TCONS_00070490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070490
Unique NameTCONS_00070490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070490 ID=TCONS_00070490|Name=TCONS_00070490|organism=Clytia hemisphaerica|type=transcript|length=2457bp
TTAGAATCTCGCTTTTTCTTACTTGAGAAAAGGTCACTAGCAACTTGAGT
TTTTACTTTATTGGTAGTAGAGGTATAAAACAGAGTGGTTGCAAGGAATA
AGGTAGGCCACATTCTTCAATTCATTACGAGATACAAAAACACTTTAGTA
GGGGGTCAAACATCTTATGAAAAGATCATCAAAGGTGTTCAAAAATCAGC
AAATGACCAGGCTGGTAAATTTCCCTAtattacaaaataaaattcGTTCT
CTCTAAAAATCCCACTCACAAAGCACTTTTGTGTTACCAAAAACATAATC
GAATGATTGtctgtaaagtttttatttctcattttccaTCGAATTTCGAA
TTTAACCTCTCTGTCGTTCAATTATATCTTTCTTCTGACGTGCAGCACAT
CCACTTGGGCAAATATTACCCTGGCAAGGCTGTGGACACATTGGAGGATA
AATGTTCGTTGTTTGAGGGCAGCCACCTGGACAAGATGGCGGCATGCAAG
GCTGTGGACACATGTTAACGGTCGATTGTACTACGGTGCACCCCTGTGGA
CAGATGTGAGGCGGGCAAGGCGTTGGACAGCTGGATGGCGTCATTGCAGT
TGTGGTAGGACAGTATGCTGGACAACTTGGTGGTTGACATGGCTGTGGAC
ATGATGGGATAAGACAGTTTGCAGGGCAAAATGGCGGGATACAAGGAGAC
GGACAGGCCGGTGCTTGAGGTGCTGGCATCTGCTGTTGAAGTTTACTTGG
AGAAAAATAAAACCTTGGAGATTCTTGACAGCCAGATGGACAGCCTGGTG
GTTGACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTTTGCGGG
CAACCCATAGGGCACCCTGGAGCTTGGCAGGGTTGTGGGCACATCTGTGG
AGCAGCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTGCACATC
CTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATCGATGGAGCT
GAAGCCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGG
TTGTGGGCACATTTGAGGTGCAGGCATCATGGGAGGAGGCATCATCATAG
CCGCGCCCTGTGCACATCCCGTGGGGCATGAGGGAGGCATGCATGGTCTT
GGACACATTGATGGTGCCGAAGCCATGGTTTGTGGGCATCCCATTGGACA
AGAAGGTGCCTGACAAGGTTGAGGGCACATCTGTGGAGCAGCCATCATTG
GAGCGGCTTGCATACAGCCAGTTGGACAAGATGGAGGCATACAGGGCTGT
GGGCACATTGAAGGCATGGAAGCCATGGTCATGGGGCAACCCATCGGGCA
ACCTGGAGCTTGACAAGGTTGTGGACACGTCTGCATCATTTTTTGAGGTG
AAAAGTAAAGTCTTGGTGTTTGTTGACACCCGATAGGACAAGAAGGTGGT
TGGCAGGGTTGTGGACACATAGATGGAGCAGCCATTGAAGTTGCTGGACA
TCCCATTGGACAAGCTGGTGGTTGACAGGGTTGTGGACACATTGGTGGTG
GAGCCATCATTTGAGTTTGCATGCACCCAGAAGGACAAGCAGGTGGTTGA
CATGGTTGTGGGCACATTGAAGGAGCTGAAGCCATTGTCTGTGGACATCC
CATAGGGCAAGAGGCTCCCTGGCATGGTTGAGGACATTGTTTTTGACATT
GAGCTGGGCATGAGCTTGGAGGACATGGTGTTGGGCAAGCCATAATGTTC
ACTGTCTGTTGTGTGGCGATGCATCCTGGTGGACATGGGTGAGGGCAAGG
GTTGGGGCAGCCACCAAGAGGAGGGGCAGATGCAGCTGAGGGTGGAGGAT
TAGCTGATGGTCCGTATACTGGAATGTCTAAAGTGATGGGGCATCCGGTT
GGACAGTTGCTGGATGGACAGGGTCTTGGACACATGGCTGGTAAAGCAGA
CATGGTGAAGGGGCAACCACTTGGGCAGGCTGGAGGTTGGCAGGGCTGTG
GGCACATTTGTTGTGGTCGGGCAGCTCCCAAGCAAGAGGATGGGCATGAT
GGTGGTAGACATGGGTTAGAGCAGATTGGTGTTGGTGGGATCACAGTGAT
ACCAGTTGTTTGTGGGCAACCCATGGGACAACCAGAAGGTGGACACATTG
ATGGACAGAAAGGAGGTTGCATAGGCATTGGCATGGGAGCCATCATCTGA
CTTTGTTGACATGGATATGGACATGGAGAGGGGCATTGGAAGGGACATGG
TGGTTGACCCATAACTGGATCCCAGCTTTGTGCCAACATGTTGTAAATGA
AAGGATCAACACCTTTTGGAGGTTGCTGCTGTTGTCCTGATTGTTGTGAA
GCAGGACGTTGGTAGGAGTTCGATGATGAGGCTGAGGTAAGTGGGGAGCT
TCTGGACATGGAGCCTAAGCGATTCCGTTTTTCAGCGGTAGTGTTGGCAT
TGTCACC
Run BLAST on NCBI

transcript from alignment at scaffold_56:859090..863222+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070490 ID=TCONS_00070490|Name=TCONS_00070490|organism=Clytia hemisphaerica|type=transcript|length=4133bp|location=Sequence derived from alignment at scaffold_56:859090..863222+ (Clytia hemisphaerica)
TTAGAATCTCGCTTTTTCTTACTTGAGAAAAGGTCACTAGCAACTTGAGT
TTTTACTTTATTGGTAGTAGAGGTATAAAACAGAGTGGTTGCAAGGAATA
AGGTAGGCCACATTCTTCAATTCATTACGAGATACAAAAACACTTTAGTA
GGGGGTCAAACATCTTATGAAAAGATCATCAAAGGTGTTCAAAAATCAGC
AAATGACCAGGCTGGTAAATTTCCCTAtattacaaaataaaattcGTTCT
CTCTAAAAATCCCACTCACAAAGCACTTTTGTGTTACCAAAAACATAATC
GAATGATTGtctgtaaagtttttatttctcattttccaTCGAATTTCGAA
TTTAACCTCTCTGTCGTTCAATTATATCTTTCTTCTGACGTGCAGCACAT
CCACTTGGGCAAATATTACCCTGGCAAGGCTGTGGACACATTGGAGGATA
AATGTTCGTTGTTTGAGGGCAGCCACCTGGACAAGATGGCGGCATGCAAG
GCTGTGGACACATGTTAACGGTCGATTGTACTACGGTGCACCCCTGTGGA
CAGATGTGAGGCGGGCAAGGCGTTGGACAGCTGGATGGCGTCATTGCAGT
TGTGGTAGGACAGTATGCTGGACAACTTGGTGGTTGACATGGCTGTGGAC
ATGATGGGATAAGACAGTTTGCAGGGCAAAATGGCGGGATACAAGGAGAC
GGACAGGCCGGTGCTTGAGGTGCTGGCATCTGCTGTTGAAGTTTACTTGG
AGAAAAATAAAACCTTGGAGATTCTTGACAGCCAGATGGACAGCCTGGTG
GTTGACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTTTGCGGG
CAACCCATAGGGCACCCTGGAGCTTGGCAGGGTTGTGGGCACATCTGTGG
AGCAGCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTGCACATC
CTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATCGATGGAGCT
GAAGCCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGG
TTGTGGACACATTGTTGGAGCGGAAGCCATGGTTTGCGGGCAACCCATAG
GGCACCCTGGAGCTTGGCAGGGTTGCGGGCACATCTGTGGAGCAGCCATC
ATGGGAGGTTGCATCATCATAGCGGCACCTTGTGCACATCCTGAGGGGCA
CGATGGTGGCGTGCATGGTCTTGGACACATCGATGGAGCTGAAGCCATGG
TCTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGGTTGTGGGCAC
ATTTGAGGTGCAGGCATCATGGGAGGAGGCATCATCATAGCCGCGCCCTG
TGCACATCCCGTGGGGCATGAGGGAGGCATGCATGGTCTTGGACACATTG
ATGGTGCCGAAGCCATGGTTTGTGGGCATCCCATTGGACAAGAAGGTGCC
TGACAAGGTTGAGGGCACATCTGTGGAGCAGCCATCATTGGAGCGGCTTG
CATACAGCCAGTTGGACAAGATGGAGGCATACAGGGCTGTGGACACATCG
AAGGCATAGAAGCCATGGTCATGGGGCAACCCATTGGGCAACCTGGAGCT
TGACAAGGTTGTGGACACATCATCGGTTGAGGTGGTGACATTTGCTGAAG
GAGCTTCTCTGGCGAGAAATAAAATCGTGGCGACTCTTGACATCCAGAAG
GACAGCCTGGTTGTTGACAGGGCTGTGGACACATTGTTGGAGCTGAAGCC
ATGGTTTGCGGGCATCCCATAGGGCACCCTGGAGCTTGGCAAGGTTGTGG
GCACATCTGTGGAGCAGCCATCATGGGAGGTGGCATCATCATAGCGGCAC
CCTGGGCACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG
TTCTGTGGAGCAGCCATCATGGGAGGTGGCATCATCATAGCGGCACCCTG
GGCACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATTG
TTGGAGCTGAAGCCATGGTCTGCGGGCATCCCATAGGGCACCCTGGAGCT
TGGCAGGGTTGTGGGCACATCTGTGGAGCAGCCATCATGGGAGGTGGCAT
CATCATAGCGGCACCCTGGGCACATCCTGAGGGGCACGATGGTGGCATGC
ATGGTCTTGGACACATTGATGGTGCGGAAGCCATGGTTTGTGGGCAACCC
ATTGGACAGGAGGGTGCTTGACAAGGTTGTGGGCACATCTGTGGAGCAGC
CATCATGGGAGGAGGCATCATCATAGCGGCACCTTGTGCACATCCTGAGG
GGCACGATGGTGGCATGCATGGTCTTGGACACATTGATGGTGCGGAAGCC
ATGGTTTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGGTTGAGG
ACACATTTGAGGAGCACCCATCATCGGTGCAGCTTGCAAACAGCCATTTG
GACAAGATGGAGGCATACAGGGCTGTGGGCACATTGAAGGCATGGAAGCC
ATGGTCATGGGGCAACCCATCGGGCAACCTGGAGCTTGACAAGGTTGTGG
ACACGTCTGCATCATTTTTTGAGGTGAAAAGTAAAGTCTTGGTGTTTGTT
GACACCCGATAGGACAAGAAGGTGGTTGGCAGGGTTGTGGACACATAGAT
GGAGCAGCCATTGAAGTTGCTGGACATCCCATTGGACAAGCTGGTGGTTG
ACAGGGTTGTGGACACATTGGTGGTGGAGCCATCATTTGAGTTTGCATGC
ACCCAGAAGGACAAGCAGGTGGTTGACATGGTTGTGGGCACATTGAAGGA
GCTGAAGCCATTGTCTGTGGACATCCCATAGGGCAAGAGGCTCCCTGGCA
TGGTTGAGGACATTGTTTTTGACATTGAGCTGGGCATGAGCTTGGAGGAC
ATGGTGTTGGGCAAGCCATAATGTTCACTGTCTGTTGTGTGGCGATGCAT
CCTGGTGGACATGGGTGAGGGCAAGGGTTGGGGCAGCCACCAAGAGGAGG
GGCAGATGCAGCTGAGGGTGGAGGATTAGCTGATGGTCCGTATACTGGAA
TGTCTAAAGTGATGGGGCATCCGGTTGGACAGTTGCTGGATGGACAGGGT
CTTGGACACATGGCTGGTAAAGCAGACATGGTGAAGGGGCAACCACTTGG
GCAGGCTGGAGGTTGGCAGGGCTGTGGGCACATTTGTTGTGGTCGGGCAG
CTCCCAAGCAAGAGGATGGGCATGATGGTGGTAGACATGGGTTAGAGCAG
ATTGGTGTTGGTGGGATCACAGTGATACCAGTTGTTTGTGGGCAACCCAT
GGGACAACCAGAAGGTGGACACATTGATGGACAGAAAGGAGGTTGCATAG
GCATTGGCATGGGAGCCATCATCTGACTTTGTTGACATGGATATGGACAT
GGAGAGGGGCATTGGAAGGGACATGGTGGTTGACCCATAACTGGATCCCA
GCTTTGTGCCAACATGTTGTAAATGAAAGGATCAACACCTTTTGGAGGTT
GCTGCTGTTGTCCTGATTGTTGTGAAGCAGGACGTTGGTAGGAGTTCGAT
GATGAGGCTGAGGTAAGTGGGGAGCTTCTGGACATGGAGCCTAAGCGATT
CCGTTTTTCAGCGGTAGTGTTGGCATTGTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043884XLOC_043884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070490-exon-scaffold_56-1491911889:859090..860077TCONS_00070490-exon-scaffold_56-1491911889:859090..860077Clytia hemisphaericaexon
TCONS_00070490-exon-scaffold_56-1510915933:859090..860077TCONS_00070490-exon-scaffold_56-1510915933:859090..860077Clytia hemisphaericaexon
TCONS_00070490-exon-scaffold_56-1575043694:859090..860077TCONS_00070490-exon-scaffold_56-1575043694:859090..860077Clytia hemisphaericaexon
TCONS_00070490-exon-scaffold_56-1491911889:860318..860615TCONS_00070490-exon-scaffold_56-1491911889:860318..860615Clytia hemisphaericaexon
TCONS_00070490-exon-scaffold_56-1510915933:860318..860615TCONS_00070490-exon-scaffold_56-1510915933:860318..860615Clytia hemisphaericaexon
TCONS_00070490-exon-scaffold_56-1575043694:860318..860615TCONS_00070490-exon-scaffold_56-1575043694:860318..860615Clytia hemisphaericaexon
TCONS_00070490-exon-scaffold_56-1491911889:862052..863222TCONS_00070490-exon-scaffold_56-1491911889:862052..863222Clytia hemisphaericaexon
TCONS_00070490-exon-scaffold_56-1510915933:862052..863222TCONS_00070490-exon-scaffold_56-1510915933:862052..863222Clytia hemisphaericaexon
TCONS_00070490-exon-scaffold_56-1575043694:862052..863222TCONS_00070490-exon-scaffold_56-1575043694:862052..863222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:859090..863222 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.126193	0.214094	0.0760871	0.687034	1.13284	6.6657	8.13763	0.592308	1.01623	9.22818	1.16468	3.74027	5.40545	3.65833	10.7102	5.97195	7.35775	0.115485	0.0103965	7.00327	6.44475	4.17781	3.53276	5.23763	6.38809	1.31319	0.521456	0.105237	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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