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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070774 ID=TCONS_00070774|Name=TCONS_00070774|organism=Clytia hemisphaerica|type=transcript|length=1963bp
agcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACTAAAAC
ATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTTGTCAC
GTATTATGAAATCTGTGTTTAAAAGTaaatatgaAACCTTTTTCATCAAC
GTGTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAATAGTTT
CGTATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGACTGGTT
TTGTCAAGatgttttatttcaatattcTGGCTATTTTGTTgttactttac
ttttttaaagGAGCCATCGGTCTTGATTGTTACATGTGTAGTTATTACGA
AGGATATCAATTGCCTCATCCTGGTTGTAAAGCTTTGGTGGACACGAAAA
ATTTGACCAAGAGTTGCAGTGATGATGAAGTTTGCCAGTCTATGTTCGTA
TTCAAGAGAAGTGAAGCAAGTCAAACTGAAGAGGATTTTTACAGCGGTTT
TAATTCCGTCATGCGTGAATGTCGTCCAAGGGCAAAAGTAGCATGTGGTG
ATAAAAAAGACGAGAGATGGTATAATTGTACACACCGACCTTTGACGGAT
GGAAAAGTAACTGAATGCTTTGCGTGTTGTGAGGAAGGCAGGTGTGGAGC
CAAGGTGGAGTTATTTAAAGATGAATGGTCACCTACGGATAAAGATAAAG
ATAAAGGTGCAGGTGAAGGTGAAGGACCCTCTCCTACGGTTATCGCTCTA
GCAGTTGTGATTCCTGCTGTTGTTTTGTTGGCAGTTGCCGTTGCTTGGAA
GAAGAAACTTTACCAACGTGTATCTAATTGTAATAATTAACATCTTCATG
TCAAATTGTTGCACTTTTAAATCACATCTTGAAGAATTTTCGATATGATC
AATCTCGAATTCTGAATCTTGATAGTCATAACATGCAAAATTTGTTGTTA
CCTTTGTTATACTATGGGTGTATGAAATGTTAAATATTGTGGAACATGTA
TTTTTGTTATCAATTTTTAAGTCcatttataaaatttataatatataaaa
ctCCCTCCAAAGGGAGGATCAACTGACGAAAATGCCAGTTATCTAGGATT
AAAGATTAGATTTAAAAGTATCTTGTAAATAAGGTCTACTATACTTGGCG
GTCCCTACATTTTATGGATATCTAGAGAAAGAAAGCTGGTTAAAACAATa
tttaaaattggcaaaaatgttCAAGATGATTTTGAATATAAGTCGAAAAG
TGGGATCGAGTTGAGAGTTCAACCGGTGAAAAAGTCATTGAGTTAAAAAA
GCCCGGATTTTCCTTGCGTTCCATTCCAGGAAACTTTACAACtaattttt
aagtattttttgtaagaaaattcTTTACAGGGGTATTGATTAAAGTTTTG
TACAAAGTAGATGATAAATTATATTTTGTAaagagttttatttttaaatg
acaTTCATCCCTTTTAACCCTTACCCAAGTATGGAAAAGTAACATCCAAA
CCTGTTGGTGAGCTTTTCCAATATGTAATGCGTTGTTTTATAAGAGCTTT
TTGAGGCCTTCCGgtcttcttaactttttgagttttaagcttaaaaaagt
tcttaacatgttcttattttcaccatttttagagtattttagtccatttt
gccaagaaatcggctgttttagagtctgcgatgccttaaaatgttcttaa
cttgtacttaagattttggccatgtttaatttttataaaaaaccgtgTAT
GCGTTAATTGGCAACTTATTATCACGAAAATTAATTTCACCGAAATCATT
TTTCCTCAAAATAGAGTACTTTTGTAGTTTTCTCACTACGAAATTAGTAC
ATGCCAAAATTAGGAAAATTTAGGAGCTCTTCTGCTTATCatttagcctg
gagatccatgctatgatttcttattctatatactgatggcgaaatatacc
gggtgcaccaaaN Run BLAST on NCBI transcript from alignment at scaffold_58:151237..153967+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070774 ID=TCONS_00070774|Name=TCONS_00070774|organism=Clytia hemisphaerica|type=transcript|length=2731bp|location=Sequence derived from alignment at scaffold_58:151237..153967+ (Clytia hemisphaerica)
agcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACTAAAAC
ATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTTGTCAC
GTATTATGAAATCTGTGTTTAAAAGTGTAAGTAAAATGTATTCAAAATGT
GTATAAGCTTGCATTGTGAAAGCTGTAAGTGACAGcactttttcaagttt
ttgttgtTATTGCCTTTTTAGTGTCTGAAAGTTTCCATTATATTCCTGTT
TGATTTTACTAAAAGTTTTTCGTCTTTTAAAAATTAGGATACTTTTTGAA
CAATCatttaattcatttttcaatacaacaaatttttttactGACGATGG
TACTCTGTTGAGGCCGAAacgtttaaaaataaatttcaaaaaatgaacca
aaagcaGCTTCTGTTTTTTACTGAAGATGTGTGGAAGGAGtgatttattt
aattatttaaaaattattttacaaaatgattACATTCAAATATTAGGGCT
AGACCCATCAAATCGAAAAGTATTAGGTCTTGAATTAGTGATAACAGTGA
ATTGATTGATATACACTCTTAACATTAACCTCTCTCGTTTTCTAATTTGA
CTGGTAATAATATaacattttgtttagaaatatgaAACCTTTTTCATCAA
CGTGTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAATAGTT
TCGTATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGACTGGT
TTTGTCAAGatgttttatttcaatattcTGGCTATTTTGTTgttacttta
cttttttaaagGTAAGTAGGACTTTAACTATAATTATATTTACTACTTAT
TTCGTCCCCTATCTCACTGATCTCGCATCAATTTTTATATGAACCTTTTG
TCACAAGAAAAGCTAAAGTAAAGAAAAGTTTGGATTAAAAAATCCCACtg
aaaaagttttaattgaaacttacaatgtatagcaatgtgccctcccggtt
attaccataatggctttatggcaactcctgaacttgggcacatgATGTAC
GGTTTAATTGAAACTTATTGATTTTTAGGAGCCATCGGTCTTGATTGTTA
CATGTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTGTAAAG
CTTTGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATGAAGTT
TGCCAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACTGAAGA
GGATTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCCAAGGG
CAAAAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATTGTACA
CACCGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGTTGTGA
GGAAGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATGGTCAC
CTACGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGACCCTCT
CCTACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTGTTGGC
AGTTGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAATTGTA
ATAATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACATCTTGA
AGAATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTCATAAC
ATGCAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAATGTTA
AATATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcatttataa
aatttataatatataaaactCCCTCCAAAGGGAGGATCAACTGACGAAAA
TGCCAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTAAATAA
GGTCTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAGAAAGA
AAGCTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGATGATTT
TGAATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGTGAAAA
AGTCATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCCAGGAA
ACTTTACAACtaatttttaagtattttttgtaagaaaattcTTTACAGGG
GTATTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTTGTAaa
gagttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCAAGTAT
GGAAAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTAATGCG
TTGTTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaactttttgag
ttttaagcttaaaaaagttcttaacatgttcttattttcaccatttttag
agtattttagtccattttgccaagaaatcggctgttttagagtctgcgat
gccttaaaatgttcttaacttgtacttaagattttggccatgtttaattt
ttataaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGAAAATT
AATTTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAGTTTTC
TCACTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGCTCTTC
TGCTTATCatttagcctggagatccatgctatgatttcttattctatata
ctgatggcgaaatataccgggtgcaccaaaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070774-exon-scaffold_58-1491911889:151237..151362 | TCONS_00070774-exon-scaffold_58-1491911889:151237..151362 | Clytia hemisphaerica | exon |
| TCONS_00070774-exon-scaffold_58-1510915933:151237..151362 | TCONS_00070774-exon-scaffold_58-1510915933:151237..151362 | Clytia hemisphaerica | exon |
| TCONS_00070774-exon-scaffold_58-1575043694:151237..151362 | TCONS_00070774-exon-scaffold_58-1575043694:151237..151362 | Clytia hemisphaerica | exon |
| TCONS_00070774-exon-scaffold_58-1491911889:151864..152047 | TCONS_00070774-exon-scaffold_58-1491911889:151864..152047 | Clytia hemisphaerica | exon |
| TCONS_00070774-exon-scaffold_58-1510915933:151864..152047 | TCONS_00070774-exon-scaffold_58-1510915933:151864..152047 | Clytia hemisphaerica | exon |
| TCONS_00070774-exon-scaffold_58-1575043694:151864..152047 | TCONS_00070774-exon-scaffold_58-1575043694:151864..152047 | Clytia hemisphaerica | exon |
| TCONS_00070774-exon-scaffold_58-1491911889:152315..153967 | TCONS_00070774-exon-scaffold_58-1491911889:152315..153967 | Clytia hemisphaerica | exon |
| TCONS_00070774-exon-scaffold_58-1510915933:152315..153967 | TCONS_00070774-exon-scaffold_58-1510915933:152315..153967 | Clytia hemisphaerica | exon |
| TCONS_00070774-exon-scaffold_58-1575043694:152315..153967 | TCONS_00070774-exon-scaffold_58-1575043694:152315..153967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:151237..153967 + |
Blast
The following BLAST results are available for this feature:
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