TCONS_00070772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070772
Unique NameTCONS_00070772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070772 ID=TCONS_00070772|Name=TCONS_00070772|organism=Clytia hemisphaerica|type=transcript|length=1784bp
ttttcagcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACT
AAAACATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTT
GTCACGTATTATGAAATCTGTGTTTAAAAGTGAGCCATCGGTCTTGATTG
TTACATGTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTGTA
AAGCTTTGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATGAA
GTTTGCCAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACTGA
AGAGGATTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCCAA
GGGCAAAAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATTGT
ACACACCGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGTTG
TGAGGAAGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATGGT
CACCTACGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGACCC
TCTCCTACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTGTT
GGCAGTTGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAATT
GTAATAATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACATCT
TGAAGAATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTCAT
AACATGCAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAATG
TTAAATATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcattta
taaaatttataatatataaaactCCCTCCAAAGGGAGGATCAACTGACGA
AAATGCCAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTAAA
TAAGGTCTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAGAA
AGAAAGCTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGATGA
TTTTGAATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGTGA
AAAAGTCATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCCAG
GAAACTTTACAACtaatttttaagtattttttgtaagaaaattcTTTACA
GGGGTATTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTTGT
AaagagttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCAAG
TATGGAAAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTAAT
GCGTTGTTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaacttttt
gagttttaagcttaaaaaagttcttaacatgttcttattttcaccatttt
tagagtattttagtccattttgccaagaaatcggctgttttagagtctgc
gatgccttaaaatgttcttaacttgtacttaagattttggccatgtttaa
tttttataaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGAAA
ATTAATTTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAGTT
TTCTCACTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGCTC
TTCTGCTTATCatttagcctggagatccatgctatgatttcttattctat
atactgatggcgaaatataccgggtgcaccaaaN
Run BLAST on NCBI

transcript from alignment at scaffold_58:151232..153967+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070772 ID=TCONS_00070772|Name=TCONS_00070772|organism=Clytia hemisphaerica|type=transcript|length=2736bp|location=Sequence derived from alignment at scaffold_58:151232..153967+ (Clytia hemisphaerica)
ttttcagcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACT AAAACATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTT GTCACGTATTATGAAATCTGTGTTTAAAAGTGTAAGTAAAATGTATTCAA AATGTGTATAAGCTTGCATTGTGAAAGCTGTAAGTGACAGcactttttca agtttttgttgtTATTGCCTTTTTAGTGTCTGAAAGTTTCCATTATATTC CTGTTTGATTTTACTAAAAGTTTTTCGTCTTTTAAAAATTAGGATACTTT TTGAACAATCatttaattcatttttcaatacaacaaatttttttactGAC GATGGTACTCTGTTGAGGCCGAAacgtttaaaaataaatttcaaaaaatg aaccaaaagcaGCTTCTGTTTTTTACTGAAGATGTGTGGAAGGAGtgatt tatttaattatttaaaaattattttacaaaatgattACATTCAAATATTA GGGCTAGACCCATCAAATCGAAAAGTATTAGGTCTTGAATTAGTGATAAC AGTGAATTGATTGATATACACTCTTAACATTAACCTCTCTCGTTTTCTAA TTTGACTGGTAATAATATaacattttgtttagaaatatgaAACCTTTTTC ATCAACGTGTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAA TAGTTTCGTATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGA CTGGTTTTGTCAAGatgttttatttcaatattcTGGCTATTTTGTTgtta ctttacttttttaaagGTAAGTAGGACTTTAACTATAATTATATTTACTA CTTATTTCGTCCCCTATCTCACTGATCTCGCATCAATTTTTATATGAACC TTTTGTCACAAGAAAAGCTAAAGTAAAGAAAAGTTTGGATTAAAAAATCC CACtgaaaaagttttaattgaaacttacaatgtatagcaatgtgccctcc cggttattaccataatggctttatggcaactcctgaacttgggcacatgA TGTACGGTTTAATTGAAACTTATTGATTTTTAGGAGCCATCGGTCTTGAT TGTTACATGTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTG TAAAGCTTTGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATG AAGTTTGCCAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACT GAAGAGGATTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCC AAGGGCAAAAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATT GTACACACCGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGT TGTGAGGAAGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATG GTCACCTACGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGAC CCTCTCCTACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTG TTGGCAGTTGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAA TTGTAATAATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACAT CTTGAAGAATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTC ATAACATGCAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAA TGTTAAATATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcatt tataaaatttataatatataaaactCCCTCCAAAGGGAGGATCAACTGAC GAAAATGCCAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTA AATAAGGTCTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAG AAAGAAAGCTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGAT GATTTTGAATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGT GAAAAAGTCATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCC AGGAAACTTTACAACtaatttttaagtattttttgtaagaaaattcTTTA CAGGGGTATTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTT GTAaagagttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCA AGTATGGAAAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTA ATGCGTTGTTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaacttt ttgagttttaagcttaaaaaagttcttaacatgttcttattttcaccatt tttagagtattttagtccattttgccaagaaatcggctgttttagagtct gcgatgccttaaaatgttcttaacttgtacttaagattttggccatgttt aatttttataaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGA AAATTAATTTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAG TTTTCTCACTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGC TCTTCTGCTTATCatttagcctggagatccatgctatgatttcttattct atatactgatggcgaaatataccgggtgcaccaaaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044041XLOC_044041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070772-exon-scaffold_58-1491911889:151232..151362TCONS_00070772-exon-scaffold_58-1491911889:151232..151362Clytia hemisphaericaexon
TCONS_00070772-exon-scaffold_58-1510915933:151232..151362TCONS_00070772-exon-scaffold_58-1510915933:151232..151362Clytia hemisphaericaexon
TCONS_00070772-exon-scaffold_58-1575043694:151232..151362TCONS_00070772-exon-scaffold_58-1575043694:151232..151362Clytia hemisphaericaexon
TCONS_00070772-exon-scaffold_58-1491911889:152315..153967TCONS_00070772-exon-scaffold_58-1491911889:152315..153967Clytia hemisphaericaexon
TCONS_00070772-exon-scaffold_58-1510915933:152315..153967TCONS_00070772-exon-scaffold_58-1510915933:152315..153967Clytia hemisphaericaexon
TCONS_00070772-exon-scaffold_58-1575043694:152315..153967TCONS_00070772-exon-scaffold_58-1575043694:152315..153967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:151232..153967 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40147 0.754847 1.41581 1.32689 6.17202 11.7676 4.36611 9.6582 1.66714 7.24542 0.00100216 2.45654 2.57808 5.74666 4.03639 3.27133 4.83202 0.399024 7.97814 9.47109 2.23168e-05 3.93827e-08 9.61826e-08 2.45821 12.7674 15.5686 2.29549 2.51503e-06 2.41009 1.36725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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