TCONS_00070655 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070655
Unique NameTCONS_00070655
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070655 ID=TCONS_00070655|Name=TCONS_00070655|organism=Clytia hemisphaerica|type=transcript|length=1666bp
gtctagaaTAGGCTACAAAGCAGACAATGAAAAAGAACCCCCGTCAAAAG
GTTGGGATCGGACAAGACACAAAGGAAGAACAAGTTATACAATAGTATAT
TGTTAACTTACAATACCTAGACAATAATATACTAATCATTGAGCacctaa
aaactaagaataaaatttgaaataaacatACATTAATAAATCATAGTAAG
ACAAAATGGAAAGAATAAACACGACGGGTCTAATaataaaaagttctaaa
atgTGTTAATAAAGTCATTACCATTCATTTCGTAGAGGGTAGTGTTGATA
AATATATCTTGTAAAACATTACCACAAACATGACACTTTACAGTGGACTT
CTTTAATGTAGTACGTAGCACGTTATTACAGGGTGTGTATGGCGGCCATT
AGCACTACATGAAGAGCTATTTGTATTGAAAGTTCTGAAACAACAACTTA
TTTACAAATTACTTTTACCTGGGCTTTAATATTCATTATTCATCCAATAA
TTTTATCCCAATTATTATCGATTGTCGAAtattcttcatcttcatctgaC
TCTTCATCAGATCCATCCATCCATTCCTCATCCTCGTCTTGGCCCTGAAC
CACAACTTCCTCCTGATACTCTGGTTGCTCTTCAATCTCTTCAGGCTCCT
CATGACTCTTCTGGTGTTTGTCGAATTCTCTTTTCCTGGCGAACTGAGCA
CCACATTCTGAGCACTGATACGGGATAATGCCTTGGTGAACTCCTTCAAT
GTGTCGCTTAAGATCATTTTTCTGAGAATAACTCTTACCACACTCATGAC
ACTTGAACGGCTCTAACCCTCTATGATTCCTTTGAACGTGTGCTAAAAGA
CGGTGCCGATGTGCAAATGATCTGTCACATTCGTCACATTTATGAGGACG
TAAATCTCTAGGGGCAGTTTTCTTGTACACTGTTTTTGGGACTGGTGGTT
TCTTTGGTGTACCTTCATGCTTCTTGACTTTGACATGTTTATAAAGCTCC
CATTTTCTACCAAACCGTTCATCACACCAATCACATTCATAAGGTTTAGC
ACCTTTGTGAACGACATCAATGTGTCTGGTAAGGTCTCCTTTTGCTGAAT
AAGCTCTACCACATTCATGACATTGAAATGGAATCAGATCTTTATGGACG
ATATCTATATGAGCTTGAAGTCGATTCTTCGCCCCAAAGGTCTTTCCACA
CTCTGTGCATTTAAACTTTCTTTCTTCATCATGAATTTGTTTGTGGCTAT
TAAGACCAGCTCTCCGTGAAAATGACTTACCACAAACATTACATTGAAAT
GGCTTAAGACCAAGATGTACAGCATTCTGATGCATTGTTAGCCTGTAATT
ATTGATGAAGACTTTACCACAAACTTCACACTCTTTTCCACCAATCCCAT
TAACTTGTGAAACCTTGGTCCTTTCTTCGAAGGGCTTAAATAGGAAATCA
TTTTGTTGTGTGTCTCCAAGTTGAACTCGGTTGAGAAGATTACCAATAGC
AAGTTGACAAGTACCCATTTTCTTGCCATCCTTGattatttcaaatgata
atTTGAATGGTATAATTGACGATTCAACCCCTGAATCAACATCTTTGATA
ATCAAGTTTTCAAGTTGGAAATTcatatttgattatttctttattttgat
tttattattatctctg
Run BLAST on NCBI

transcript from alignment at scaffold_57:63236..64901-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070655 ID=TCONS_00070655|Name=TCONS_00070655|organism=Clytia hemisphaerica|type=transcript|length=1666bp|location=Sequence derived from alignment at scaffold_57:63236..64901- (Clytia hemisphaerica)
GTCTAGAATAGGCTACAAAGCAGACAATGAAAAAGAACCCCCGTCAAAAG
GTTGGGATCGGACAAGACACAAAGGAAGAACAAGTTATACAATAGTATAT
TGTTAACTTACAATACCTAGACAATAATATACTAATCATTGAGCACCTAA
AAACTAAGAATAAAATTTGAAATAAACATACATTAATAAATCATAGTAAG
ACAAAATGGAAAGAATAAACACGACGGGTCTAATAATAAAAAGTTCTAAA
ATGTGTTAATAAAGTCATTACCATTCATTTCGTAGAGGGTAGTGTTGATA
AATATATCTTGTAAAACATTACCACAAACATGACACTTTACAGTGGACTT
CTTTAATGTAGTACGTAGCACGTTATTACAGGGTGTGTATGGCGGCCATT
AGCACTACATGAAGAGCTATTTGTATTGAAAGTTCTGAAACAACAACTTA
TTTACAAATTACTTTTACCTGGGCTTTAATATTCATTATTCATCCAATAA
TTTTATCCCAATTATTATCGATTGTCGAATATTCTTCATCTTCATCTGAC
TCTTCATCAGATCCATCCATCCATTCCTCATCCTCGTCTTGGCCCTGAAC
CACAACTTCCTCCTGATACTCTGGTTGCTCTTCAATCTCTTCAGGCTCCT
CATGACTCTTCTGGTGTTTGTCGAATTCTCTTTTCCTGGCGAACTGAGCA
CCACATTCTGAGCACTGATACGGGATAATGCCTTGGTGAACTCCTTCAAT
GTGTCGCTTAAGATCATTTTTCTGAGAATAACTCTTACCACACTCATGAC
ACTTGAACGGCTCTAACCCTCTATGATTCCTTTGAACGTGTGCTAAAAGA
CGGTGCCGATGTGCAAATGATCTGTCACATTCGTCACATTTATGAGGACG
TAAATCTCTAGGGGCAGTTTTCTTGTACACTGTTTTTGGGACTGGTGGTT
TCTTTGGTGTACCTTCATGCTTCTTGACTTTGACATGTTTATAAAGCTCC
CATTTTCTACCAAACCGTTCATCACACCAATCACATTCATAAGGTTTAGC
ACCTTTGTGAACGACATCAATGTGTCTGGTAAGGTCTCCTTTTGCTGAAT
AAGCTCTACCACATTCATGACATTGAAATGGAATCAGATCTTTATGGACG
ATATCTATATGAGCTTGAAGTCGATTCTTCGCCCCAAAGGTCTTTCCACA
CTCTGTGCATTTAAACTTTCTTTCTTCATCATGAATTTGTTTGTGGCTAT
TAAGACCAGCTCTCCGTGAAAATGACTTACCACAAACATTACATTGAAAT
GGCTTAAGACCAAGATGTACAGCATTCTGATGCATTGTTAGCCTGTAATT
ATTGATGAAGACTTTACCACAAACTTCACACTCTTTTCCACCAATCCCAT
TAACTTGTGAAACCTTGGTCCTTTCTTCGAAGGGCTTAAATAGGAAATCA
TTTTGTTGTGTGTCTCCAAGTTGAACTCGGTTGAGAAGATTACCAATAGC
AAGTTGACAAGTACCCATTTTCTTGCCATCCTTGATTATTTCAAATGATA
ATTTGAATGGTATAATTGACGATTCAACCCCTGAATCAACATCTTTGATA
ATCAAGTTTTCAAGTTGGAAATTCATATTTGATTATTTCTTTATTTTGAT
TTTATTATTATCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043958XLOC_043958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070655-exon-scaffold_57-1575043694:63236..64901TCONS_00070655-exon-scaffold_57-1575043694:63236..64901Clytia hemisphaericaexon
TCONS_00070655-exon-scaffold_57-1510915933:63236..64901TCONS_00070655-exon-scaffold_57-1510915933:63236..64901Clytia hemisphaericaexon
TCONS_00070655-exon-scaffold_57-1491911889:63236..64901TCONS_00070655-exon-scaffold_57-1491911889:63236..64901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:63236..64901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.9047	18.2529	25.3174	21.7522	38.4837	30.2573	24.975	25.9612	19.0971	14.6581	12.9162	11.0371	5.97433	4.94416	7.69074	8.50703	21.0841	13.964	5.14159	4.75052	10.5572	11.047	17.4017	16.896	13.7371	15.0059	5.08516	4.47303	10.906	11.0338
Blast
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BLAST of TCONS_00070655 vs. Swiss-Prot (Human)
Match: OZF (Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.222e-46
Identity = 95/244 (38.93%), Postives = 137/244 (56.15%), Query Frame = -2 
Query:  652 ECEVCGKVFINNYRLTMHQNAVHLGLKPFQCNVCGKSFSRRAGLNSHKQIHDEERKFKCTECGKTFGAKNRLQAHIDIVHKDLIPFQCHECGRAYSAKGDLTRHIDVVHKGAKPYECDWCDERFGRKWELYKHVKVKKHEGXXXXXXXXXXXXXXXXPRDLRPHKCDECDRSFAHRHRLLAHVQRNHRGLEPFKCHECGKSYSQKNDLKRHIEGVHQGIIPYQCSECGAQFARKREFDKHQKSH 1383
            EC  CGK F     L  HQ  +H G KPF+C  CGK+F +++ L  H++ H  E+ F C ECGKTF  K+ L  H + +H    PF+C ECG A+  K  L +H + +H G KPYEC+ C + F ++  L  HV++  H G                    +P++C+ C ++F+    L  HV R+H G +P+ C+ECGK++SQ + L  H+  +H G  PYQCSECG  F++K    +HQK H
Sbjct:   73 ECNECGKSFSQKENLLTHQK-IHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEH-EKIHIGEKPFKCSECGTAFGQKKYLIKHQN-IHTGEKPYECNECGKAFSQRTSLIVHVRI--HSGD-------------------KPYECNVCGKAFSQSSSLTVHV-RSHTGEKPYGCNECGKAFSQFSTLALHLR-IHTGKKPYQCSECGKAFSQKSHHIRHQKIH 290

HSP 2 Score: 135.576 bits (340), Expect = 1.774e-35
Identity = 81/235 (34.47%), Postives = 123/235 (52.34%), Query Frame = -2 
Query:  652 MHQNAVHLGLKPFQCNVCGKSFSRRAGLNSHKQIHDEERKFKCTECGKTFGAKNRLQAHIDIVHKDLIPFQCHECGRAYSAKGDLTRHIDVVHKGAKPYECDWCDERFGRKWELYKHVKVKKHEGXXXXXXXXXXXXXXXXPRD-------LRPHKCDECDRSFAHRHRLLAHVQRNHRGLEPFKCHECGKSYSQKNDLKRHIEGVHQGIIPYQCSECGAQFARKREFDKHQKSH 1335
            + Q  ++ G  PF C VCGK FS ++ L  H+  H  E+ F+C ECGK F  K  +  H +  H     F+C+ECG+++S K +L  H   +H G KP+EC  C + F +K  L +H +    E         KT   K+   +        +P KC EC  +F  +  L+ H Q  H G +P++C+ECGK++SQ+  L  H+  +H G  PY+C+ CG  F++      H +SH
Sbjct:    4 LSQQRIYSGENPFACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKHQN-THTGEKLFECNECGKSFSQKENLLTH-QKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKH-QNIHTGEKPYECNECGKAFSQRTSLIVHVR-IHSGDKPYECNVCGKAFSQSSSLTVHVRSH 234

HSP 3 Score: 103.605 bits (257), Expect = 2.780e-24
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = -2 
Query:  967 ECEVCGKVFINNYRLTMHQNAVHLGLKPFQCNVCGKSFSRRAGLNSHKQIHDEERKFKCTECGKTFGAKNRLQAHIDIVHKDLIPFQCHECGRAYSAKGDLTRHIDVVHKGAKPYECDWCDERFGRKWELYKHVKVKKH 1383
            +C  CG  F     L  HQN +H G KP++CN CGK+FS+R  L  H +IH  ++ ++C  CGK F   + L  H+   H    P+ C+ECG+A+S    L  H+ + H G KPY+C  C + F +K    +H K+  H
Sbjct:  157 KCSECGTAFGQKKYLIKHQN-IHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVR-SHTGEKPYGCNECGKAFSQFSTLALHLRI-HTGKKPYQCSECGKAFSQKSHHIRHQKIHTH 292
The following BLAST results are available for this feature:
BLAST of TCONS_00070655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OZF1.222e-4638.93Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 ... [more]
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