG
ATTTCTATGACGTCACTCTTTCGAAATTCGTCATCAAATTTGTAATCGTA
TATTCGAGTCACGTGACCATCTGAATACTGATCCACCAATGAAATTGCAG
CATTATTCTGACCAATCAGAGTGACATCACTACcatgaaattcatcaaaa
tattgagATGATGTCGGTGTTAGAATATCTTTCAAATGCCGTGTTATGGA
TGAGAATCCTGTAGCTCTAGCATCAGGGAGCAATGAGATTTCTTTGATAG
GTTTCTTTGGTGTCAGAAATAATCTGTTTTCATTGTCTGATATCATTTTA
TTATTGTTTAAAGTTTATATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070778-exon-scaffold_58-1491911889:257240..257855 | TCONS_00070778-exon-scaffold_58-1491911889:257240..257855 | Clytia hemisphaerica | exon |
| TCONS_00070778-exon-scaffold_58-1510915933:257240..257855 | TCONS_00070778-exon-scaffold_58-1510915933:257240..257855 | Clytia hemisphaerica | exon |
| TCONS_00070778-exon-scaffold_58-1575043694:257240..257855 | TCONS_00070778-exon-scaffold_58-1575043694:257240..257855 | Clytia hemisphaerica | exon |
| TCONS_00070778-exon-scaffold_58-1491911889:257920..259311 | TCONS_00070778-exon-scaffold_58-1491911889:257920..259311 | Clytia hemisphaerica | exon |
| TCONS_00070778-exon-scaffold_58-1510915933:257920..259311 | TCONS_00070778-exon-scaffold_58-1510915933:257920..259311 | Clytia hemisphaerica | exon |
| TCONS_00070778-exon-scaffold_58-1575043694:257920..259311 | TCONS_00070778-exon-scaffold_58-1575043694:257920..259311 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:257240..259311 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001496 | SOCS_box |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0035556 | intracellular signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0035556 |
intracellular signal transduction |
Blast
The following BLAST results are available for this feature:
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