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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070673 ID=TCONS_00070673|Name=TCONS_00070673|organism=Clytia hemisphaerica|type=transcript|length=1218bpRun BLAST on NCBI protein sequence of TCONS_00070673-protein >TCONS_00070673-protein ID=TCONS_00070673-protein|Name=TCONS_00070673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp MVDRLANTEENNRRMKHVEDCFGTSGQSLVSVGRVLVGEGVLTKLCRKKPRun BLAST on NCBI transcript from alignment at scaffold_57:365860..398115- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070673 ID=TCONS_00070673|Name=TCONS_00070673|organism=Clytia hemisphaerica|type=transcript|length=32256bp|location=Sequence derived from alignment at scaffold_57:365860..398115- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:365860..398115- >TCONS_00070673 ID=TCONS_00070673|Name=TCONS_00070673|organism=Clytia hemisphaerica|type=CDS|length=8760bp|location=Sequence derived from alignment at scaffold_57:365860..398115- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070673 vs. Swiss-Prot (Human)
Match: PKHF2 (Pleckstrin homology domain-containing family F member 2 OS=Homo sapiens GN=PLEKHF2 PE=1 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 3.087e-109 Identity = 149/221 (67.42%), Postives = 176/221 (79.64%), Query Frame = 3
Query: 123 MVDRLANTEENNRRMKHVEDCFGTSGQSLVSVGRVLVGEGVLTKLCRKKPKPRQFFLFNDILVYGTILISKKKYANQHIIPLQEVKIITLEDDGNFKNGWQIISPSKSFAVYAATPTEKAEWMAHINKCINDLLKKTGKKPSGEEAAVWVPDQSANVCMLCQKTKFTTIVRKHHCRRCGSVVCGNCSSKRFLIPHISSKPVRVCDQCYDKMSSGAVKPDEP 785
MVDRLAN+E N RR+ VE+CFG +GQ L GRVL+GEGVLTKLCRKKPK RQFFLFNDILVYG I+I KKKY QHIIPL+ V I +++D+G+ +NGW I +P+KSFAVYAAT TEK+EWM HINKC+ DLL K+GK PS E AAVWVPD A VCM CQK KFT + R+HHCR+CG VVCG CS KRFL+P SSKPVR+CD CYD +S+G + +P
Sbjct: 1 MVDRLANSEANTRRISIVENCFGAAGQPLTIPGRVLIGEGVLTKLCRKKPKARQFFLFNDILVYGNIVIQKKKYNKQHIIPLENVTIDSIKDEGDLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSAGDMATCQP 221 The following BLAST results are available for this feature:
BLAST of TCONS_00070673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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