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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070772 ID=TCONS_00070772|Name=TCONS_00070772|organism=Clytia hemisphaerica|type=transcript|length=1784bp
ttttcagcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACT
AAAACATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTT
GTCACGTATTATGAAATCTGTGTTTAAAAGTGAGCCATCGGTCTTGATTG
TTACATGTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTGTA
AAGCTTTGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATGAA
GTTTGCCAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACTGA
AGAGGATTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCCAA
GGGCAAAAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATTGT
ACACACCGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGTTG
TGAGGAAGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATGGT
CACCTACGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGACCC
TCTCCTACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTGTT
GGCAGTTGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAATT
GTAATAATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACATCT
TGAAGAATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTCAT
AACATGCAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAATG
TTAAATATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcattta
taaaatttataatatataaaactCCCTCCAAAGGGAGGATCAACTGACGA
AAATGCCAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTAAA
TAAGGTCTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAGAA
AGAAAGCTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGATGA
TTTTGAATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGTGA
AAAAGTCATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCCAG
GAAACTTTACAACtaatttttaagtattttttgtaagaaaattcTTTACA
GGGGTATTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTTGT
AaagagttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCAAG
TATGGAAAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTAAT
GCGTTGTTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaacttttt
gagttttaagcttaaaaaagttcttaacatgttcttattttcaccatttt
tagagtattttagtccattttgccaagaaatcggctgttttagagtctgc
gatgccttaaaatgttcttaacttgtacttaagattttggccatgtttaa
tttttataaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGAAA
ATTAATTTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAGTT
TTCTCACTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGCTC
TTCTGCTTATCatttagcctggagatccatgctatgatttcttattctat
atactgatggcgaaatataccgggtgcaccaaaN Run BLAST on NCBI transcript from alignment at scaffold_58:151232..153967+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070772 ID=TCONS_00070772|Name=TCONS_00070772|organism=Clytia hemisphaerica|type=transcript|length=2736bp|location=Sequence derived from alignment at scaffold_58:151232..153967+ (Clytia hemisphaerica)
ttttcagcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACT
AAAACATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTT
GTCACGTATTATGAAATCTGTGTTTAAAAGTGTAAGTAAAATGTATTCAA
AATGTGTATAAGCTTGCATTGTGAAAGCTGTAAGTGACAGcactttttca
agtttttgttgtTATTGCCTTTTTAGTGTCTGAAAGTTTCCATTATATTC
CTGTTTGATTTTACTAAAAGTTTTTCGTCTTTTAAAAATTAGGATACTTT
TTGAACAATCatttaattcatttttcaatacaacaaatttttttactGAC
GATGGTACTCTGTTGAGGCCGAAacgtttaaaaataaatttcaaaaaatg
aaccaaaagcaGCTTCTGTTTTTTACTGAAGATGTGTGGAAGGAGtgatt
tatttaattatttaaaaattattttacaaaatgattACATTCAAATATTA
GGGCTAGACCCATCAAATCGAAAAGTATTAGGTCTTGAATTAGTGATAAC
AGTGAATTGATTGATATACACTCTTAACATTAACCTCTCTCGTTTTCTAA
TTTGACTGGTAATAATATaacattttgtttagaaatatgaAACCTTTTTC
ATCAACGTGTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAA
TAGTTTCGTATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGA
CTGGTTTTGTCAAGatgttttatttcaatattcTGGCTATTTTGTTgtta
ctttacttttttaaagGTAAGTAGGACTTTAACTATAATTATATTTACTA
CTTATTTCGTCCCCTATCTCACTGATCTCGCATCAATTTTTATATGAACC
TTTTGTCACAAGAAAAGCTAAAGTAAAGAAAAGTTTGGATTAAAAAATCC
CACtgaaaaagttttaattgaaacttacaatgtatagcaatgtgccctcc
cggttattaccataatggctttatggcaactcctgaacttgggcacatgA
TGTACGGTTTAATTGAAACTTATTGATTTTTAGGAGCCATCGGTCTTGAT
TGTTACATGTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTG
TAAAGCTTTGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATG
AAGTTTGCCAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACT
GAAGAGGATTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCC
AAGGGCAAAAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATT
GTACACACCGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGT
TGTGAGGAAGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATG
GTCACCTACGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGAC
CCTCTCCTACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTG
TTGGCAGTTGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAA
TTGTAATAATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACAT
CTTGAAGAATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTC
ATAACATGCAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAA
TGTTAAATATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcatt
tataaaatttataatatataaaactCCCTCCAAAGGGAGGATCAACTGAC
GAAAATGCCAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTA
AATAAGGTCTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAG
AAAGAAAGCTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGAT
GATTTTGAATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGT
GAAAAAGTCATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCC
AGGAAACTTTACAACtaatttttaagtattttttgtaagaaaattcTTTA
CAGGGGTATTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTT
GTAaagagttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCA
AGTATGGAAAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTA
ATGCGTTGTTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaacttt
ttgagttttaagcttaaaaaagttcttaacatgttcttattttcaccatt
tttagagtattttagtccattttgccaagaaatcggctgttttagagtct
gcgatgccttaaaatgttcttaacttgtacttaagattttggccatgttt
aatttttataaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGA
AAATTAATTTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAG
TTTTCTCACTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGC
TCTTCTGCTTATCatttagcctggagatccatgctatgatttcttattct
atatactgatggcgaaatataccgggtgcaccaaaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070772-exon-scaffold_58-1491911889:151232..151362 | TCONS_00070772-exon-scaffold_58-1491911889:151232..151362 | Clytia hemisphaerica | exon |
| TCONS_00070772-exon-scaffold_58-1510915933:151232..151362 | TCONS_00070772-exon-scaffold_58-1510915933:151232..151362 | Clytia hemisphaerica | exon |
| TCONS_00070772-exon-scaffold_58-1575043694:151232..151362 | TCONS_00070772-exon-scaffold_58-1575043694:151232..151362 | Clytia hemisphaerica | exon |
| TCONS_00070772-exon-scaffold_58-1491911889:152315..153967 | TCONS_00070772-exon-scaffold_58-1491911889:152315..153967 | Clytia hemisphaerica | exon |
| TCONS_00070772-exon-scaffold_58-1510915933:152315..153967 | TCONS_00070772-exon-scaffold_58-1510915933:152315..153967 | Clytia hemisphaerica | exon |
| TCONS_00070772-exon-scaffold_58-1575043694:152315..153967 | TCONS_00070772-exon-scaffold_58-1575043694:152315..153967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:151232..153967 + |
Blast
The following BLAST results are available for this feature:
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