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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070623 ID=TCONS_00070623|Name=TCONS_00070623|organism=Clytia hemisphaerica|type=transcript|length=3227bpRun BLAST on NCBI protein sequence of TCONS_00070623-protein >TCONS_00070623-protein ID=TCONS_00070623-protein|Name=TCONS_00070623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp MNRQLSYTSNQMNADGCFTGSYQLRNGNSLNKDIVNEVKSAFDQFDLDHNRun BLAST on NCBI transcript from alignment at scaffold_57:171828..201039+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070623 ID=TCONS_00070623|Name=TCONS_00070623|organism=Clytia hemisphaerica|type=transcript|length=29212bp|location=Sequence derived from alignment at scaffold_57:171828..201039+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:171828..201039+ >TCONS_00070623 ID=TCONS_00070623|Name=TCONS_00070623|organism=Clytia hemisphaerica|type=CDS|length=25155bp|location=Sequence derived from alignment at scaffold_57:171828..201039+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070623 vs. Swiss-Prot (Human)
Match: PLST (Plastin-3 OS=Homo sapiens GN=PLS3 PE=1 SV=4) HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0 Identity = 339/625 (54.24%), Postives = 444/625 (71.04%), Query Frame = 3
Query: 216 LNKDIVNEVKSAFDQFDLDHNGHITSSELGSIFQALGESVPGYKLREMIAEV----DTDKNGTVEFNEFIEMYCKVSSKGVFGQWTSLVTRREGIKVQXXXXXXXXXXXXXXXXDAEQLAFKDWINSQLREDADCRQYLPIE--AANLFERLKDGIIFCKMINLSAPKTIDERAINKGRLNAFLIQENNLLVINSAQAIGCSVVNVHAEDIIKGKQHLILGLLWQIIRIGLFANITLQANPNIAALLEDGESIXXXXXXXXXXXXXRWVNYHLRKSGSNKRINNFSGDIKDSEAYAILLNQISP--QEFGVDRPERTMQ---IGDSTKRADLILKNADKIGCRKFVTAKDIVGGNSKLNLAFVANLFNHFPTLDPNDIXXXXXXXXXXXXXXXXXXRNWMNSLGVNPFVYHLYNDLSNGLVLFQLYEDIRKGTVNWDKVNKAPFKLATGGNMKKIENCNYAVQLGKIKNSYSLVGIGGEDIYNGTPTLVLALIWQMLRDYTTRMLASLTKQDGSKITDGAIVDWVNNKLNSCNKRTRIANFKDPTISTSLAVIDLVDSIKPGSVDYSLVTEGH-SDEDKELNAQYAISMSRKIGAKTYALPEDLVEVKPKMVLTVFACLMTRGLQ 2054
++KD ++E+K AF + DL+ NG I EL +F+ +PGYK+RE+I ++ D +K+G + F+EF+ ++ +V S + + + R+EGI GGT+E S+EGT H+ S+ E+ AF +WIN L D DCR +P+ +LF+ + DGI+ CKMINLS P TIDERAINK +L F+IQEN L +NSA AIGC VVN+ AED+ GK HL+LGLLWQII+IGLFA+I L N +AALL DGE++E+L+KLSPEELLLRW N+HL SG K INNFS DIKDS+AY LLNQI+P Q+ G R + M D KRA+ +L+ ADK+GCR+FVT D+V GN KLNLAFVANLFN +P L + ++ E+REE+T+RNWMNSLGVNP V HLY DL + LV+ QLYE I K V+W KVNK P+ G NMKK+ENCNYAV+LGK +SLVGIGG+D+ +G TL LAL+WQ++R YT +L L DG K D IV+WVN L+ K T I +FKD TIS+SLAV+DL+D+I+PG ++Y LV G+ +++DK NA+YA+SM+R+IGA+ YALPEDLVEVKPKMV+TVFACLM RG++
Sbjct: 9 ISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDGDRNKDGKISFDEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQK-INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFNKYPALTKPENQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYADLQDALVILQLYERI-KVPVDWSKVNKPPYP-KLGANMKKLENCNYAVELGKHPAKFSLVGIGGQDLNDGNQTLTLALVWQLMRRYTLNVLEDLG--DGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMK 628 The following BLAST results are available for this feature:
BLAST of TCONS_00070623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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