Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070729 ID=TCONS_00070729|Name=TCONS_00070729|organism=Clytia hemisphaerica|type=transcript|length=1551bpRun BLAST on NCBI protein sequence of TCONS_00070729-protein >TCONS_00070729-protein ID=TCONS_00070729-protein|Name=TCONS_00070729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp MEMEVSIHNTKTNILKENQIGDGQSYYQMKFLFEIRVGNNVIGSCDIYIDRun BLAST on NCBI transcript from alignment at scaffold_57:114381..115931 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070729 ID=TCONS_00070729|Name=TCONS_00070729|organism=Clytia hemisphaerica|type=transcript|length=1551bp|location=Sequence derived from alignment at scaffold_57:114381..115931 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:114381..115931 >TCONS_00070729 ID=TCONS_00070729|Name=TCONS_00070729|organism=Clytia hemisphaerica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_57:114381..115931 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070729 vs. Swiss-Prot (Human)
Match: ZN850 (Zinc finger protein 850 OS=Homo sapiens GN=ZNF850 PE=3 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 4.368e-32 Identity = 70/194 (36.08%), Postives = 112/194 (57.73%), Query Frame = -1 Query: 253 SDHQNYEVGVKIEKLVPGSHALPI----VNDSPLSSLSIENSKKTLEKANENNLVENQTNKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 819 +D + +E ++ P +H + D P S + N++ + + C++CGK ++ TL H IH ++C+ECGK+FA+ L RH++IH G K + C+ECGKSFT L++HQ+ HTG KP++CKECGK F +++ + GH +A+H G +P++C ECGKSF+ S++I H Sbjct: 248 TDERPHECQESVKAFRPSAHLIQHWRIHTGDKPYECKECGKSFTSGSTLNQHQQIHTGEKPYHCKQCGKSFTVGSTLIRH-QQIHTGEKPYDCKECGKSFASGSALIRHQRIHTGEKPYDCKECGKSFTFHSALIRHQRIHTGEKPYDCKECGKSFTFRSGLIGH-QAIHTGEKPYDCKECGKSFTAGSTLIQH 439 HSP 2 Score: 121.324 bits (303), Expect = 7.880e-29 Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = -1 Query: 253 ENNLVENQTNKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 681 ++ + + C+ECGK +++ L H IH + C+ECGK+F RH++IH G K + C+ECGKSF LL+HQ+ HTG KP+ CKECGK F +++ + GH +AVH G +P++C ECGKSF+ +S++I H Sbjct: 438 QHQRIHTGEKPYDCKECGKSFASGSALLQH-QRIHTGEKPYCCKECGKSFTFRSTRNRHQRIHTGEKPYNCKECGKSFASGSALLQHQRIHTGEKPYHCKECGKSFTFRSGLIGH-QAVHTGEKPYDCKECGKSFTSRSALIQH 579 HSP 3 Score: 119.398 bits (298), Expect = 3.503e-28 Identity = 57/133 (42.86%), Postives = 88/133 (66.17%), Query Frame = -1 Query: 253 FQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 648 + C+ECGK +++ TL I +H ++C+ECGK+F L +H +H G K + C+ECGKSFT R L++HQ+ HTG KP+ CKECGK FA+++++ H + +H G +P++C ECGK+F +S + H Sbjct: 785 YDCKECGKSFTSHSTL-IQHQPLHTGEKPYHCKECGKSFTLRSALIQHRPVHTGEKRYSCKECGKSFTSRSTLIEHQRIHTGEKPYHCKECGKSFAFRSAIIQH-RRIHTGEKPYDCKECGKAFRRRSKLTQH 915 HSP 4 Score: 114.005 bits (284), Expect = 1.896e-26 Identity = 62/148 (41.89%), Postives = 95/148 (64.19%), Query Frame = -1 Query: 253 NNLVENQTN-----KFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 678 + L+++Q N + +ECGK +++ TL I IH ++C+ECGK+F + L +H++IH G KL+ C+ECGKSFT L++HQ HTG KP+ CKECGK F ++++ H + VH G + + C ECGKSF+ +S++I H Sbjct: 714 SGLIQHQQNHTDEKPYDGKECGKSFTSHSTL-IQHQQIHTGEKPYDCKECGKSFTSHSTLIQHQQIHTGEKLYDCKECGKSFTSHSTLIQHQPLHTGEKPYHCKECGKSFTLRSALIQH-RPVHTGEKRYSCKECGKSFTSRSTLIEH 859 HSP 5 Score: 108.612 bits (270), Expect = 9.874e-25 Identity = 56/145 (38.62%), Postives = 86/145 (59.31%), Query Frame = -1 Query: 253 NENNLVENQTNKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 684 N + + + C+ECGK +++ L H IH ++C+ECGK+F L H+ +H G K + C+ECGKSFT R L++HQ+ HTG KP+ CKECGK F +++ H + +H G +P++C ECGK+F + + H Sbjct: 493 NRHQRIHTGEKPYNCKECGKSFASGSALLQH-QRIHTGEKPYHCKECGKSFTFRSGLIGHQAVHTGEKPYDCKECGKSFTSRSALIQHQRIHTGEKPYHCKECGKSFTVGSTLLQH-QQIHTGEKPYDCKECGKAFRLRLRLTQH 635 HSP 6 Score: 107.842 bits (268), Expect = 1.858e-24 Identity = 58/166 (34.94%), Postives = 92/166 (55.42%), Query Frame = -1 Query: 253 VNDSPLSSLSIENSKKTLEKANENNLVENQTNKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 747 + P + + K ++ + ++C ECGK + L H ++IH + C+ CGK+F +L H++IH G + + C+ECGKSFT L++HQ+THTG KP++CKECGK F + + H K +H G + ++CPECGK+F + S + H Sbjct: 892 TGEKPYDCKECGKAFRRRSKLTQHQRIHTGEKPYRCHECGKAFVRFSGLTKH-HSIHTGEKPYECKTCGKSFRQRTHLTLHQRIHTGDRPYECKECGKSFTCGSELIRHQRTHTGEKPYDCKECGKAFRCPSQLSQH-KRIHTGEKTYQCPECGKAFFYASGLSRH 1055 HSP 7 Score: 107.071 bits (266), Expect = 3.221e-24 Identity = 58/147 (39.46%), Postives = 88/147 (59.86%), Query Frame = -1 Query: 253 KANENNLVENQTNKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 690 + ++ + +QCQECGK + + L H + IH + C +CGK F YL +H +IH G K + C+ECGKSFT L++HQ+ HT KP++ KECGK F +++ H + +H G +P++C ECGKSF+ S++I H Sbjct: 631 RLTQHQQIHTGEKPYQCQECGKAFVSVSGLTQH-HRIHTGEKPYECPDCGKAFRQRTYLNQHRRIHTGEKPYECKECGKSFTFCSGLIQHQQNHTDEKPYDGKECGKSFTSHSTLIQH-QQIHTGEKPYDCKECGKSFTSHSTLIQH 775 HSP 8 Score: 106.686 bits (265), Expect = 3.788e-24 Identity = 61/151 (40.40%), Postives = 91/151 (60.26%), Query Frame = -1 Query: 253 ANENNLVENQT-----NKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 687 A+ + L+ +Q + C+ECGK ++ L H IH ++C+ECGK+F L H+ IH G K + C+ECGKSFT L++HQ+ HTG KP++CKECGK FA +++ H + +H G +P+ C ECGKSF+ +S+ H Sbjct: 347 ASGSALIRHQRIHTGEKPYDCKECGKSFTFHSALIRH-QRIHTGEKPYDCKECGKSFTFRSGLIGHQAIHTGEKPYDCKECGKSFTAGSTLIQHQRIHTGEKPYDCKECGKSFASGSALLQHQR-IHTGEKPYCCKECGKSFTFRSTRNRH 495 HSP 9 Score: 106.686 bits (265), Expect = 4.416e-24 Identity = 55/143 (38.46%), Postives = 87/143 (60.84%), Query Frame = -1 Query: 253 NNLVENQTNKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 678 + V + C+ECGK +++ L I IH ++C+ECGK+F L +H++IH G K + C+ECGK+F R L +HQ+ HTG KP++C+ECGK F + + H + +H G +P+ECP+CGK+F ++ + H Sbjct: 551 HQAVHTGEKPYDCKECGKSFTSRSAL-IQHQRIHTGEKPYHCKECGKSFTVGSTLLQHQQIHTGEKPYDCKECGKAFRLRLRLTQHQQIHTGEKPYQCQECGKAFVSVSGLTQHHR-IHTGEKPYECPDCGKAFRQRTYLNQH 691 HSP 10 Score: 106.686 bits (265), Expect = 4.456e-24 Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = -1 Query: 253 ENNLVENQTNKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 681 ++ V ++ C+ECGK +++ TL I IH ++C+ECGK+FA + +H +IH G K + C+ECGK+F +R L +HQ+ HTG KP+ C ECGK F + + H ++H G +P+EC CGKSF ++ + H Sbjct: 830 QHRPVHTGEKRYSCKECGKSFTSRSTL-IEHQRIHTGEKPYHCKECGKSFAFRSAIIQHRRIHTGEKPYDCKECGKAFRRRSKLTQHQRIHTGEKPYRCHECGKAFVRFSGLTKH-HSIHTGEKPYECKTCGKSFRQRTHLTLH 971 HSP 11 Score: 105.916 bits (263), Expect = 7.718e-24 Identity = 64/174 (36.78%), Postives = 95/174 (54.60%), Query Frame = -1 Query: 253 IVNDSPLSSLSIENSKKTLEKA--NENNLVENQT-----NKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 750 ++ P+ + S K K+ + + L+E+Q + C+ECGK ++ + I IH ++C+ECGK F L +H++IH G K + C ECGK+F + L KH HTG KP+ECK CGK F + + H + +H G RP+EC ECGKSF+ S +I H Sbjct: 828 LIQHRPVHTGEKRYSCKECGKSFTSRSTLIEHQRIHTGEKPYHCKECGKSFAFRSAI-IQHRRIHTGEKPYDCKECGKAFRRRSKLTQHQRIHTGEKPYRCHECGKAFVRFSGLTKHHSIHTGEKPYECKTCGKSFRQRTHLTLHQR-IHTGDRPYECKECGKSFTCGSELIRH 999 HSP 12 Score: 102.449 bits (254), Expect = 1.161e-22 Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = -1 Query: 253 ENNLVENQTNKFQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 681 ++ + + C+ECGK + L H IH + C ECGK F L +H IH G K + C+ CGKSF QR L HQ+ HTG +P+ECKECGK F + + H + H G +P++C ECGK+F S + H Sbjct: 886 QHRRIHTGEKPYDCKECGKAFRRRSKLTQH-QRIHTGEKPYRCHECGKAFVRFSGLTKHHSIHTGEKPYECKTCGKSFRQRTHLTLHQRIHTGDRPYECKECGKSFTCGSELIRHQR-THTGEKPYDCKECGKAFRCPSQLSQH 1027 HSP 13 Score: 102.064 bits (253), Expect = 1.427e-22 Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = -1 Query: 253 FQCQECGKFYSTEKTLKIHINTIHEENGHFNCEECGKTFATLIYLKRHEKIH-GVKLHICEECGKSFTQRCILLKHQKTHTGVKPFECKECGKRFAYKASVFGHIKAVHKGLRPFECPECGKSFSHKSSMIHH 648 + C+ECGK + L H IH + C+ECGK F ++ L +H +IH G K + C +CGK+F QR L +H++ HTG KP+ECKECGK F + + + H + H +P++ ECGKSF+ S++I H Sbjct: 617 YDCKECGKAFRLRLRLTQH-QQIHTGEKPYQCQECGKAFVSVSGLTQHHRIHTGEKPYECPDCGKAFRQRTYLNQHRRIHTGEKPYECKECGKSFTFCSGLIQH-QQNHTDEKPYDGKECGKSFTSHSTLIQH 747 The following BLAST results are available for this feature:
BLAST of TCONS_00070729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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