TCONS_00070529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070529
Unique NameTCONS_00070529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070529 ID=TCONS_00070529|Name=TCONS_00070529|organism=Clytia hemisphaerica|type=transcript|length=1943bp
GGCGTTGTGTGTTAAAGAAGAGCCCGGGGAGAGGTAGACGGTCTCTCTCT
TCAGCGCAAATACAAAAGAACGTTGACCGGTTTTGTGAGTTTCGTGACGA
TGGGGATTTCGTGTTTCCGTTGAAATGCCGTATTTACATCAACTGTTTTG
AAGGGAAAGCATCGTTTGCGTCGTGTGCTGACGGGGAGCGTTTTCATCCT
GAACTCAGGAAATGTGTAAAAGCTGCGGATGTTGATTGTGAAACACCTGG
ATTGAAAACACAAGAagTATTTCAAGTCAAGACCGAAATCAAACGTTCAA
AGCTTCGAGAAATAATCCCCATAGTGCACAAATTTTACTCCGTCACTCTC
GATATTAAACCTAAAACACCTGCTCGTGGTGGGTGGAATAGTGTTTTCCA
CGCTACTATCAAGTCAAGTTGGACATACTACGGTGATAGAACGCCCAGTA
TAGTTATGCACAAAGATACTACAAAGTTACAgttttgTGGACCTCTCAAC
TATCCAAATCCAATTCTATGTCAAAGTCCTGCTCCACCAATACCTCTTAA
CAAATTTACCAAGATTAAGATCCAACAAATTCCCAACGGAGATGATTCCA
AATTCATTGTTTACATCAATGGAAAAACTGTTTGGACAGCTACACCAAAC
TATCCAACCATGTTTTCGAACGTGAAAGTTTATGAAGGGGATCCATATTT
CCCTGCTGCTAACATTGAAACCAAGAATTATAAGTTTCAATCAGGGATCA
CTGCAGGTCACGTCCTTGAAACTGTCAAGAAACTGCAAAACATGTGGACA
CTCAAACTCGCCATCATTCCCGTCAAAACACAAAACGGTGACACAAGCAT
TCTCCACGCTACACCTTACTTCGATAGCCGTACAGTGGGAGAACTAAAAA
TCGATTTCCTTGATAAAACAACCAGGCTTCGTATCTGTGTACCGTCGCTC
TCGACATCTTATACACCCTACTGCATCACATTCCCACGCTCCTTACCACT
AAGCAAGTTGGCAAAGATCCAGATTCGCCGTCGACCAGCAGTCTCTGGAA
CTGATTACATTATCCATTTGAACGGGGAACAGAAATACAAGTTTAACGAT
CCAACACCAAATAAAGTTGATGATGTAAATATGTATCTCTCTGATCCTTT
CATGGCGCCCGCTAATGCTGTTCTGGAAGCATACCAATTCAATAATGGCG
TTCAGAAAGGTCACGTCATAGATGAAAAATCCAGTCTCGGCCCAGCCTGG
AAACTCAATCTTAAGATCACCATAACCAACACACAGCATACGGGCTGGAT
CAACATTCTACACGCTGTCAACAATGGTGTCTCAAGTGATttattgtttt
atgttttcattCAACCGAGAACAACACGCCCATACATCTGTACCGCCCTC
AAACAAGGTGGCGCCAACCTATGTACATCCACGTCATCGCTATCCTTGAA
TAGACCAACTTTGATTGAAATAGATCATTTTCAATCTTCTGGGAAATATT
ACTATCAGATGACTGTTGGTGGACAAGCAGTGTATTTGGATGCGAGCAAA
AGGCGACCAAAACCCATTCTGAATGCAAATCCAAGGACATTTGAAAATGT
GGTTGTTTATGCGTCAAGCCCTTACTATAACGAACCTTCTGACAATGTAG
AAATTAGTGGATATAGTTTAGTGCAAAACGTTGATCGgttttaatcggat
taattttcgtgaaccaaaaaaacaaaaaaagaaaagatttattttcgcga
attggCATTAAGAAAAATTCGAATCAGTCGAAATAACGAAACTGGCCCCG
AAAACGCCCAAATGAGCACGAAAATAAGTGCGATTAAAGTAGAACATTTT
AACCAATATTCGAACCAGAGTTGTACTTTCTCTTTATATTTCTTATGTAT
ATGTTTCTTATGTATCTTTTTGCATTATAGTACGATTGTGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_56:556644..561638-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070529 ID=TCONS_00070529|Name=TCONS_00070529|organism=Clytia hemisphaerica|type=transcript|length=4995bp|location=Sequence derived from alignment at scaffold_56:556644..561638- (Clytia hemisphaerica)
GGCGTTGTGTGTTAAAGAAGAGCCCGGGGAGAGGTAGACGGTCTCTCTCT
TCAGCGCAAATACAAAAGAACGTTGACCGGTTTTGTGAGTTTCGTGACGA
TGGGGATTTCGTGTTTCCGTTGAAATGCCGTATTTACATCAACTGTTTTG
AAGGGAAAGCATCGTTTGCGTCGTGTGCTGACGGGGAGCGTTTTCATCCT
GAACTCAGGAAATGTGTAAAAGCTGCGGATGTTGATTGTGAAACACCTGG
ATTGAAAACACAAGAAGGTATTTGAAATTTTTTATAACTTAAGTTGCACT
AGGATACAATAATGACATAAGATTCTAACCCAATAACCTTCTTTTATCAG
AATGTATTTGTGCGCCATTTAAATTACTTTGAATTGGTTGCCCTATAACT
CGTGACAAGATTTCCGACTTTTTTGACTTGCTTCAAAATATAAAAGGGAA
CTCAGATAATACCAATAATATTCCATTTTCCAAACAAGATTAAAGGTTTT
GTTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTAATTCAC
AAGCTTTTTCACATTGGATTGACACGAATGTGGAGCAAGATTTGTCAAAA
AGAGGAAAAGAAAAACATTTTTTTGCTTATATCAGCATAACATAACAATA
GGTAGACACTGTCCTGGTATGAAATATGTCTGATATGAAACGGAAACACT
TACGTAAAAATAAAACCTTTAAGCTGCTCTACTACTTTTCAATATTTTCC
TTTTTGTAGTATTTCAAGTCAAGACCGAAATCAAACGTTCAAAGCTTCGA
GAAATAATCCCCATAGTGCACAAATTTTACTCCGTCACTCTCGATATTAA
ACCTAAAACACCTGCTCGTGGTGGGTGGAATAGTGTTTTCCACGCTACTA
TCAAGTCAAGTTGGACATACTACGGTGATAGAACGCCCAGTATAGTTATG
CACAAAGATACTACAAAGTTACAGGTAATTTGAATTTTTTACTAGTGATA
TTTTGTATGCCGTTTTTTAGGAACCTGCGATGAAATATAGACGTTATTGC
CGCTGCAAATACGAGAGAGTATTTTGAACTAGAATTTTCACTTAAGTCCG
CGTAATGGTTTAACATAGTCTTTTTGAAAGCTTTTTTTTTAAGATCATTT
TTATAATTTTACACTCCTGATTATCTTTCAACACCACGAAACAACTATCT
TTATTGGAATTATAGTAAAAGTTGCCTTTTTCGAGACAAATTTATAATCG
CGTAACCTAGTATCAAGTGTAAAAAGTTATTCCGTCTAGGACGGGTTTCC
GTCTCAGAGAAAAATAAAAGGTCACTAATAAATTCTGCGTATTTCACCAA
AATTTCAAGAAAATGTGCTAATTTGCTGTGTAAGATTTATTCTATCTCAG
AAAAAGACAAATAACCTTGCTTTGACCATGGAGTATTGCTTTTTACCATT
GTGTTTTTTGATTTTCAGTTTTGTGGACCTCTCAACTATCCAAATCCAAT
TCTATGTCAAAGTCCTGCTCCACCAATACCTCTTAACAAATTTACCAAGA
TTAAGATCCAACAAATTCCCAACGGAGATGATTCCAAATTCATTGTTTAC
ATCAATGGAAAAACTGTTTGGACAGCTACACCAAACTATCCAACCATGTT
TTCGAACGTGAAAGTTTATGAAGGGGATCCATATTTCCCTGCTGCTAACA
TTGAAACCAAGAACTATAAATTTCAATCAGGTAGCTAACTCTCTAGTTTT
TGGGTGTGCTTCCAGCACGTGTCGAAAATTCTATTTTTTTTTAATGGTGA
ATAATGCCTACGAAAGGTTGAAATTTCCTTATTTCCCTGCTGCTAACATT
GAAACCAAGAATTATAAGTTTCAATCAGGTAACTCTCTAGTTTTTGGGTG
TGCTTCCAGCACGTGTCGAAAATTCTAAATTTTTTTAATGGTGAATAATG
CCTACGAAAGGTTGAAATTTCCTTATTTCCCTGCTGGTAACATTGAAACC
AAGAATTATAAGTTTCAATCAGGTAACTCTCTAGTTTTTGGGTGTGCTTC
CAGCACGTGTCGAAAATTCGAACTTCTTTTAGTGGTGAATAATGCCTACG
AAAGGTTGAAATATCCTTATTTCCCTGCTGCTAACATTGAAACCAAGAAT
TATAAGTTTCAATCAGGTAACTCTCTGTTTTTTGGGTGTGCTTCCAGCAC
GTGTCGAAAATTCGAATTTTTTTTAATGGTGAATAATGCCTACGAAAGGT
TGAAATATCCTTATTTCCCTGCTGCTAACACATTGAAACCAAGAATTATA
AGTTTCAATCAGGTAACTCTCTGTTTTTTGGTGTGTCTCCAGCACGTGTA
AATTTCAGTCAGGTAATTCTAACTTCTGAGAAACTGAACTTCAACTTTTG
TTCAAACAAGTCAAATAACTACAAAAAAAGGATTTCTATAGGAAAGTTTT
TTATTTCATTCCAAAAGACTTCATTCAGATGTTATAATAATATTAAGCCG
CCGTTTCAAACCAATAATTTTTTGTCCGCTTAGTTTTAGTTTAATAGAGA
TCTAAAAAGAGTGTTCTCTAGTATACGGTAAAAAAAATAATATTGAACAC
TATTCTTTAAACTTCTACAATTCTTCATCTTAGGGATCACTGCAGGTCAC
GTCCTTGAAACTGTCAAGAAACTGCAAAACATGTGGACACTCAAACTCGC
CATCATTCCCGTCAAAACACAAAACGGTGACACAAGCATTCTCCACGCTA
CACCTTACTTCGATAGCCGTACAGTGGGAGAACTAAAAATCGATTTCCTT
GATAAAACAACCAGGCTTCGTATCTGTGTACCGTCGCTCTCGACATCTTA
TACACCCTACTGCATCACATTCCCACGCTCCTTACCACTAAGCAAGTTGG
CAAAGATCCAGATTCGCCGTCGACCAGCAGTCTCTGGAACTGATTACATT
ATCCATTTGAACGGGGAACAGAAATACAAGTTTAACGATCCAACACCAAA
TAAAGTTGATGATGTAAATATGTATCTCTCTGATCCTTTCATGGCGCCCG
CTAATGCTGTTCTGGAAGCATACCAATTCAATAATGGTAAGTATAAGAGG
ATGACCCTTCAAGAATTGTGGAGACTCTAAGTTTAACTTGAATCTCTATA
ACTGGAATGTTCTTAACTCGAACAGGTTTTATTGTCCATTAAGTTAACAA
TGCCTTCAATAAACCTTACTCCTTACTCGAAATTTCCTTATATAACTTGA
TATACTTGCTCCTTGCGAGCTCCGTAAGTGAATACCTGAGTTGTTTTTTC
GTTTTTTTTTGGAAAAAAATATTTTTTGGGAACGAGATTTTTACTGCTAT
GAGATATTGAGCAATCCTTCACTTATAAATCCGTTTAAATCTTTACATTG
TTGTCAACTTCTCTCTCCAGGCGTTCAGAAAGGTCACGTCATAGATGAAA
AATCCAGTCTCGGCCCAGCCTGGAAACTCAATCTTAAGATCACCATAACC
AACACACAGCATACGGGCTGGATCAACATTCTACACGCTGTCAACAATGG
TGTCTCAAGTGATTTATTGTTTTATGTTTTCATTCAACCGAGAACAACAC
GCCCATACATCTGTACCGCCCTCAAACAAGGTGGCGCCAACCTATGTACA
TCCACGTCATCGCTATCCTTGAATAGACCAACTTTGATTGAAATAGATCA
TTTTCAATCTTCTGGGAAATATTACTATCAGATGACTGTTGGTGGACAAG
CAGTGTATTTGGATGCGAGCAAAAGGCGACCAAAACCCATTCTGAATGCA
AATCCAAGGACATTTGAAAATGTGGTTGTTTATGCGTCAAGCCCTTACTA
TAACAAACCTTCTGACAATGTAGAAATTAGTGGATATAGTTTAGTGCAAA
ACGTTGATCGGTTTTAATCGGATTAATTTTCGTGAACCAAAAAAACAAAA
AAAGAAAAGATTTATTTTCGCGAATTGGCATTAAGAAAAATTCGAATCAG
TCGAAATAACGAAACTGGCCCCGAAAACGCCCAAATGAGCACGAAAATAA
NTTCCTTACTCGAAATTTCCTTAACTTGATATACTTGCTCCTTGCGAGCT
CCGTAAGTGAATACCTGAGTTGTTTTTTCGTTTTTTTTTGGAAAAAAATA
TTCTTTGGGAACGAGATTTTTACTGCTATGAGATATTGAGCAATCCTTCA
CTTATAAATCCGTTTAAATCTTTACATTGTTGTCAACTTCTCTCTCCAGG
CGTTCAGAAAGGTCACGTCATAGATGAAAAATCCAGTCTCGGCCCAGCCT
GGAAACTCAATCTTAAGATCACCATAACCAACACACAGCATACGGGCTGG
ATCAACATTCTACACGCTGTCAACAATGGTGTCTCAAGTGATTTATTGTT
TTATGTTTTCATTCAACCGAGAACAACACGCCCATACATCTGTACCGCCC
TCAAACAAGGTGGCGCCAACCTATGTACATCCACGTCATCGCTATCCTTG
AATAGACCAACTTTGATTGAAATAGATCATTTTCAATCTTCTGGGAAATA
TTACTATCAGATGACTGTTGGTGGACAAGCAGTGTATTTGGATGCGAGCA
AAAGGCGACCAAAACCCATTCTGAATGCAAATCCAAGGACATTTGAAAAT
GTGGTTGTTTATGCGTCAAGCCCTTACTATAACGAACCTTCTGACAATGT
AGAAATTAGTGGATATAGTTTAGTGCAAAACGTTGATCGGTTTTAATCGG
ATTAATTTTCGTGAACCAAAAAAACAAAAAAAGAAAAGATTTATTTTCGC
GAATTGGCATTAAGAAAAATTCGAATCAGTCGAAATAACGAAACTGGCCC
CGAAAACGCCCAAATGAGCACGAAAATAAGTGCGATTAAAGTAGAACATT
TTAACCAATATTCGAACCAGAGTTGTACTTTCTCTTTATATTTCTTATGT
ATATGTTTCTTATGTATCTTTTTGCATTATAGTACGATTGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043902XLOC_043902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070529-exon-scaffold_56-1575043694:561372..561638TCONS_00070529-exon-scaffold_56-1575043694:561372..561638Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1575043694:560665..560879TCONS_00070529-exon-scaffold_56-1575043694:560665..560879Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1575043694:559940..560170TCONS_00070529-exon-scaffold_56-1575043694:559940..560170Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1575043694:559473..559503TCONS_00070529-exon-scaffold_56-1575043694:559473..559503Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1575043694:558553..559005TCONS_00070529-exon-scaffold_56-1575043694:558553..559005Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1575043694:556644..557389TCONS_00070529-exon-scaffold_56-1575043694:556644..557389Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1510915933:561372..561638TCONS_00070529-exon-scaffold_56-1510915933:561372..561638Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1510915933:560665..560879TCONS_00070529-exon-scaffold_56-1510915933:560665..560879Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1510915933:559940..560170TCONS_00070529-exon-scaffold_56-1510915933:559940..560170Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1510915933:559473..559503TCONS_00070529-exon-scaffold_56-1510915933:559473..559503Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1510915933:558553..559005TCONS_00070529-exon-scaffold_56-1510915933:558553..559005Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1510915933:556644..557389TCONS_00070529-exon-scaffold_56-1510915933:556644..557389Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1491911889:561372..561638TCONS_00070529-exon-scaffold_56-1491911889:561372..561638Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1491911889:560665..560879TCONS_00070529-exon-scaffold_56-1491911889:560665..560879Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1491911889:559940..560170TCONS_00070529-exon-scaffold_56-1491911889:559940..560170Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1491911889:559473..559503TCONS_00070529-exon-scaffold_56-1491911889:559473..559503Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1491911889:558553..559005TCONS_00070529-exon-scaffold_56-1491911889:558553..559005Clytia hemisphaericaexon
TCONS_00070529-exon-scaffold_56-1491911889:556644..557389TCONS_00070529-exon-scaffold_56-1491911889:556644..557389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:556644..561638 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0919374	0.0573034	0	0.090657	0	0.00892131	0.115982	0.128849	0.0344826	0	0.0207288	0	8.79555	2.93898	0.175338	0	0	1.61318	0	0.254386	0.107082	0.0522308	0.108719	0.14542	0	0.220561	0	0	0.145886	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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